Wall clock time and date at job start Tue Mar 31 2020 12:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47159 * 2 1 4 4 O 1.42898 * 109.47091 * 180.02562 * 3 2 1 5 5 C 1.35989 * 116.99759 * 180.02562 * 4 3 2 6 6 C 1.38699 * 120.00129 * 359.73297 * 5 4 3 7 7 C 1.38127 * 120.00054 * 179.76675 * 6 5 4 8 8 C 1.38705 * 119.99737 * 0.50011 * 7 6 5 9 9 O 1.35988 * 119.99777 * 179.72754 * 8 7 6 10 10 C 1.42895 * 116.99794 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.46849 * 180.02562 * 10 9 8 12 12 O 1.21297 * 120.00229 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00144 * 180.02562 * 11 10 9 14 14 C 1.37095 * 120.00026 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00404 * 17.72370 * 14 13 11 16 16 C 1.38950 * 120.00060 * 197.72385 * 14 13 11 17 17 N 1.31411 * 120.00212 * 21.41541 * 16 14 13 18 18 Si 1.86803 * 120.00263 * 201.41709 * 16 14 13 19 19 H 1.48496 * 109.46828 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47402 * 119.99764 * 18 16 14 21 21 H 1.48503 * 109.47029 * 240.00033 * 18 16 14 22 22 C 1.46504 * 120.00164 * 0.02562 * 13 11 10 23 23 C 1.47204 * 109.46838 * 84.22952 * 22 13 11 24 24 N 8.84777 * 130.09788 * 201.17077 * 3 1 2 25 25 C 1.38694 * 120.00028 * 359.75021 * 8 7 6 26 26 C 1.38132 * 120.00007 * 359.97438 * 25 8 7 27 27 H 1.09007 * 109.46884 * 299.99484 * 1 2 3 28 28 H 1.08995 * 109.47470 * 59.99446 * 1 2 3 29 29 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46951 * 240.01002 * 2 1 3 31 31 H 1.08995 * 109.47470 * 120.00554 * 2 1 3 32 32 H 1.09007 * 109.46801 * 60.00465 * 3 2 1 33 33 H 1.08995 * 109.47382 * 300.00608 * 3 2 1 34 34 H 1.07999 * 119.99942 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.00532 * 180.22696 * 7 6 5 36 36 H 1.08998 * 109.47703 * 300.00231 * 10 9 8 37 37 H 1.09001 * 109.47381 * 60.00879 * 10 9 8 38 38 H 0.96999 * 120.00775 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.47407 * 204.22801 * 22 13 11 40 40 H 1.08997 * 109.46563 * 324.23149 * 22 13 11 41 41 H 1.08002 * 119.99675 * 179.97438 * 25 8 7 42 42 H 1.08005 * 119.99922 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0863 2.6542 -0.0001 6 6 3.3309 3.8174 -0.0047 7 6 3.9580 5.0481 0.0006 8 6 5.3431 5.1207 0.0001 9 8 5.9604 6.3324 -0.0003 10 6 5.1205 7.4884 0.0005 11 6 5.9746 8.7299 -0.0006 12 8 7.1838 8.6342 -0.0025 13 7 5.3950 9.9467 0.0004 14 6 6.1721 11.0762 -0.0012 15 1 7.2116 11.0161 -0.2879 16 6 5.6223 12.2983 0.3661 17 7 4.5318 12.3347 1.0985 18 14 6.4332 13.8896 -0.1813 19 1 7.6390 13.5780 -0.9900 20 1 5.4767 14.6763 -1.0008 21 1 6.8289 14.6796 1.0123 22 6 3.9346 10.0624 0.0032 23 6 3.4371 9.9622 1.3850 24 7 3.0493 9.8859 2.4443 25 6 6.0985 3.9575 -0.0006 26 6 5.4714 2.7268 -0.0002 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 2.2524 3.7609 -0.0091 35 1 3.3698 5.9539 0.0007 36 1 4.4904 7.4805 -0.8889 37 1 4.4920 7.4803 0.8911 38 1 4.1481 13.1878 1.3552 39 1 3.6455 11.0253 -0.4181 40 1 3.5054 9.2599 -0.5966 41 1 7.1770 4.0141 -0.0014 42 1 6.0596 1.8210 -0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126647478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:51 Heat of formation + Delta-G solvation = -63.798303 kcal Electronic energy + Delta-G solvation = -25469.858831 eV Core-core repulsion = 21608.913604 eV Total energy + Delta-G solvation = -3860.945228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.53142 -40.74829 -39.74256 -37.78317 -37.31879 -36.25496 -34.68291 -33.86707 -32.17785 -30.70685 -29.46220 -28.87778 -27.33425 -26.35876 -24.05228 -22.98886 -22.14994 -21.11793 -19.85186 -19.52555 -18.79124 -18.28631 -17.82362 -17.27459 -17.21791 -16.97207 -16.44814 -15.98931 -15.73386 -15.30397 -15.16400 -14.91523 -14.84285 -14.68310 -14.43089 -14.04637 -13.86525 -13.68517 -13.51705 -13.34888 -13.19230 -12.96640 -12.94051 -12.89401 -12.54860 -12.39487 -12.19953 -12.07061 -12.05533 -11.76470 -11.61366 -11.25966 -11.18349 -10.50466 -10.07455 -9.99583 -8.72742 -8.45114 -6.01400 0.26187 0.45920 1.35009 1.47652 1.58367 1.69353 1.85981 2.15314 2.22939 2.27718 2.39722 2.73520 2.95291 3.15611 3.51405 3.68553 3.82780 3.85008 3.98129 3.98785 4.04898 4.14872 4.19233 4.32266 4.39819 4.48913 4.53951 4.58369 4.60992 4.81647 4.86464 4.92574 5.05204 5.14484 5.21068 5.28022 5.34198 5.38353 5.46282 5.58434 5.92715 6.27028 6.39458 6.54457 6.95524 7.05388 7.25155 7.80546 8.58891 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023491 B = 0.002496 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.675701 B =11214.730994 C =12122.100114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.050 3.950 4 O -0.329 6.329 5 C 0.083 3.917 6 C -0.165 4.165 7 C -0.173 4.173 8 C 0.072 3.928 9 O -0.317 6.317 10 C 0.059 3.941 11 C 0.446 3.554 12 O -0.605 6.605 13 N -0.446 5.446 14 C -0.341 4.341 15 H 0.083 0.917 16 C 0.009 3.991 17 N -0.889 5.889 18 Si 0.989 3.011 19 H -0.272 1.272 20 H -0.260 1.260 21 H -0.289 1.289 22 C 0.216 3.784 23 C 0.254 3.746 24 N -0.501 5.501 25 C -0.121 4.121 26 C -0.114 4.114 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.277 0.723 39 H 0.131 0.869 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.265 -18.770 -6.791 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.025 4.025 4 O -0.243 6.243 5 C 0.038 3.962 6 C -0.184 4.184 7 C -0.191 4.191 8 C 0.027 3.973 9 O -0.230 6.230 10 C -0.019 4.019 11 C 0.235 3.765 12 O -0.489 6.489 13 N -0.167 5.167 14 C -0.468 4.468 15 H 0.100 0.900 16 C -0.194 4.194 17 N -0.527 5.527 18 Si 0.813 3.187 19 H -0.197 1.197 20 H -0.184 1.184 21 H -0.216 1.216 22 C 0.089 3.911 23 C -0.064 4.064 24 N -0.181 5.181 25 C -0.140 4.140 26 C -0.132 4.132 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.172 0.828 35 H 0.166 0.834 36 H 0.141 0.859 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.149 0.851 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.090 -18.926 -5.158 22.535 hybrid contribution 0.479 1.472 -0.085 1.551 sum -10.612 -17.454 -5.243 21.089 Atomic orbital electron populations 1.21690 0.93017 1.03162 1.02643 1.21488 0.96988 0.93883 1.03463 1.23114 0.77272 0.99956 1.02165 1.86034 1.22668 1.26441 1.89201 1.18996 0.92417 0.84658 1.00097 1.21265 1.01160 0.90926 1.05037 1.21315 0.92660 0.99807 1.05346 1.19324 0.92208 0.85134 1.00586 1.86152 1.35585 1.12084 1.89205 1.22478 0.92388 0.82604 1.04464 1.20462 0.88562 0.84900 0.82598 1.90554 1.16654 1.86708 1.55001 1.43711 1.05050 1.04283 1.63634 1.19650 0.96339 0.84710 1.46104 0.89956 1.25909 0.97379 1.01875 0.94259 1.69929 1.22947 1.28151 1.31691 0.84938 0.78631 0.77215 0.77885 1.19657 1.18407 1.21569 1.19215 0.79922 1.07136 0.84788 1.29508 0.91628 0.89437 0.95800 1.80697 1.11126 1.13313 1.13005 1.20422 1.00797 0.89152 1.03638 1.20386 0.91766 0.97752 1.03307 0.92098 0.91853 0.90984 0.90959 0.91208 0.91516 0.91094 0.82836 0.83417 0.85896 0.89523 0.91288 0.85133 0.83937 0.84198 0.82868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.44 16 2 C -0.12 -1.34 6.30 30.60 0.19 -1.15 16 3 C 0.05 0.70 4.74 71.98 0.34 1.05 16 4 O -0.33 -6.81 10.14 -93.43 -0.95 -7.76 16 5 C 0.08 1.90 6.69 22.49 0.15 2.05 16 6 C -0.17 -3.54 9.03 22.35 0.20 -3.34 16 7 C -0.17 -4.27 9.03 22.35 0.20 -4.07 16 8 C 0.07 2.20 6.69 22.49 0.15 2.35 16 9 O -0.32 -11.86 9.67 -74.37 -0.72 -12.58 16 10 C 0.06 2.00 3.82 71.24 0.27 2.28 16 11 C 0.45 20.43 7.64 87.66 0.67 21.10 16 12 O -0.60 -33.87 16.15 15.95 0.26 -33.61 16 13 N -0.45 -20.12 2.60 -645.41 -1.68 -21.80 16 14 C -0.34 -17.42 9.32 84.04 0.78 -16.63 16 15 H 0.08 4.61 7.39 -2.91 -0.02 4.59 16 16 C 0.01 0.41 4.87 84.93 0.41 0.82 16 17 N -0.89 -42.78 9.48 21.66 0.21 -42.57 16 18 Si 0.99 39.06 29.60 68.60 2.03 41.10 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 21 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 22 C 0.22 7.62 4.91 84.57 0.42 8.04 16 23 C 0.25 10.36 12.93 89.50 1.16 11.52 16 24 N -0.50 -22.49 18.50 19.94 0.37 -22.12 16 25 C -0.12 -3.32 9.98 22.35 0.22 -3.10 16 26 C -0.11 -2.66 9.98 22.35 0.22 -2.44 16 27 H 0.06 0.45 8.14 -2.38 -0.02 0.44 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.87 7.67 -2.38 -0.02 0.85 16 33 H 0.07 0.86 7.65 -2.39 -0.02 0.84 16 34 H 0.15 2.40 6.29 -2.91 -0.02 2.38 16 35 H 0.15 3.05 6.29 -2.91 -0.02 3.03 16 36 H 0.12 3.04 6.93 -2.39 -0.02 3.02 16 37 H 0.09 2.76 7.03 -2.39 -0.02 2.75 16 38 H 0.28 12.79 8.31 -92.71 -0.77 12.02 16 39 H 0.13 4.72 6.46 -2.39 -0.02 4.70 16 40 H 0.14 3.28 6.68 -2.39 -0.02 3.26 16 41 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -71.17 360.85 6.68 -64.49 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 1.05 Total: 16.83 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 6.11 Total: 18.03 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -1.10 Total: -86.50 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -1.41 Total: -53.95 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.10 kcal Total: -71.17 6.68 -64.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126647478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.694 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds