Wall clock time and date at job start Tue Mar 31 2020 12:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21301 * 120.00011 * 2 1 4 4 C 1.46861 * 120.00349 * 179.97438 * 2 1 3 5 5 C 1.40054 * 120.09729 * 180.02562 * 4 2 1 6 6 C 1.36606 * 119.90224 * 180.02562 * 5 4 2 7 7 C 1.39257 * 120.09476 * 359.97438 * 6 5 4 8 8 N 1.39155 * 119.90099 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99999 * 35.85019 * 8 7 6 10 10 O 1.21360 * 119.99954 * 355.68821 * 9 8 7 11 11 C 1.49367 * 120.00318 * 175.69368 * 9 8 7 12 12 O 1.21361 * 119.99877 * 6.15975 * 11 9 8 13 13 N 1.34771 * 120.00223 * 186.16320 * 11 9 8 14 14 C 1.46500 * 120.00262 * 5.14678 * 13 11 9 15 15 C 1.46503 * 120.00122 * 185.14735 * 13 11 9 16 16 H 1.09005 * 109.46936 * 0.02562 * 15 13 11 17 17 C 1.52997 * 109.47175 * 119.99928 * 15 13 11 18 18 C 1.50698 * 109.47154 * 239.99775 * 15 13 11 19 19 H 1.07994 * 119.99997 * 0.02562 * 18 15 13 20 20 C 1.37880 * 120.00021 * 179.97438 * 18 15 13 21 21 N 1.31517 * 119.99610 * 0.02562 * 20 18 15 22 22 Si 1.86793 * 120.00069 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47241 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.47223 * 300.00253 * 22 20 18 25 25 H 1.48503 * 109.47210 * 59.99980 * 22 20 18 26 26 C 1.39261 * 120.19313 * 0.27879 * 7 6 5 27 27 C 1.36599 * 120.09243 * 359.44408 * 26 7 6 28 28 H 1.08994 * 109.47081 * 240.00012 * 1 2 3 29 29 H 1.08996 * 109.47130 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46930 * 119.99968 * 1 2 3 31 31 H 1.07998 * 120.04536 * 359.97438 * 5 4 2 32 32 H 1.07997 * 119.95153 * 179.97438 * 6 5 4 33 33 H 0.97002 * 119.99786 * 215.84028 * 8 7 6 34 34 H 1.09007 * 109.46973 * 275.83970 * 14 13 11 35 35 H 1.09004 * 109.46761 * 35.83304 * 14 13 11 36 36 H 1.08996 * 109.47213 * 155.83398 * 14 13 11 37 37 H 1.08997 * 109.47420 * 180.02562 * 17 15 13 38 38 H 1.09004 * 109.47366 * 300.00351 * 17 15 13 39 39 H 1.08999 * 109.47252 * 59.99970 * 17 15 13 40 40 H 0.97004 * 119.99534 * 179.97438 * 21 20 18 41 41 H 1.08001 * 119.94893 * 179.70324 * 26 7 6 42 42 H 1.08002 * 120.04694 * 180.27439 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2414 -1.2718 0.0006 5 6 3.6419 -1.2741 0.0011 6 6 4.3210 -2.4594 0.0011 7 6 3.6227 -3.6642 0.0011 8 7 4.3185 -4.8693 0.0006 9 6 5.4750 -4.9800 0.6837 10 8 5.9499 -4.0083 1.2343 11 6 6.1724 -6.2985 0.7629 12 8 5.7597 -7.2427 0.1219 13 7 7.2599 -6.4396 1.5464 14 6 7.6918 -5.3347 2.4060 15 6 8.0103 -7.6978 1.5383 16 1 7.5430 -8.3951 0.8429 17 6 9.4512 -7.4295 1.0995 18 6 8.0093 -8.2921 2.9231 19 1 7.5003 -7.7837 3.7286 20 6 8.6574 -9.4856 3.1616 21 7 9.2768 -10.1049 2.1806 22 14 8.6556 -10.2226 4.8780 23 1 9.4163 -11.4979 4.8699 24 1 9.2927 -9.2728 5.8253 25 1 7.2568 -10.4827 5.3036 26 6 2.2301 -3.6666 -0.0047 27 6 1.5431 -2.4859 0.0009 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 4.1842 -0.3401 0.0007 32 1 5.4010 -2.4621 0.0011 33 1 3.9710 -5.6297 -0.4914 34 1 8.3094 -4.6458 1.8296 35 1 6.8171 -4.8071 2.7865 36 1 8.2702 -5.7291 3.2415 37 1 10.0094 -8.3657 1.0931 38 1 9.4520 -6.9996 0.0979 39 1 9.9188 -6.7321 1.7945 40 1 9.7330 -10.9443 2.3485 41 1 1.6925 -4.6033 -0.0096 42 1 0.4631 -2.4886 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132202215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:47 Heat of formation + Delta-G solvation = -64.501491 kcal Electronic energy + Delta-G solvation = -25840.907306 eV Core-core repulsion = 21979.931586 eV Total energy + Delta-G solvation = -3860.975720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.11861 -40.01920 -38.83557 -37.77158 -35.96004 -34.80575 -32.84672 -31.93159 -31.01822 -29.65309 -29.10659 -26.40309 -25.40968 -25.15193 -23.27776 -22.91656 -20.98226 -20.11523 -19.37992 -18.03538 -17.31782 -16.95985 -16.49900 -16.10975 -15.91992 -15.54293 -15.25815 -15.10802 -14.63127 -14.48078 -14.30008 -13.95319 -13.60255 -13.29323 -13.12852 -12.96793 -12.60615 -12.56511 -12.45263 -12.43319 -11.85394 -11.70291 -11.43967 -11.14987 -10.94892 -10.92129 -10.84282 -10.50986 -10.36220 -10.25516 -10.04045 -9.37911 -9.31170 -8.95010 -8.52595 -8.45491 -7.84369 -6.17264 -4.25950 0.29545 1.15797 1.63207 2.18098 2.53543 3.23645 3.28705 3.30682 3.45407 3.63159 3.80287 3.88877 4.31711 4.45161 4.60547 4.67726 4.76277 4.98526 5.02360 5.03312 5.14548 5.22271 5.27150 5.55854 5.71388 5.85060 5.93638 6.00179 6.09277 6.14530 6.20598 6.47955 6.59401 6.66103 6.69180 6.88297 6.96405 7.16219 7.26034 7.30588 7.59019 7.70926 7.88524 8.02136 8.25341 8.48988 8.78232 9.40327 10.88185 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029161 B = 0.002445 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.959833 B =11450.933310 C =11515.351300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.397 3.603 3 O -0.464 6.464 4 C -0.199 4.199 5 C -0.038 4.038 6 C -0.137 4.137 7 C 0.188 3.812 8 N -0.654 5.654 9 C 0.508 3.492 10 O -0.493 6.493 11 C 0.493 3.507 12 O -0.534 6.534 13 N -0.550 5.550 14 C 0.081 3.919 15 C 0.255 3.745 16 H 0.067 0.933 17 C -0.147 4.147 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.902 3.098 23 H -0.285 1.285 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.159 4.159 27 C -0.050 4.050 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.146 0.854 33 H 0.425 0.575 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.013 0.987 39 H 0.034 0.966 40 H 0.266 0.734 41 H 0.135 0.865 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.831 14.437 -5.014 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.276 3.724 3 O -0.340 6.340 4 C -0.201 4.201 5 C -0.057 4.057 6 C -0.157 4.157 7 C 0.091 3.909 8 N -0.300 5.300 9 C 0.292 3.708 10 O -0.366 6.366 11 C 0.274 3.726 12 O -0.413 6.413 13 N -0.280 5.280 14 C -0.062 4.062 15 C 0.156 3.844 16 H 0.085 0.915 17 C -0.206 4.206 18 C -0.569 4.569 19 H 0.080 0.920 20 C -0.136 4.136 21 N -0.524 5.524 22 Si 0.730 3.270 23 H -0.211 1.211 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.180 4.180 27 C -0.069 4.069 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.154 0.846 32 H 0.164 0.836 33 H 0.264 0.736 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.032 0.968 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.153 0.847 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.159 14.919 -4.938 21.153 hybrid contribution -0.141 -0.936 0.753 1.209 sum -14.300 13.983 -4.185 20.434 Atomic orbital electron populations 1.22248 0.93893 1.05062 1.04521 1.22399 0.91598 0.87615 0.70810 1.90551 1.72221 1.34380 1.36880 1.20478 0.94609 0.94722 1.10307 1.21074 0.92958 0.98485 0.93153 1.21100 1.01888 0.90501 1.02248 1.18121 0.91101 0.85820 0.95812 1.43264 1.23161 1.13516 1.50081 1.21054 0.80812 0.90830 0.78079 1.90716 1.63698 1.39421 1.42810 1.19547 0.82975 0.87133 0.82987 1.90733 1.64987 1.39893 1.45663 1.48290 1.24971 1.17378 1.37389 1.21957 1.00950 0.88408 0.94897 1.19192 0.88083 0.78658 0.98483 0.91545 1.22107 0.99245 1.02878 0.96333 1.21218 1.34699 1.06736 0.94199 0.92030 1.24886 0.94821 0.96442 0.97492 1.69862 1.34151 1.17008 1.31377 0.86492 0.78265 0.78420 0.83867 1.21086 1.20110 1.20170 1.20714 0.91999 0.99443 1.05804 1.20947 0.99970 0.90807 0.95163 0.88814 0.89827 0.88844 0.84618 0.83590 0.73594 0.93054 0.90850 0.90212 0.88422 0.96817 0.94733 0.92447 0.84673 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.06 8.92 36.01 0.32 -0.74 16 2 C 0.40 3.75 7.22 -30.82 -0.22 3.53 16 3 O -0.46 -6.06 17.07 5.54 0.09 -5.96 16 4 C -0.20 -1.94 5.87 -105.05 -0.62 -2.56 16 5 C -0.04 -0.43 9.55 -39.49 -0.38 -0.80 16 6 C -0.14 -1.69 8.61 -39.79 -0.34 -2.03 16 7 C 0.19 2.19 6.28 -83.78 -0.53 1.66 16 8 N -0.65 -8.43 5.29 -10.27 -0.05 -8.49 16 9 C 0.51 8.25 7.53 -11.63 -0.09 8.16 16 10 O -0.49 -8.28 10.84 5.49 0.06 -8.22 16 11 C 0.49 9.80 7.72 -11.63 -0.09 9.71 16 12 O -0.53 -11.74 15.83 5.49 0.09 -11.65 16 13 N -0.55 -11.65 2.75 -175.80 -0.48 -12.14 16 14 C 0.08 1.47 8.16 59.85 0.49 1.96 16 15 C 0.26 6.29 2.62 -69.08 -0.18 6.11 16 16 H 0.07 1.86 6.91 -51.93 -0.36 1.50 16 17 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 18 C -0.53 -13.89 7.95 -34.44 -0.27 -14.17 16 19 H 0.06 1.59 7.43 -52.49 -0.39 1.20 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -24.22 11.32 55.43 0.63 -23.59 16 22 Si 0.90 20.52 29.54 -169.99 -5.02 15.49 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.16 -1.43 9.90 -39.79 -0.39 -1.82 16 27 C -0.05 -0.39 9.42 -39.49 -0.37 -0.76 16 28 H 0.09 0.34 8.08 -51.93 -0.42 -0.07 16 29 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.09 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.14 1.49 7.64 -52.49 -0.40 1.09 16 32 H 0.15 1.96 6.27 -52.49 -0.33 1.63 16 33 H 0.43 4.83 8.30 -40.82 -0.34 4.49 16 34 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.07 1.27 5.99 -51.93 -0.31 0.96 16 36 H 0.08 1.49 7.11 -51.93 -0.37 1.12 16 37 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.14 0.59 7.03 -52.49 -0.37 0.22 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -31.08 355.30 -7.01 -38.09 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.24 Total: 4.27 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -2.43 Total: 6.85 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.09 Total: -44.21 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: 0.24 Total: -25.84 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.08 -7.01 -38.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132202215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.412 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds