Wall clock time and date at job start Tue Mar 31 2020 13:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47367 * 2 1 4 4 C 1.34647 * 117.00272 * 179.97438 * 3 2 1 5 5 O 1.21520 * 119.99675 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00467 * 179.97438 * 4 3 2 7 7 C 1.39945 * 120.00610 * 185.31368 * 6 4 3 8 8 C 1.38920 * 120.04493 * 213.27821 * 7 6 4 9 9 C 1.38127 * 120.03891 * 180.02562 * 8 7 6 10 10 C 1.38212 * 120.12532 * 359.71857 * 9 8 7 11 11 C 1.38771 * 120.08176 * 0.56213 * 10 9 8 12 12 O 1.35899 * 120.02009 * 179.71944 * 11 10 9 13 13 C 1.42900 * 117.00098 * 359.72002 * 12 11 10 14 14 C 1.52994 * 109.47189 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.46815 * 305.00199 * 14 13 12 16 16 C 1.47200 * 109.47097 * 64.99712 * 14 13 12 17 17 N 9.36857 * 146.39944 * 279.29272 * 2 1 3 18 18 C 1.52996 * 109.47234 * 185.00338 * 14 13 12 19 19 C 1.50703 * 109.47188 * 174.99932 * 18 14 13 20 20 H 1.07995 * 120.00144 * 359.97438 * 19 18 14 21 21 C 1.37874 * 120.00134 * 179.71909 * 19 18 14 22 22 N 1.31521 * 120.00014 * 0.28075 * 21 19 18 23 23 Si 1.86802 * 120.00271 * 180.27509 * 21 19 18 24 24 H 1.48492 * 109.46930 * 90.00164 * 23 21 19 25 25 H 1.48498 * 109.47099 * 210.00274 * 23 21 19 26 26 H 1.48502 * 109.46735 * 330.00153 * 23 21 19 27 27 C 1.38625 * 119.95664 * 359.43973 * 11 10 9 28 28 H 1.09001 * 109.47160 * 300.00178 * 1 2 3 29 29 H 1.08998 * 109.47075 * 59.99662 * 1 2 3 30 30 H 1.09003 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47160 * 239.99822 * 2 1 3 32 32 H 1.08998 * 109.47075 * 120.00337 * 2 1 3 33 33 H 0.97003 * 119.99800 * 5.32522 * 6 4 3 34 34 H 1.07998 * 119.98422 * 0.02562 * 8 7 6 35 35 H 1.08000 * 119.94022 * 180.02562 * 9 8 7 36 36 H 1.07996 * 119.96204 * 180.29563 * 10 9 8 37 37 H 1.09002 * 109.47001 * 60.00428 * 13 12 11 38 38 H 1.08998 * 109.46905 * 300.00543 * 13 12 11 39 39 H 1.08993 * 109.47611 * 54.99611 * 18 14 13 40 40 H 1.09000 * 109.47125 * 294.99475 * 18 14 13 41 41 H 0.97001 * 120.00120 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.06330 * 180.25698 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 0.0005 5 8 4.0891 0.5816 0.0005 6 7 3.8641 2.7907 0.0000 7 6 5.2467 2.9760 -0.1116 8 6 5.8603 4.0410 0.5358 9 6 7.2249 4.2241 0.4251 10 6 7.9840 3.3457 -0.3248 11 6 7.3756 2.2835 -0.9784 12 8 8.1225 1.4239 -1.7201 13 6 9.5272 1.6773 -1.7880 14 6 10.1957 0.6137 -2.6613 15 1 9.9507 -0.3771 -2.2786 16 6 9.7100 0.7389 -4.0452 17 7 9.3332 0.8372 -5.1165 18 6 11.7127 0.8105 -2.6333 19 6 12.3785 -0.3083 -3.3923 20 1 11.7796 -1.0825 -3.8486 21 6 13.7519 -0.3406 -3.5087 22 7 14.4814 0.6019 -2.9526 23 14 14.5768 -1.7233 -4.4560 24 1 14.7137 -1.3331 -5.8822 25 1 15.9218 -1.9826 -3.8825 26 1 13.7506 -2.9532 -4.3562 27 6 6.0064 2.0965 -0.8697 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.2765 3.5587 0.0773 34 1 5.2700 4.7263 1.1261 35 1 7.7003 5.0524 0.9294 36 1 9.0514 3.4886 -0.4057 37 1 9.9515 1.6431 -0.7845 38 1 9.6981 2.6627 -2.2214 39 1 12.0607 0.8063 -1.6005 40 1 11.9640 1.7642 -3.0975 41 1 15.4477 0.5794 -3.0348 42 1 5.5317 1.2680 -1.3743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126218405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:28 Heat of formation + Delta-G solvation = -94.942774 kcal Electronic energy + Delta-G solvation = -25018.015993 eV Core-core repulsion = 21155.720240 eV Total energy + Delta-G solvation = -3862.295753 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.07631 -41.00878 -39.33071 -38.02111 -37.44696 -35.86053 -35.57522 -33.83189 -32.66073 -31.39388 -30.24081 -28.87507 -25.82080 -24.96966 -23.91025 -23.52603 -23.07529 -22.03633 -20.20310 -19.38316 -18.74536 -18.44157 -17.92777 -17.76624 -17.03100 -16.91897 -16.55870 -16.48793 -16.19261 -15.45523 -15.12028 -14.87723 -14.72898 -14.53490 -14.40263 -14.14633 -13.83982 -13.69861 -13.56033 -13.23874 -13.04922 -13.00354 -12.81367 -12.63838 -12.56776 -12.45256 -12.34280 -12.16614 -11.96072 -11.67108 -11.58486 -11.52227 -11.29120 -11.25415 -10.56768 -9.48084 -9.06428 -8.21669 -6.29404 0.19006 0.47802 0.93417 1.39923 1.42280 1.51308 1.57474 1.80606 1.90696 2.17702 2.42545 2.81480 3.06035 3.08840 3.16099 3.83862 3.99307 4.00815 4.05751 4.14005 4.19389 4.23485 4.31225 4.34217 4.47663 4.50288 4.58687 4.66835 4.75121 4.82560 4.91380 5.09605 5.21816 5.24596 5.36946 5.37637 5.42109 5.51159 5.55559 5.75476 5.83531 6.14949 6.18452 6.45377 6.68489 6.83210 7.09585 7.38858 8.89119 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.002339 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.627452 B =11970.487135 C =12978.239106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 O -0.363 6.363 4 C 0.643 3.357 5 O -0.586 6.586 6 N -0.634 5.634 7 C 0.185 3.815 8 C -0.168 4.168 9 C -0.051 4.051 10 C -0.225 4.225 11 C 0.133 3.867 12 O -0.335 6.335 13 C 0.074 3.926 14 C 0.020 3.980 15 H 0.125 0.875 16 C 0.252 3.748 17 N -0.503 5.503 18 C 0.042 3.958 19 C -0.542 4.542 20 H 0.053 0.947 21 C 0.014 3.986 22 N -0.919 5.919 23 Si 0.948 3.052 24 H -0.284 1.284 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.185 4.185 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.436 0.564 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.148 0.852 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.012 0.988 41 H 0.265 0.735 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.268 8.389 13.635 29.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.003 4.003 3 O -0.277 6.277 4 C 0.398 3.602 5 O -0.475 6.475 6 N -0.287 5.287 7 C 0.092 3.908 8 C -0.188 4.188 9 C -0.070 4.070 10 C -0.244 4.244 11 C 0.087 3.913 12 O -0.249 6.249 13 C -0.002 4.002 14 C -0.002 4.002 15 H 0.142 0.858 16 C -0.064 4.064 17 N -0.181 5.181 18 C 0.004 3.996 19 C -0.580 4.580 20 H 0.071 0.929 21 C -0.185 4.185 22 N -0.558 5.558 23 Si 0.774 3.226 24 H -0.210 1.210 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.207 4.207 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.276 0.724 34 H 0.184 0.816 35 H 0.186 0.814 36 H 0.165 0.835 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -25.523 7.858 11.919 29.244 hybrid contribution 0.840 -0.777 -0.488 1.244 sum -24.683 7.081 11.432 28.108 Atomic orbital electron populations 1.21850 0.89702 1.04636 1.03969 1.23317 0.96873 0.77305 1.02770 1.86254 1.20091 1.35014 1.86341 1.18307 0.81871 0.84220 0.75842 1.91068 1.60494 1.40818 1.55137 1.41805 1.05978 1.06470 1.74484 1.17202 0.81122 0.96502 0.95988 1.21099 0.95572 0.99599 1.02572 1.21177 0.92659 0.97943 0.95180 1.21638 1.02186 0.97036 1.03529 1.18949 0.90559 0.90096 0.91712 1.86065 1.21073 1.50974 1.66822 1.22964 0.77291 0.98407 1.01499 1.19244 0.97245 1.02152 0.81526 0.85776 1.29634 0.90258 0.91250 0.95232 1.81159 1.12731 1.10860 1.13326 1.18973 0.85404 0.96581 0.98649 1.21478 0.92128 1.10146 1.34245 0.92909 1.25662 0.98248 0.98173 0.96430 1.70008 1.06137 1.34489 1.45195 0.85696 0.78241 0.80105 0.78562 1.20982 1.20175 1.19151 1.20246 0.92008 1.03551 1.04853 0.90726 0.91192 0.87930 0.91708 0.91053 0.72359 0.81623 0.81386 0.83472 0.87260 0.90450 0.93485 0.96959 0.92562 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 10.29 71.98 0.74 -0.44 16 2 C 0.07 1.09 6.19 71.98 0.45 1.54 16 3 O -0.36 -6.80 10.27 -55.56 -0.57 -7.37 16 4 C 0.64 15.20 8.49 129.79 1.10 16.30 16 5 O -0.59 -18.71 13.82 19.78 0.27 -18.43 16 6 N -0.63 -11.49 5.35 -429.51 -2.30 -13.79 16 7 C 0.19 4.09 6.28 38.13 0.24 4.33 16 8 C -0.17 -2.62 9.96 22.41 0.22 -2.39 16 9 C -0.05 -0.82 10.03 22.24 0.22 -0.60 16 10 C -0.22 -4.99 9.04 22.39 0.20 -4.79 16 11 C 0.13 3.89 6.68 22.49 0.15 4.04 16 12 O -0.34 -11.13 9.87 -92.42 -0.91 -12.04 16 13 C 0.07 2.22 4.09 71.98 0.29 2.51 16 14 C 0.02 0.74 2.45 -12.60 -0.03 0.71 16 15 H 0.12 4.40 8.14 -2.38 -0.02 4.38 16 16 C 0.25 10.90 13.72 89.40 1.23 12.12 16 17 N -0.50 -23.61 18.56 20.05 0.37 -23.24 16 18 C 0.04 1.91 4.42 29.85 0.13 2.04 16 19 C -0.54 -28.59 8.60 25.60 0.22 -28.37 16 20 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 21 C 0.01 0.78 5.46 84.65 0.46 1.24 16 22 N -0.92 -51.71 13.29 21.45 0.28 -51.43 16 23 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C -0.19 -5.52 8.59 22.49 0.19 -5.32 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.44 4.32 8.92 -92.71 -0.83 3.49 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.15 2.84 6.29 -2.91 -0.02 2.82 16 37 H 0.11 2.71 7.65 -2.39 -0.02 2.69 16 38 H 0.08 2.17 7.67 -2.39 -0.02 2.16 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 42 H 0.11 3.94 6.41 -2.91 -0.02 3.92 16 Total: -1.00 -73.57 370.40 5.23 -68.35 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.22 Total: 9.61 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.82 Total: 2.92 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -1.64 Total: -88.45 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.21 Total: -37.85 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -73.57 5.23 -68.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126218405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.597 kcal (2) G-P(sol) polarization free energy of solvation -73.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds