Wall clock time and date at job start Tue Mar 31 2020 12:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46892 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99737 * 2 1 3 5 5 H 1.08002 * 119.99958 * 120.00227 * 4 2 1 6 6 C 1.37875 * 119.99957 * 300.00523 * 4 2 1 7 7 N 1.31520 * 120.00396 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00114 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47281 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46874 * 300.00077 * 8 6 4 11 11 H 1.48504 * 109.46721 * 59.99605 * 8 6 4 12 12 N 1.46499 * 109.47379 * 239.99916 * 2 1 3 13 13 C 1.46499 * 119.99847 * 300.00229 * 12 2 1 14 14 C 1.34774 * 119.99844 * 119.99591 * 12 2 1 15 15 O 1.21362 * 120.00613 * 356.43857 * 14 12 2 16 16 C 1.49358 * 119.99889 * 176.42717 * 14 12 2 17 17 O 1.21381 * 119.99934 * 5.93208 * 16 14 12 18 18 N 1.34776 * 119.99931 * 185.92573 * 16 14 12 19 19 C 1.39725 * 119.99734 * 175.31995 * 18 16 14 20 20 C 1.38958 * 120.05907 * 214.82923 * 19 18 16 21 21 C 1.38146 * 119.96187 * 179.72197 * 20 19 18 22 22 C 1.38051 * 120.02069 * 0.55583 * 21 20 19 23 23 C 1.38671 * 120.16093 * 359.71753 * 22 21 20 24 24 C 1.37841 * 120.11386 * 359.97438 * 23 22 21 25 25 C 1.51100 * 107.26709 * 180.02562 * 23 22 21 26 26 O 1.43940 * 105.95471 * 17.70024 * 25 23 22 27 27 C 1.43932 * 104.95998 * 331.52333 * 26 25 23 28 28 H 1.09004 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47260 * 299.99846 * 1 2 3 30 30 H 1.09001 * 109.46861 * 60.00559 * 1 2 3 31 31 H 0.96995 * 120.00269 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.47235 * 95.97718 * 13 12 2 33 33 H 1.09001 * 109.46910 * 215.97868 * 13 12 2 34 34 H 1.08994 * 109.47132 * 335.97280 * 13 12 2 35 35 H 0.97001 * 120.00165 * 355.31839 * 18 16 14 36 36 H 1.07995 * 120.01540 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.98702 * 180.25121 * 21 20 19 38 38 H 1.08001 * 120.06902 * 180.02562 * 24 23 22 39 39 H 1.09001 * 110.15697 * 136.82763 * 25 23 22 40 40 H 1.08998 * 110.14992 * 258.58042 * 25 23 22 41 41 H 1.08999 * 110.15447 * 147.60279 * 27 26 25 42 42 H 1.09001 * 110.15440 * 269.29092 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 1.8267 -0.4198 5.2205 10 1 1.8257 -2.5201 4.0078 11 1 3.8063 -1.1207 4.0082 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0332 1.1435 -1.9251 16 6 3.3568 -0.7608 -3.2610 17 8 3.0314 -1.9097 -3.4789 18 7 4.2266 -0.1396 -4.0819 19 6 4.8288 -0.8466 -5.1259 20 6 6.1364 -0.5592 -5.4979 21 6 6.7317 -1.2634 -6.5265 22 6 6.0241 -2.2442 -7.1922 23 6 4.7171 -2.5295 -6.8272 24 6 4.1192 -1.8350 -5.7975 25 6 4.2295 -3.6354 -7.7341 26 8 5.4101 -4.2274 -8.3062 27 6 6.3815 -3.1657 -8.3353 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.7093 1.1619 3.4843 32 1 0.7984 -2.1451 -2.0876 33 1 2.5058 -2.6083 -1.8916 34 1 1.4261 -2.5697 -0.4771 35 1 4.4346 0.7984 -3.9480 36 1 6.6883 0.2115 -4.9804 37 1 7.7495 -1.0431 -6.8133 38 1 3.1014 -2.0582 -5.5136 39 1 3.6783 -4.3784 -7.1576 40 1 3.5966 -3.2243 -8.5206 41 1 7.3838 -3.5696 -8.1928 42 1 6.3240 -2.6300 -9.2829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132316023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:23 Heat of formation + Delta-G solvation = -56.864722 kcal Electronic energy + Delta-G solvation = -26231.747741 eV Core-core repulsion = 22371.103176 eV Total energy + Delta-G solvation = -3860.644565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.23987 -40.35586 -38.57081 -37.36994 -35.85240 -34.57053 -32.81867 -31.76508 -30.60017 -29.57285 -27.97367 -26.39162 -25.51047 -25.28678 -24.04220 -22.16144 -21.71110 -20.70771 -19.36704 -17.74187 -17.26827 -16.76175 -16.56706 -16.41580 -16.16888 -15.78642 -15.60165 -15.05731 -14.69812 -14.43734 -14.25063 -13.77786 -13.64741 -13.26925 -13.10621 -12.87589 -12.63029 -12.56480 -12.39663 -12.03163 -11.82907 -11.67621 -11.20852 -11.13301 -10.92302 -10.88364 -10.82412 -10.61784 -10.34560 -10.24602 -9.99069 -9.29550 -9.09055 -8.83852 -8.50934 -8.27627 -7.80144 -6.16316 -4.25226 0.82250 1.09447 1.80408 2.56195 3.24390 3.29305 3.31238 3.35907 3.63259 3.65999 3.83908 4.07762 4.32108 4.37439 4.69802 4.72214 4.96235 4.99977 5.06646 5.13618 5.15386 5.27234 5.42036 5.46085 5.66082 5.87669 5.99982 6.02641 6.09215 6.13476 6.18949 6.42812 6.55667 6.62604 6.69931 6.75537 6.91326 7.02750 7.20296 7.33718 7.60435 7.77779 7.91872 8.03674 8.28233 8.52006 8.79797 9.41228 10.89092 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025018 B = 0.002685 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.945047 B =10424.039261 C =10528.892002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.255 3.745 3 H 0.067 0.933 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.276 1.276 12 N -0.549 5.549 13 C 0.068 3.932 14 C 0.493 3.507 15 O -0.537 6.537 16 C 0.510 3.490 17 O -0.498 6.498 18 N -0.652 5.652 19 C 0.157 3.843 20 C -0.138 4.138 21 C -0.073 4.073 22 C -0.153 4.153 23 C -0.114 4.114 24 C -0.095 4.095 25 C 0.092 3.908 26 O -0.362 6.362 27 C 0.094 3.906 28 H 0.033 0.967 29 H 0.097 0.903 30 H 0.013 0.987 31 H 0.266 0.734 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.424 0.576 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.145 0.855 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.078 -4.679 -19.419 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.084 0.916 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.279 5.279 13 C -0.075 4.075 14 C 0.274 3.726 15 O -0.416 6.416 16 C 0.294 3.706 17 O -0.372 6.372 18 N -0.299 5.299 19 C 0.062 3.938 20 C -0.158 4.158 21 C -0.092 4.092 22 C -0.154 4.154 23 C -0.115 4.115 24 C -0.115 4.115 25 C 0.016 3.984 26 O -0.281 6.281 27 C 0.018 3.982 28 H 0.052 0.948 29 H 0.115 0.885 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.263 0.737 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.163 0.837 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.826 -4.983 -19.292 21.407 hybrid contribution 0.367 0.230 1.105 1.186 sum 8.193 -4.754 -18.187 20.506 Atomic orbital electron populations 1.22093 0.97489 0.99842 1.01079 1.19184 0.91427 0.94560 0.79270 0.91563 1.21244 1.32412 1.13318 0.90013 0.92012 1.24883 0.94772 0.94937 0.98998 1.69862 1.35995 1.22433 1.24119 0.86498 0.79268 0.79630 0.81690 1.21077 1.20084 1.20158 1.48285 1.45064 1.12687 1.21860 1.22191 1.01391 0.81854 1.02069 1.19543 0.81989 0.87216 0.83859 1.90726 1.60395 1.15035 1.75419 1.21031 0.79016 0.86652 0.83943 1.90647 1.57586 1.17210 1.71764 1.43270 1.43509 1.15091 1.28003 1.17664 0.91850 0.95064 0.89183 1.20934 0.92795 1.02453 0.99665 1.20116 0.99519 0.94648 0.94906 1.21032 0.95867 0.99402 0.99141 1.20859 0.95274 0.98570 0.96776 1.20488 1.01257 0.96249 0.93550 1.21748 0.88446 0.93693 0.94533 1.89079 1.22943 1.32743 1.83321 1.21695 0.93860 0.87224 0.95405 0.94796 0.88477 0.96792 0.92446 0.93399 0.89293 0.90356 0.73726 0.84730 0.85218 0.83737 0.88171 0.90367 0.88656 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.97 37.16 0.33 -3.11 16 2 C 0.25 6.37 2.63 -69.08 -0.18 6.19 16 3 H 0.07 1.87 6.91 -51.93 -0.36 1.52 16 4 C -0.53 -14.08 7.95 -34.44 -0.27 -14.36 16 5 H 0.06 1.62 7.44 -52.49 -0.39 1.23 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.42 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.55 -11.82 2.75 -175.81 -0.48 -12.30 16 13 C 0.07 1.26 8.49 59.85 0.51 1.76 16 14 C 0.49 10.02 7.73 -11.63 -0.09 9.93 16 15 O -0.54 -12.00 15.82 5.49 0.09 -11.91 16 16 C 0.51 8.53 7.62 -11.63 -0.09 8.44 16 17 O -0.50 -8.54 10.57 5.47 0.06 -8.49 16 18 N -0.65 -8.87 5.32 -10.27 -0.05 -8.92 16 19 C 0.16 1.97 6.30 -83.72 -0.53 1.44 16 20 C -0.14 -1.41 9.97 -39.35 -0.39 -1.80 16 21 C -0.07 -0.67 10.03 -39.68 -0.40 -1.07 16 22 C -0.15 -1.55 6.33 -104.33 -0.66 -2.21 16 23 C -0.11 -1.29 6.32 -104.41 -0.66 -1.95 16 24 C -0.10 -1.22 8.69 -39.45 -0.34 -1.56 16 25 C 0.09 0.90 7.63 36.20 0.28 1.17 16 26 O -0.36 -3.91 11.72 -35.23 -0.41 -4.32 16 27 C 0.09 0.80 7.63 36.21 0.28 1.08 16 28 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 29 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.59 5.36 -51.93 -0.28 1.31 16 34 H 0.08 1.49 7.12 -51.93 -0.37 1.12 16 35 H 0.42 5.14 8.30 -40.82 -0.34 4.80 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.14 1.97 6.22 -52.49 -0.33 1.65 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -30.35 348.29 -7.56 -37.91 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.29 Total: 5.28 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -2.31 Total: 5.65 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.09 Total: -45.02 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.27 Total: -24.72 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.35 -7.56 -37.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132316023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.956 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds