Wall clock time and date at job start Tue Mar 31 2020 13:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46866 * 2 1 4 4 C 1.46498 * 119.99707 * 274.68503 * 3 2 1 5 5 C 1.50707 * 109.47203 * 263.52638 * 4 3 2 6 6 H 1.07998 * 119.99366 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99939 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99669 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00108 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47030 * 89.99817 * 9 7 5 11 11 H 1.48503 * 109.46842 * 209.99821 * 9 7 5 12 12 H 1.48491 * 109.47073 * 329.99313 * 9 7 5 13 13 C 1.34776 * 120.00367 * 94.68274 * 3 2 1 14 14 O 1.21359 * 119.99414 * 354.52232 * 13 3 2 15 15 C 1.49351 * 120.00347 * 174.79558 * 13 3 2 16 16 O 1.21373 * 119.99851 * 1.38125 * 15 13 3 17 17 N 1.34775 * 119.99881 * 181.37946 * 15 13 3 18 18 C 1.39724 * 119.99437 * 185.05475 * 17 15 13 19 19 C 1.38959 * 120.06369 * 323.45893 * 18 17 15 20 20 C 1.38148 * 119.96665 * 179.70415 * 19 18 17 21 21 C 1.38057 * 120.01380 * 0.59964 * 20 19 18 22 22 C 1.38668 * 120.16366 * 359.67627 * 21 20 19 23 23 C 1.37836 * 120.11680 * 0.02562 * 22 21 20 24 24 C 1.51096 * 107.26341 * 180.02562 * 22 21 20 25 25 O 1.43931 * 105.95675 * 17.70611 * 24 22 21 26 26 C 1.43931 * 104.95880 * 331.51639 * 25 24 22 27 27 H 1.09004 * 109.47241 * 300.00054 * 1 2 3 28 28 H 1.08994 * 109.47473 * 60.00133 * 1 2 3 29 29 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47070 * 240.00557 * 2 1 3 31 31 H 1.09001 * 109.47147 * 119.99699 * 2 1 3 32 32 H 1.08999 * 109.47647 * 23.52872 * 4 3 2 33 33 H 1.09001 * 109.47116 * 143.52708 * 4 3 2 34 34 H 0.96999 * 120.00157 * 180.02562 * 8 7 5 35 35 H 0.96993 * 120.00350 * 5.05167 * 17 15 13 36 36 H 1.08005 * 120.01462 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.99170 * 180.28390 * 20 19 18 38 38 H 1.08001 * 120.07247 * 180.02562 * 23 22 21 39 39 H 1.09001 * 110.15595 * 136.83370 * 24 22 21 40 40 H 1.09007 * 110.15472 * 258.58179 * 24 22 21 41 41 H 1.09004 * 110.15689 * 147.60324 * 26 25 24 42 42 H 1.08998 * 110.16161 * 269.29123 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1647 2.1064 -1.2645 5 6 3.5940 2.0147 -1.7336 6 1 4.3204 1.4703 -1.1485 7 6 3.9738 2.6248 -2.9102 8 7 5.2211 2.5452 -3.3193 9 14 2.7171 3.5657 -3.9225 10 1 2.6913 4.9845 -3.4851 11 1 3.0872 3.4972 -5.3591 12 1 1.3738 2.9632 -3.7283 13 6 2.3328 1.9849 1.1633 14 8 2.1183 1.4215 2.2165 15 6 2.9394 3.3497 1.1563 16 8 3.1262 3.9254 0.1043 17 7 3.2795 3.9418 2.3183 18 6 3.7483 5.2581 2.3205 19 6 4.5584 5.7102 1.2860 20 6 5.0158 7.0138 1.2870 21 6 4.6784 7.8632 2.3217 22 6 3.8748 7.4135 3.3585 23 6 3.4101 6.1159 3.3604 24 6 3.6925 8.5670 4.3172 25 8 4.0530 9.7519 3.5838 26 6 5.0155 9.3077 2.6102 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5073 1.6660 -2.0142 33 1 1.8973 3.1527 -1.1164 34 1 5.4885 2.9747 -4.1469 35 1 3.1988 3.4544 3.1529 36 1 4.8268 5.0441 0.4792 37 1 5.6417 7.3669 0.4808 38 1 2.7839 5.7665 4.1681 39 1 2.6530 8.6266 4.6397 40 1 4.3475 8.4455 5.1800 41 1 4.9311 9.9020 1.7003 42 1 6.0240 9.3851 3.0166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124073068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:27 Heat of formation + Delta-G solvation = -76.366830 kcal Electronic energy + Delta-G solvation = -26757.374627 eV Core-core repulsion = 22895.884388 eV Total energy + Delta-G solvation = -3861.490240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25477 -41.44367 -39.94497 -38.33850 -37.36582 -35.55034 -34.67001 -32.57916 -32.22787 -31.43744 -29.64993 -28.78321 -26.73259 -25.24670 -24.63913 -23.77637 -22.80679 -21.96438 -20.76581 -19.15567 -18.98295 -18.38460 -17.67903 -17.45073 -17.28897 -17.01409 -16.71895 -16.41353 -16.01309 -15.63621 -15.34534 -15.08286 -14.75110 -14.71930 -14.55945 -14.38719 -13.99095 -13.87873 -13.61475 -13.49740 -13.26270 -13.21718 -12.84628 -12.65223 -12.55743 -12.25287 -12.23153 -12.09517 -11.88963 -11.67585 -11.40701 -10.85383 -10.77735 -10.32443 -9.86961 -9.67572 -9.12530 -8.26658 -6.27900 -0.07638 0.24133 0.53464 1.30076 1.37025 1.40238 1.45362 2.13915 2.35966 2.46735 2.60650 2.96129 3.11113 3.23144 3.33504 3.62376 3.88634 4.12064 4.21376 4.28076 4.31686 4.42353 4.46205 4.47088 4.60281 4.62556 4.66486 4.76464 4.84752 4.88533 4.90188 4.99382 5.10159 5.18733 5.26491 5.29087 5.36687 5.44908 5.50133 5.70565 5.87173 6.01987 6.08553 6.35628 6.68338 6.71975 6.98909 7.33704 8.90279 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.004203 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.037667 B = 6660.171394 C = 8198.940089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.562 5.562 4 C 0.211 3.789 5 C -0.507 4.507 6 H 0.027 0.973 7 C 0.025 3.975 8 N -0.946 5.946 9 Si 0.935 3.065 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.238 1.238 13 C 0.508 3.492 14 O -0.553 6.553 15 C 0.490 3.510 16 O -0.476 6.476 17 N -0.643 5.643 18 C 0.139 3.861 19 C -0.136 4.136 20 C -0.080 4.080 21 C -0.155 4.155 22 C -0.121 4.121 23 C -0.107 4.107 24 C 0.096 3.904 25 O -0.378 6.378 26 C 0.096 3.904 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.265 0.735 35 H 0.429 0.571 36 H 0.113 0.887 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 8.028 14.166 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 N -0.292 5.292 4 C 0.089 3.911 5 C -0.546 4.546 6 H 0.045 0.955 7 C -0.173 4.173 8 N -0.587 5.587 9 Si 0.759 3.241 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.161 1.161 13 C 0.290 3.710 14 O -0.434 6.434 15 C 0.272 3.728 16 O -0.347 6.347 17 N -0.292 5.292 18 C 0.045 3.955 19 C -0.157 4.157 20 C -0.099 4.099 21 C -0.156 4.156 22 C -0.122 4.122 23 C -0.127 4.127 24 C 0.020 3.980 25 O -0.297 6.297 26 C 0.020 3.980 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.268 0.732 36 H 0.131 0.869 37 H 0.155 0.845 38 H 0.178 0.822 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.124 8.321 13.778 17.222 hybrid contribution 0.354 -0.386 -0.766 0.928 sum -5.770 7.934 13.012 16.296 Atomic orbital electron populations 1.22045 0.93514 1.03756 1.01896 1.21750 0.96060 0.80499 1.03640 1.48010 1.59730 1.14799 1.06648 1.20008 0.96149 0.93652 0.81289 1.21197 0.94184 1.32699 1.06518 0.95509 1.25537 0.96815 0.96399 0.98552 1.70033 1.18687 1.46238 1.23756 0.85906 0.80926 0.79576 0.77678 1.20420 1.20850 1.16135 1.19809 0.79981 0.86633 0.84540 1.90648 1.55630 1.66540 1.30556 1.20462 0.80247 0.87762 0.84315 1.90904 1.49172 1.64191 1.30419 1.42975 1.63581 1.12379 1.10241 1.17754 0.96052 0.84406 0.97250 1.21289 0.97665 0.97275 0.99445 1.20369 0.99677 0.91857 0.97965 1.21292 1.00330 0.98044 0.95924 1.21098 0.98360 0.95312 0.97399 1.20235 1.01653 0.91355 0.99485 1.21908 1.03543 0.79841 0.92696 1.89051 1.61388 1.29730 1.49560 1.21833 0.93486 0.89193 0.93527 0.93075 0.92429 0.88713 0.89633 0.89969 0.93532 0.92896 0.92635 0.73181 0.86914 0.84483 0.82236 0.86692 0.88151 0.87583 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 10.24 71.98 0.74 -3.21 16 2 C 0.10 3.31 6.11 86.38 0.53 3.84 16 3 N -0.56 -22.71 2.47 -827.84 -2.05 -24.76 16 4 C 0.21 9.64 3.85 85.64 0.33 9.97 16 5 C -0.51 -28.32 8.38 25.60 0.21 -28.11 16 6 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 7 C 0.02 1.42 5.47 84.65 0.46 1.89 16 8 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 9 Si 0.94 43.80 27.47 68.60 1.88 45.68 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 13 C 0.51 20.35 7.67 87.24 0.67 21.02 16 14 O -0.55 -21.45 16.05 -3.27 -0.05 -21.50 16 15 C 0.49 19.66 7.56 87.24 0.66 20.32 16 16 O -0.48 -22.37 9.65 -3.32 -0.03 -22.40 16 17 N -0.64 -20.49 5.31 -304.78 -1.62 -22.11 16 18 C 0.14 4.29 6.27 38.24 0.24 4.53 16 19 C -0.14 -4.79 8.69 22.42 0.19 -4.60 16 20 C -0.08 -2.33 10.03 22.21 0.22 -2.10 16 21 C -0.15 -3.77 6.32 -19.67 -0.12 -3.89 16 22 C -0.12 -2.68 6.32 -19.73 -0.12 -2.81 16 23 C -0.11 -2.50 9.97 22.35 0.22 -2.28 16 24 C 0.10 1.59 7.63 71.36 0.54 2.13 16 25 O -0.38 -7.84 11.72 -148.98 -1.75 -9.59 16 26 C 0.10 1.81 7.63 71.37 0.54 2.35 16 27 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 2.75 8.11 -2.39 -0.02 2.73 16 31 H 0.08 2.62 7.36 -2.39 -0.02 2.60 16 32 H 0.05 2.00 7.08 -2.39 -0.02 1.98 16 33 H 0.05 2.53 5.23 -2.39 -0.01 2.51 16 34 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.43 11.27 8.31 -92.71 -0.77 10.50 16 36 H 0.11 4.89 6.32 -2.91 -0.02 4.87 16 37 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -72.06 351.42 2.24 -69.82 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.23 Total: 24.13 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 5.32 Total: 19.06 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -3.37 Total: -105.19 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -1.83 Total: -53.50 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Total: -72.06 2.24 -69.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124073068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.548 kcal (2) G-P(sol) polarization free energy of solvation -72.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds