Wall clock time and date at job start Tue Mar 31 2020 12:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47159 * 2 1 4 4 O 1.42898 * 109.47091 * 180.02562 * 3 2 1 5 5 C 1.35989 * 116.99759 * 180.02562 * 4 3 2 6 6 C 1.38699 * 120.00129 * 359.73297 * 5 4 3 7 7 C 1.38127 * 120.00054 * 179.76675 * 6 5 4 8 8 C 1.38705 * 119.99737 * 0.50011 * 7 6 5 9 9 O 1.35988 * 119.99777 * 179.72754 * 8 7 6 10 10 C 1.42895 * 116.99794 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.46849 * 180.02562 * 10 9 8 12 12 O 1.21297 * 120.00229 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00144 * 180.02562 * 11 10 9 14 14 C 1.37095 * 120.00026 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00404 * 17.72370 * 14 13 11 16 16 C 1.38950 * 120.00060 * 197.72385 * 14 13 11 17 17 N 1.31411 * 120.00212 * 21.41541 * 16 14 13 18 18 Si 1.86803 * 120.00263 * 201.41709 * 16 14 13 19 19 H 1.48496 * 109.46828 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47402 * 119.99764 * 18 16 14 21 21 H 1.48503 * 109.47029 * 240.00033 * 18 16 14 22 22 C 1.46504 * 120.00164 * 0.02562 * 13 11 10 23 23 C 1.47204 * 109.46838 * 84.22952 * 22 13 11 24 24 N 8.84777 * 130.09788 * 201.17077 * 3 1 2 25 25 C 1.38694 * 120.00028 * 359.75021 * 8 7 6 26 26 C 1.38132 * 120.00007 * 359.97438 * 25 8 7 27 27 H 1.09007 * 109.46884 * 299.99484 * 1 2 3 28 28 H 1.08995 * 109.47470 * 59.99446 * 1 2 3 29 29 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46951 * 240.01002 * 2 1 3 31 31 H 1.08995 * 109.47470 * 120.00554 * 2 1 3 32 32 H 1.09007 * 109.46801 * 60.00465 * 3 2 1 33 33 H 1.08995 * 109.47382 * 300.00608 * 3 2 1 34 34 H 1.07999 * 119.99942 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.00532 * 180.22696 * 7 6 5 36 36 H 1.08998 * 109.47703 * 300.00231 * 10 9 8 37 37 H 1.09001 * 109.47381 * 60.00879 * 10 9 8 38 38 H 0.96999 * 120.00775 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.47407 * 204.22801 * 22 13 11 40 40 H 1.08997 * 109.46563 * 324.23149 * 22 13 11 41 41 H 1.08002 * 119.99675 * 179.97438 * 25 8 7 42 42 H 1.08005 * 119.99922 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0863 2.6542 -0.0001 6 6 3.3309 3.8174 -0.0047 7 6 3.9580 5.0481 0.0006 8 6 5.3431 5.1207 0.0001 9 8 5.9604 6.3324 -0.0003 10 6 5.1205 7.4884 0.0005 11 6 5.9746 8.7299 -0.0006 12 8 7.1838 8.6342 -0.0025 13 7 5.3950 9.9467 0.0004 14 6 6.1721 11.0762 -0.0012 15 1 7.2116 11.0161 -0.2879 16 6 5.6223 12.2983 0.3661 17 7 4.5318 12.3347 1.0985 18 14 6.4332 13.8896 -0.1813 19 1 7.6390 13.5780 -0.9900 20 1 5.4767 14.6763 -1.0008 21 1 6.8289 14.6796 1.0123 22 6 3.9346 10.0624 0.0032 23 6 3.4371 9.9622 1.3850 24 7 3.0493 9.8859 2.4443 25 6 6.0985 3.9575 -0.0006 26 6 5.4714 2.7268 -0.0002 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 2.2524 3.7609 -0.0091 35 1 3.3698 5.9539 0.0007 36 1 4.4904 7.4805 -0.8889 37 1 4.4920 7.4803 0.8911 38 1 4.1481 13.1878 1.3552 39 1 3.6455 11.0253 -0.4181 40 1 3.5054 9.2599 -0.5966 41 1 7.1770 4.0141 -0.0014 42 1 6.0596 1.8210 -0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126647478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:52 Heat of formation + Delta-G solvation = -45.943536 kcal Electronic energy + Delta-G solvation = -25469.084591 eV Core-core repulsion = 21608.913604 eV Total energy + Delta-G solvation = -3860.170987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.44810 -39.38928 -38.42332 -36.47538 -35.82276 -34.47509 -34.09478 -32.03126 -31.18641 -29.53204 -28.05273 -27.38785 -26.67094 -24.64948 -23.14322 -21.96564 -21.45290 -19.51680 -18.50519 -18.07781 -17.69404 -16.69691 -16.51453 -16.39847 -15.95959 -15.61194 -14.91938 -14.80304 -14.40273 -14.33017 -14.19316 -13.57482 -13.45880 -13.37721 -13.14302 -13.03611 -12.65282 -12.50914 -12.36444 -12.12353 -11.96277 -11.77967 -11.62003 -11.45465 -11.36393 -11.23912 -11.05528 -10.72292 -10.71085 -10.45633 -10.42443 -10.27146 -9.36867 -9.09948 -8.69663 -8.15965 -7.68857 -6.59840 -4.09577 1.23427 1.48720 2.99303 3.02945 3.11328 3.20569 3.29526 3.47304 3.72765 3.74562 3.87774 4.07443 4.50317 4.51683 4.66630 4.74848 4.77806 4.83429 4.84651 5.01186 5.05137 5.05695 5.14349 5.24506 5.28670 5.35396 5.43770 5.50354 5.56347 5.56483 5.67714 5.77258 5.87032 5.93547 6.04217 6.25173 6.35220 6.38205 6.56617 7.26886 7.39246 7.53582 7.80509 8.18005 8.61246 8.88649 9.06806 9.58665 10.46457 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023491 B = 0.002496 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.675701 B =11214.730994 C =12122.100114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.058 3.942 4 O -0.319 6.319 5 C 0.083 3.917 6 C -0.166 4.166 7 C -0.173 4.173 8 C 0.104 3.896 9 O -0.284 6.284 10 C 0.047 3.953 11 C 0.457 3.543 12 O -0.549 6.549 13 N -0.438 5.438 14 C -0.312 4.312 15 H 0.112 0.888 16 C 0.032 3.968 17 N -0.876 5.876 18 Si 0.930 3.070 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.282 1.282 22 C 0.217 3.783 23 C 0.242 3.758 24 N -0.466 5.466 25 C -0.112 4.112 26 C -0.111 4.111 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.274 0.726 39 H 0.132 0.868 40 H 0.083 0.917 41 H 0.140 0.860 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 -17.938 -5.909 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.234 6.234 5 C 0.039 3.961 6 C -0.185 4.185 7 C -0.192 4.192 8 C 0.058 3.942 9 O -0.196 6.196 10 C -0.032 4.032 11 C 0.244 3.756 12 O -0.429 6.429 13 N -0.161 5.161 14 C -0.439 4.439 15 H 0.129 0.871 16 C -0.172 4.172 17 N -0.515 5.515 18 Si 0.756 3.244 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.208 1.208 22 C 0.090 3.910 23 C -0.077 4.077 24 N -0.145 5.145 25 C -0.131 4.131 26 C -0.129 4.129 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.158 0.842 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.702 -18.080 -4.274 20.516 hybrid contribution -0.219 1.328 -0.385 1.399 sum -8.921 -16.753 -4.659 19.543 Atomic orbital electron populations 1.21696 0.94320 1.02469 1.02292 1.21475 0.95978 0.94981 1.03632 1.22828 0.78905 0.98599 1.01360 1.86028 1.20868 1.26948 1.89508 1.18813 0.92211 0.83989 1.01099 1.20992 0.99814 0.91687 1.06011 1.21121 0.93514 0.98527 1.06025 1.19068 0.90988 0.86071 0.98100 1.86212 1.34253 1.10983 1.88183 1.22618 0.93541 0.84919 1.02125 1.19557 0.88601 0.83407 0.84071 1.90597 1.13989 1.85649 1.52706 1.43560 1.03483 1.04737 1.64278 1.19783 0.96696 0.82980 1.44406 0.87084 1.25312 0.96982 0.99978 0.94903 1.69858 1.22387 1.27448 1.31822 0.85800 0.79360 0.80591 0.78640 1.18975 1.20367 1.20824 1.18808 0.82166 1.04702 0.85368 1.29068 0.92526 0.90577 0.95532 1.80692 1.09917 1.11926 1.11989 1.20273 1.00518 0.88862 1.03450 1.20188 0.91225 0.97712 1.03822 0.92326 0.92338 0.91785 0.90881 0.90880 0.92168 0.92172 0.85443 0.85039 0.90177 0.90493 0.91520 0.85029 0.89963 0.84225 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.12 -0.82 6.30 -26.73 -0.17 -0.98 16 3 C 0.06 0.49 4.74 37.16 0.18 0.67 16 4 O -0.32 -3.65 10.14 -19.71 -0.20 -3.85 16 5 C 0.08 1.04 6.69 -39.24 -0.26 0.78 16 6 C -0.17 -2.00 9.03 -39.45 -0.36 -2.36 16 7 C -0.17 -2.34 9.03 -39.45 -0.36 -2.69 16 8 C 0.10 1.62 6.69 -39.24 -0.26 1.36 16 9 O -0.28 -5.33 9.67 -39.61 -0.38 -5.71 16 10 C 0.05 0.83 3.82 36.01 0.14 0.97 16 11 C 0.46 10.40 7.64 -10.99 -0.08 10.31 16 12 O -0.55 -14.80 16.15 -14.37 -0.23 -15.03 16 13 N -0.44 -9.95 2.60 -117.93 -0.31 -10.26 16 14 C -0.31 -7.84 9.32 -14.93 -0.14 -7.98 16 15 H 0.11 2.97 7.39 -52.49 -0.39 2.58 16 16 C 0.03 0.77 4.87 -17.47 -0.08 0.69 16 17 N -0.88 -21.44 9.48 55.50 0.53 -20.91 16 18 Si 0.93 19.14 29.60 -169.99 -5.03 14.10 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 C 0.22 4.06 4.91 -6.83 -0.03 4.03 16 23 C 0.24 5.10 12.93 -20.93 -0.27 4.83 16 24 N -0.47 -10.68 18.50 41.95 0.78 -9.90 16 25 C -0.11 -1.55 9.98 -39.45 -0.39 -1.95 16 26 C -0.11 -1.37 9.98 -39.45 -0.39 -1.76 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 33 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 34 H 0.13 1.23 6.29 -52.49 -0.33 0.90 16 35 H 0.13 1.58 6.29 -52.49 -0.33 1.25 16 36 H 0.08 1.13 6.93 -51.93 -0.36 0.77 16 37 H 0.08 1.30 7.03 -51.93 -0.37 0.94 16 38 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 39 H 0.13 2.51 6.46 -51.93 -0.34 2.17 16 40 H 0.08 1.12 6.68 -51.93 -0.35 0.77 16 41 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -31.88 360.85 -6.88 -38.76 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.35 Total: 1.85 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -2.12 Total: 5.50 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 1.00 Total: -41.07 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.81 Total: -24.59 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.88 -6.88 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126647478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.179 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds