Wall clock time and date at job start Tue Mar 31 2020 12:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21301 * 120.00011 * 2 1 4 4 C 1.46861 * 120.00349 * 179.97438 * 2 1 3 5 5 C 1.40054 * 120.09729 * 180.02562 * 4 2 1 6 6 C 1.36606 * 119.90224 * 180.02562 * 5 4 2 7 7 C 1.39257 * 120.09476 * 359.97438 * 6 5 4 8 8 N 1.39155 * 119.90099 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99999 * 35.85019 * 8 7 6 10 10 O 1.21360 * 119.99954 * 355.68821 * 9 8 7 11 11 C 1.49367 * 120.00318 * 175.69368 * 9 8 7 12 12 O 1.21361 * 119.99877 * 6.15975 * 11 9 8 13 13 N 1.34771 * 120.00223 * 186.16320 * 11 9 8 14 14 C 1.46500 * 120.00262 * 5.14678 * 13 11 9 15 15 C 1.46503 * 120.00122 * 185.14735 * 13 11 9 16 16 H 1.09005 * 109.46936 * 0.02562 * 15 13 11 17 17 C 1.52997 * 109.47175 * 119.99928 * 15 13 11 18 18 C 1.50698 * 109.47154 * 239.99775 * 15 13 11 19 19 H 1.07994 * 119.99997 * 0.02562 * 18 15 13 20 20 C 1.37880 * 120.00021 * 179.97438 * 18 15 13 21 21 N 1.31517 * 119.99610 * 0.02562 * 20 18 15 22 22 Si 1.86793 * 120.00069 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47241 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.47223 * 300.00253 * 22 20 18 25 25 H 1.48503 * 109.47210 * 59.99980 * 22 20 18 26 26 C 1.39261 * 120.19313 * 0.27879 * 7 6 5 27 27 C 1.36599 * 120.09243 * 359.44408 * 26 7 6 28 28 H 1.08994 * 109.47081 * 240.00012 * 1 2 3 29 29 H 1.08996 * 109.47130 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46930 * 119.99968 * 1 2 3 31 31 H 1.07998 * 120.04536 * 359.97438 * 5 4 2 32 32 H 1.07997 * 119.95153 * 179.97438 * 6 5 4 33 33 H 0.97002 * 119.99786 * 215.84028 * 8 7 6 34 34 H 1.09007 * 109.46973 * 275.83970 * 14 13 11 35 35 H 1.09004 * 109.46761 * 35.83304 * 14 13 11 36 36 H 1.08996 * 109.47213 * 155.83398 * 14 13 11 37 37 H 1.08997 * 109.47420 * 180.02562 * 17 15 13 38 38 H 1.09004 * 109.47366 * 300.00351 * 17 15 13 39 39 H 1.08999 * 109.47252 * 59.99970 * 17 15 13 40 40 H 0.97004 * 119.99534 * 179.97438 * 21 20 18 41 41 H 1.08001 * 119.94893 * 179.70324 * 26 7 6 42 42 H 1.08002 * 120.04694 * 180.27439 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2414 -1.2718 0.0006 5 6 3.6419 -1.2741 0.0011 6 6 4.3210 -2.4594 0.0011 7 6 3.6227 -3.6642 0.0011 8 7 4.3185 -4.8693 0.0006 9 6 5.4750 -4.9800 0.6837 10 8 5.9499 -4.0083 1.2343 11 6 6.1724 -6.2985 0.7629 12 8 5.7597 -7.2427 0.1219 13 7 7.2599 -6.4396 1.5464 14 6 7.6918 -5.3347 2.4060 15 6 8.0103 -7.6978 1.5383 16 1 7.5430 -8.3951 0.8429 17 6 9.4512 -7.4295 1.0995 18 6 8.0093 -8.2921 2.9231 19 1 7.5003 -7.7837 3.7286 20 6 8.6574 -9.4856 3.1616 21 7 9.2768 -10.1049 2.1806 22 14 8.6556 -10.2226 4.8780 23 1 9.4163 -11.4979 4.8699 24 1 9.2927 -9.2728 5.8253 25 1 7.2568 -10.4827 5.3036 26 6 2.2301 -3.6666 -0.0047 27 6 1.5431 -2.4859 0.0009 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 4.1842 -0.3401 0.0007 32 1 5.4010 -2.4621 0.0011 33 1 3.9710 -5.6297 -0.4914 34 1 8.3094 -4.6458 1.8296 35 1 6.8171 -4.8071 2.7865 36 1 8.2702 -5.7291 3.2415 37 1 10.0094 -8.3657 1.0931 38 1 9.4520 -6.9996 0.0979 39 1 9.9188 -6.7321 1.7945 40 1 9.7330 -10.9443 2.3485 41 1 1.6925 -4.6033 -0.0096 42 1 0.4631 -2.4886 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132202215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:46 Heat of formation + Delta-G solvation = -84.141192 kcal Electronic energy + Delta-G solvation = -25841.758948 eV Core-core repulsion = 21979.931586 eV Total energy + Delta-G solvation = -3861.827361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.31435 -41.00052 -40.05876 -38.90810 -37.57055 -36.03369 -34.72289 -32.68325 -31.81111 -31.48793 -29.84543 -27.90535 -27.35035 -26.49319 -24.38418 -23.77381 -22.42329 -20.95582 -20.79936 -19.20191 -18.69369 -18.34097 -17.97338 -17.43899 -17.18028 -16.88872 -16.45253 -16.10108 -15.95186 -15.58263 -15.25648 -15.06442 -14.84667 -14.51848 -14.42053 -14.05032 -13.95170 -13.79965 -13.57497 -13.30219 -13.02677 -12.96589 -12.95561 -12.77541 -12.73899 -12.42714 -12.28173 -12.23373 -12.11714 -11.53114 -11.25442 -10.82294 -10.58529 -10.41710 -10.10123 -9.60341 -9.33894 -8.17987 -6.34310 -0.56265 0.32087 0.39169 1.19518 1.41548 1.44232 1.44970 1.52839 2.06793 2.37497 2.54953 2.77533 3.10744 3.15673 3.21686 3.75565 3.88921 4.18362 4.25221 4.34582 4.37093 4.45395 4.66895 4.67729 4.69948 4.74732 4.84939 4.89874 4.96633 4.99660 5.06556 5.14147 5.21755 5.25771 5.35526 5.37944 5.44676 5.59846 5.78498 5.85851 5.96528 6.08195 6.42533 6.56961 6.60346 6.71262 6.93657 7.36144 8.86547 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029161 B = 0.002445 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.959833 B =11450.933310 C =11515.351300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.396 3.604 3 O -0.511 6.511 4 C -0.203 4.203 5 C -0.054 4.054 6 C -0.151 4.151 7 C 0.164 3.836 8 N -0.637 5.637 9 C 0.518 3.482 10 O -0.502 6.502 11 C 0.488 3.512 12 O -0.561 6.561 13 N -0.562 5.562 14 C 0.087 3.913 15 C 0.259 3.741 16 H 0.025 0.975 17 C -0.135 4.135 18 C -0.543 4.543 19 H 0.061 0.939 20 C 0.020 3.980 21 N -0.913 5.913 22 Si 0.965 3.035 23 H -0.282 1.282 24 H -0.266 1.266 25 H -0.276 1.276 26 C -0.148 4.148 27 C -0.032 4.032 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.433 0.567 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.024 0.976 39 H 0.045 0.955 40 H 0.267 0.733 41 H 0.165 0.835 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.693 15.070 -4.371 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.278 3.722 3 O -0.390 6.390 4 C -0.204 4.204 5 C -0.073 4.073 6 C -0.171 4.171 7 C 0.069 3.931 8 N -0.284 5.284 9 C 0.301 3.699 10 O -0.376 6.376 11 C 0.270 3.730 12 O -0.442 6.442 13 N -0.292 5.292 14 C -0.055 4.055 15 C 0.159 3.841 16 H 0.043 0.957 17 C -0.193 4.193 18 C -0.582 4.582 19 H 0.079 0.921 20 C -0.180 4.180 21 N -0.551 5.551 22 Si 0.790 3.210 23 H -0.207 1.207 24 H -0.191 1.191 25 H -0.201 1.201 26 C -0.168 4.168 27 C -0.050 4.050 28 H 0.137 0.863 29 H 0.100 0.900 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.273 0.727 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.182 0.818 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.060 15.581 -4.309 23.502 hybrid contribution 0.645 -1.071 0.472 1.337 sum -16.414 14.510 -3.836 22.241 Atomic orbital electron populations 1.22298 0.89946 1.05917 1.06906 1.23065 0.93647 0.86538 0.68934 1.90547 1.73522 1.35765 1.39201 1.20767 0.93973 0.96197 1.09492 1.21082 0.94237 0.97767 0.94239 1.20962 1.01156 0.91415 1.03546 1.18321 0.92316 0.84603 0.97849 1.43039 1.21905 1.14426 1.49010 1.20185 0.81785 0.88886 0.79050 1.90719 1.64251 1.38899 1.43758 1.20156 0.82501 0.88419 0.81932 1.90705 1.65626 1.41388 1.46446 1.48240 1.25457 1.17015 1.38475 1.22011 1.01486 0.87561 0.94407 1.18827 0.88735 0.79655 0.96925 0.95686 1.21913 0.98181 1.01993 0.97224 1.21460 1.34729 1.07208 0.94778 0.92116 1.25680 0.94449 0.96817 1.01082 1.69989 1.34667 1.17281 1.33174 0.85505 0.78163 0.77760 0.79584 1.20741 1.19052 1.20098 1.21072 0.90564 1.01280 1.03892 1.21408 1.02087 0.89055 0.92476 0.86287 0.90010 0.86047 0.85589 0.85575 0.72708 0.91779 0.89818 0.90817 0.90644 0.95739 0.93586 0.92395 0.81793 0.79961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.24 8.92 71.24 0.64 -0.61 16 2 C 0.40 6.66 7.22 27.94 0.20 6.86 16 3 O -0.51 -13.21 17.07 -3.10 -0.05 -13.27 16 4 C -0.20 -3.50 5.87 -20.14 -0.12 -3.61 16 5 C -0.05 -1.22 9.55 22.33 0.21 -1.01 16 6 C -0.15 -3.70 8.61 22.13 0.19 -3.51 16 7 C 0.16 3.59 6.28 38.47 0.24 3.83 16 8 N -0.64 -15.86 5.29 -304.78 -1.61 -17.47 16 9 C 0.52 16.75 7.53 87.24 0.66 17.40 16 10 O -0.50 -16.82 10.84 -3.28 -0.04 -16.86 16 11 C 0.49 19.70 7.72 87.24 0.67 20.38 16 12 O -0.56 -25.32 15.83 -3.28 -0.05 -25.38 16 13 N -0.56 -24.17 2.75 -828.47 -2.28 -26.45 16 14 C 0.09 3.16 8.16 127.77 1.04 4.21 16 15 C 0.26 13.14 2.62 44.24 0.12 13.26 16 16 H 0.03 1.47 6.91 -2.38 -0.02 1.46 16 17 C -0.13 -6.36 8.97 71.98 0.65 -5.71 16 18 C -0.54 -28.87 7.95 25.60 0.20 -28.66 16 19 H 0.06 3.16 7.43 -2.91 -0.02 3.14 16 20 C 0.02 1.07 5.30 84.65 0.45 1.52 16 21 N -0.91 -50.79 11.32 21.45 0.24 -50.55 16 22 Si 0.96 42.02 29.54 68.60 2.03 44.04 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 C -0.15 -2.11 9.90 22.13 0.22 -1.89 16 27 C -0.03 -0.36 9.42 22.33 0.21 -0.15 16 28 H 0.12 0.23 8.08 -2.39 -0.02 0.21 16 29 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.12 0.16 8.08 -2.39 -0.02 0.14 16 31 H 0.13 2.96 7.64 -2.91 -0.02 2.94 16 32 H 0.13 3.54 6.27 -2.91 -0.02 3.52 16 33 H 0.43 9.36 8.30 -92.71 -0.77 8.59 16 34 H 0.06 2.14 8.09 -2.38 -0.02 2.12 16 35 H 0.08 2.86 5.99 -2.39 -0.01 2.84 16 36 H 0.07 2.73 7.11 -2.39 -0.02 2.72 16 37 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 38 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.05 2.01 7.67 -2.39 -0.02 1.99 16 40 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.18 0.34 7.03 -2.91 -0.02 0.32 16 Total: -1.00 -70.40 355.30 4.11 -66.28 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.30 Total: 17.35 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 5.58 Total: 22.30 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -3.65 Total: -94.47 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -0.14 Total: -55.50 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -70.40 4.11 -66.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132202215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.860 kcal (2) G-P(sol) polarization free energy of solvation -70.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds