Wall clock time and date at job start Tue Mar 31 2020 13:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47367 * 2 1 4 4 C 1.34647 * 117.00272 * 179.97438 * 3 2 1 5 5 O 1.21520 * 119.99675 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00467 * 179.97438 * 4 3 2 7 7 C 1.39945 * 120.00610 * 185.31368 * 6 4 3 8 8 C 1.38920 * 120.04493 * 213.27821 * 7 6 4 9 9 C 1.38127 * 120.03891 * 180.02562 * 8 7 6 10 10 C 1.38212 * 120.12532 * 359.71857 * 9 8 7 11 11 C 1.38771 * 120.08176 * 0.56213 * 10 9 8 12 12 O 1.35899 * 120.02009 * 179.71944 * 11 10 9 13 13 C 1.42900 * 117.00098 * 359.72002 * 12 11 10 14 14 C 1.52994 * 109.47189 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.46815 * 305.00199 * 14 13 12 16 16 C 1.47200 * 109.47097 * 64.99712 * 14 13 12 17 17 N 9.36857 * 146.39944 * 279.29272 * 2 1 3 18 18 C 1.52996 * 109.47234 * 185.00338 * 14 13 12 19 19 C 1.50703 * 109.47188 * 174.99932 * 18 14 13 20 20 H 1.07995 * 120.00144 * 359.97438 * 19 18 14 21 21 C 1.37874 * 120.00134 * 179.71909 * 19 18 14 22 22 N 1.31521 * 120.00014 * 0.28075 * 21 19 18 23 23 Si 1.86802 * 120.00271 * 180.27509 * 21 19 18 24 24 H 1.48492 * 109.46930 * 90.00164 * 23 21 19 25 25 H 1.48498 * 109.47099 * 210.00274 * 23 21 19 26 26 H 1.48502 * 109.46735 * 330.00153 * 23 21 19 27 27 C 1.38625 * 119.95664 * 359.43973 * 11 10 9 28 28 H 1.09001 * 109.47160 * 300.00178 * 1 2 3 29 29 H 1.08998 * 109.47075 * 59.99662 * 1 2 3 30 30 H 1.09003 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47160 * 239.99822 * 2 1 3 32 32 H 1.08998 * 109.47075 * 120.00337 * 2 1 3 33 33 H 0.97003 * 119.99800 * 5.32522 * 6 4 3 34 34 H 1.07998 * 119.98422 * 0.02562 * 8 7 6 35 35 H 1.08000 * 119.94022 * 180.02562 * 9 8 7 36 36 H 1.07996 * 119.96204 * 180.29563 * 10 9 8 37 37 H 1.09002 * 109.47001 * 60.00428 * 13 12 11 38 38 H 1.08998 * 109.46905 * 300.00543 * 13 12 11 39 39 H 1.08993 * 109.47611 * 54.99611 * 18 14 13 40 40 H 1.09000 * 109.47125 * 294.99475 * 18 14 13 41 41 H 0.97001 * 120.00120 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.06330 * 180.25698 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 0.0005 5 8 4.0891 0.5816 0.0005 6 7 3.8641 2.7907 0.0000 7 6 5.2467 2.9760 -0.1116 8 6 5.8603 4.0410 0.5358 9 6 7.2249 4.2241 0.4251 10 6 7.9840 3.3457 -0.3248 11 6 7.3756 2.2835 -0.9784 12 8 8.1225 1.4239 -1.7201 13 6 9.5272 1.6773 -1.7880 14 6 10.1957 0.6137 -2.6613 15 1 9.9507 -0.3771 -2.2786 16 6 9.7100 0.7389 -4.0452 17 7 9.3332 0.8372 -5.1165 18 6 11.7127 0.8105 -2.6333 19 6 12.3785 -0.3083 -3.3923 20 1 11.7796 -1.0825 -3.8486 21 6 13.7519 -0.3406 -3.5087 22 7 14.4814 0.6019 -2.9526 23 14 14.5768 -1.7233 -4.4560 24 1 14.7137 -1.3331 -5.8822 25 1 15.9218 -1.9826 -3.8825 26 1 13.7506 -2.9532 -4.3562 27 6 6.0064 2.0965 -0.8697 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.2765 3.5587 0.0773 34 1 5.2700 4.7263 1.1261 35 1 7.7003 5.0524 0.9294 36 1 9.0514 3.4886 -0.4057 37 1 9.9515 1.6431 -0.7845 38 1 9.6981 2.6627 -2.2214 39 1 12.0607 0.8063 -1.6005 40 1 11.9640 1.7642 -3.0975 41 1 15.4477 0.5794 -3.0348 42 1 5.5317 1.2680 -1.3743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126218405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:32 Heat of formation + Delta-G solvation = -74.116679 kcal Electronic energy + Delta-G solvation = -25017.112906 eV Core-core repulsion = 21155.720240 eV Total energy + Delta-G solvation = -3861.392666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 5.41 seconds Orbital eigenvalues (eV) -41.18730 -39.99459 -38.32011 -36.85300 -36.10605 -34.86563 -33.78108 -32.09807 -32.05165 -30.36517 -29.35666 -27.20087 -24.62357 -23.86901 -23.01332 -22.21865 -21.85211 -21.09332 -19.32511 -18.38512 -17.29354 -17.02248 -16.87710 -16.61708 -16.08057 -15.81955 -15.43218 -15.16944 -14.64238 -14.54370 -14.14471 -13.74592 -13.62039 -13.22652 -13.16067 -12.99776 -12.67098 -12.43614 -12.26883 -12.03670 -12.03091 -11.92747 -11.62139 -11.29566 -11.17334 -10.99046 -10.91392 -10.80436 -10.65049 -10.59917 -10.36836 -10.27432 -9.72019 -9.33570 -8.53365 -8.50206 -8.14231 -6.14800 -4.18296 1.09792 1.38079 1.71630 2.48298 3.19921 3.28404 3.34985 3.39309 3.57331 3.64514 3.71566 3.81769 4.38127 4.54690 4.57228 4.68052 4.75604 4.89558 4.97695 5.06077 5.12076 5.14359 5.23664 5.34042 5.36090 5.43840 5.45636 5.49268 5.57914 5.76077 5.96362 6.04175 6.13553 6.19898 6.29401 6.33617 6.40372 6.71353 6.97176 7.31407 7.40715 7.50821 7.80310 7.92324 8.15043 8.40831 8.85651 9.47586 10.96075 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.002339 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.627452 B =11970.487135 C =12978.239106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 O -0.369 6.369 4 C 0.646 3.354 5 O -0.544 6.544 6 N -0.649 5.649 7 C 0.192 3.808 8 C -0.185 4.185 9 C -0.058 4.058 10 C -0.220 4.220 11 C 0.161 3.839 12 O -0.311 6.311 13 C 0.065 3.935 14 C 0.012 3.988 15 H 0.114 0.886 16 C 0.243 3.757 17 N -0.468 5.468 18 C 0.034 3.966 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.063 3.937 22 N -0.891 5.891 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.272 1.272 27 C -0.159 4.159 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.418 0.582 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.221 6.970 11.935 27.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.006 3.994 3 O -0.284 6.284 4 C 0.400 3.600 5 O -0.431 6.431 6 N -0.301 5.301 7 C 0.099 3.901 8 C -0.206 4.206 9 C -0.077 4.077 10 C -0.240 4.240 11 C 0.114 3.886 12 O -0.224 6.224 13 C -0.011 4.011 14 C -0.010 4.010 15 H 0.132 0.868 16 C -0.074 4.074 17 N -0.145 5.145 18 C -0.004 4.004 19 C -0.566 4.566 20 H 0.077 0.923 21 C -0.139 4.139 22 N -0.529 5.529 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.179 4.179 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.254 0.746 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -24.430 6.412 10.211 27.243 hybrid contribution 0.614 -0.372 -0.002 0.717 sum -23.816 6.040 10.209 26.607 Atomic orbital electron populations 1.21839 0.92337 1.03281 1.03556 1.23046 0.94908 0.78153 1.03270 1.86224 1.21498 1.33905 1.86776 1.18067 0.81474 0.84087 0.76381 1.91089 1.59441 1.39312 1.53241 1.41909 1.06253 1.06451 1.75441 1.17025 0.80538 0.96371 0.96189 1.20653 0.95276 1.00566 1.04070 1.20697 0.92595 0.97927 0.96452 1.21405 1.01318 0.97554 1.03704 1.18744 0.90595 0.88933 0.90316 1.86143 1.20909 1.49704 1.65642 1.23111 0.77246 0.99660 1.01068 1.19309 0.99281 1.00165 0.82219 0.86803 1.29086 0.91084 0.92330 0.94866 1.81172 1.11578 1.09523 1.12231 1.19176 0.83188 0.98727 0.99307 1.21081 0.91745 1.09420 1.34322 0.92278 1.24949 0.97427 0.96125 0.95436 1.69933 1.05891 1.33105 1.43973 0.86543 0.78797 0.82385 0.80089 1.20610 1.21044 1.19667 1.20279 0.91456 1.03062 1.03145 0.91439 0.91391 0.89772 0.90760 0.90829 0.74554 0.85565 0.85099 0.84622 0.89732 0.91246 0.93896 0.95231 0.92690 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.29 37.16 0.38 -0.34 16 2 C 0.08 0.62 6.19 37.16 0.23 0.85 16 3 O -0.37 -3.53 10.27 -40.34 -0.41 -3.94 16 4 C 0.65 7.59 8.49 54.05 0.46 8.05 16 5 O -0.54 -8.31 13.82 -19.29 -0.27 -8.57 16 6 N -0.65 -6.26 5.35 -14.28 -0.08 -6.34 16 7 C 0.19 2.23 6.28 -83.71 -0.53 1.71 16 8 C -0.19 -1.77 9.96 -39.37 -0.39 -2.16 16 9 C -0.06 -0.57 10.03 -39.63 -0.40 -0.97 16 10 C -0.22 -2.67 9.04 -39.39 -0.36 -3.03 16 11 C 0.16 2.36 6.68 -39.24 -0.26 2.10 16 12 O -0.31 -5.09 9.87 -19.42 -0.19 -5.28 16 13 C 0.06 1.00 4.09 37.15 0.15 1.15 16 14 C 0.01 0.22 2.45 -93.41 -0.23 -0.01 16 15 H 0.11 2.03 8.14 -51.93 -0.42 1.60 16 16 C 0.24 5.19 13.72 -20.63 -0.28 4.90 16 17 N -0.47 -10.79 18.56 42.31 0.79 -10.01 16 18 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 19 C -0.53 -13.89 8.60 -34.44 -0.30 -14.18 16 20 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.06 13.29 55.43 0.74 -24.33 16 23 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 C -0.16 -2.30 8.59 -39.25 -0.34 -2.64 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.42 2.54 8.92 -40.82 -0.36 2.18 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.14 1.48 6.29 -52.49 -0.33 1.15 16 37 H 0.08 1.12 7.65 -51.93 -0.40 0.72 16 38 H 0.07 1.00 7.67 -51.93 -0.40 0.61 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.14 2.29 6.41 -52.49 -0.34 1.96 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -33.21 370.40 -6.53 -39.74 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.59 Total: -0.72 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.08 Total: -2.31 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 1.45 Total: -40.67 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.87 Total: -17.80 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.21 -6.53 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126218405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.376 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.41 seconds