Wall clock time and date at job start Tue Mar 31 2020 12:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46892 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99737 * 2 1 3 5 5 H 1.08002 * 119.99958 * 120.00227 * 4 2 1 6 6 C 1.37875 * 119.99957 * 300.00523 * 4 2 1 7 7 N 1.31520 * 120.00396 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00114 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47281 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46874 * 300.00077 * 8 6 4 11 11 H 1.48504 * 109.46721 * 59.99605 * 8 6 4 12 12 N 1.46499 * 109.47379 * 239.99916 * 2 1 3 13 13 C 1.46499 * 119.99847 * 300.00229 * 12 2 1 14 14 C 1.34774 * 119.99844 * 119.99591 * 12 2 1 15 15 O 1.21362 * 120.00613 * 356.43857 * 14 12 2 16 16 C 1.49358 * 119.99889 * 176.42717 * 14 12 2 17 17 O 1.21381 * 119.99934 * 5.93208 * 16 14 12 18 18 N 1.34776 * 119.99931 * 185.92573 * 16 14 12 19 19 C 1.39725 * 119.99734 * 175.31995 * 18 16 14 20 20 C 1.38958 * 120.05907 * 214.82923 * 19 18 16 21 21 C 1.38146 * 119.96187 * 179.72197 * 20 19 18 22 22 C 1.38051 * 120.02069 * 0.55583 * 21 20 19 23 23 C 1.38671 * 120.16093 * 359.71753 * 22 21 20 24 24 C 1.37841 * 120.11386 * 359.97438 * 23 22 21 25 25 C 1.51100 * 107.26709 * 180.02562 * 23 22 21 26 26 O 1.43940 * 105.95471 * 17.70024 * 25 23 22 27 27 C 1.43932 * 104.95998 * 331.52333 * 26 25 23 28 28 H 1.09004 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47260 * 299.99846 * 1 2 3 30 30 H 1.09001 * 109.46861 * 60.00559 * 1 2 3 31 31 H 0.96995 * 120.00269 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.47235 * 95.97718 * 13 12 2 33 33 H 1.09001 * 109.46910 * 215.97868 * 13 12 2 34 34 H 1.08994 * 109.47132 * 335.97280 * 13 12 2 35 35 H 0.97001 * 120.00165 * 355.31839 * 18 16 14 36 36 H 1.07995 * 120.01540 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.98702 * 180.25121 * 21 20 19 38 38 H 1.08001 * 120.06902 * 180.02562 * 24 23 22 39 39 H 1.09001 * 110.15697 * 136.82763 * 25 23 22 40 40 H 1.08998 * 110.14992 * 258.58042 * 25 23 22 41 41 H 1.08999 * 110.15447 * 147.60279 * 27 26 25 42 42 H 1.09001 * 110.15440 * 269.29092 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 1.8267 -0.4198 5.2205 10 1 1.8257 -2.5201 4.0078 11 1 3.8063 -1.1207 4.0082 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0332 1.1435 -1.9251 16 6 3.3568 -0.7608 -3.2610 17 8 3.0314 -1.9097 -3.4789 18 7 4.2266 -0.1396 -4.0819 19 6 4.8288 -0.8466 -5.1259 20 6 6.1364 -0.5592 -5.4979 21 6 6.7317 -1.2634 -6.5265 22 6 6.0241 -2.2442 -7.1922 23 6 4.7171 -2.5295 -6.8272 24 6 4.1192 -1.8350 -5.7975 25 6 4.2295 -3.6354 -7.7341 26 8 5.4101 -4.2274 -8.3062 27 6 6.3815 -3.1657 -8.3353 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.7093 1.1619 3.4843 32 1 0.7984 -2.1451 -2.0876 33 1 2.5058 -2.6083 -1.8916 34 1 1.4261 -2.5697 -0.4771 35 1 4.4346 0.7984 -3.9480 36 1 6.6883 0.2115 -4.9804 37 1 7.7495 -1.0431 -6.8133 38 1 3.1014 -2.0582 -5.5136 39 1 3.6783 -4.3784 -7.1576 40 1 3.5966 -3.2243 -8.5206 41 1 7.3838 -3.5696 -8.1928 42 1 6.3240 -2.6300 -9.2829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132316023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:22 Heat of formation + Delta-G solvation = -76.509294 kcal Electronic energy + Delta-G solvation = -26232.599594 eV Core-core repulsion = 22371.103176 eV Total energy + Delta-G solvation = -3861.496418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.34553 -41.43115 -39.95864 -38.42737 -37.50281 -35.77755 -34.70457 -32.55964 -31.59914 -31.36161 -28.76700 -27.89871 -27.35616 -26.64376 -25.20598 -23.10586 -22.80181 -21.97678 -20.87461 -19.03868 -18.60924 -18.30588 -17.73010 -17.49541 -17.35809 -17.04375 -16.86698 -16.56800 -16.01664 -15.55198 -15.42217 -15.02306 -14.77282 -14.46858 -14.43689 -14.06608 -13.93654 -13.68899 -13.55656 -13.48261 -13.20261 -13.01849 -12.77866 -12.73988 -12.71356 -12.31615 -12.25051 -12.14086 -11.98391 -11.73864 -11.26334 -10.79981 -10.59109 -10.35488 -9.85805 -9.56148 -9.15357 -8.18992 -6.35765 -0.15999 0.26401 0.51220 1.23644 1.42948 1.44000 1.52093 2.05620 2.36733 2.54441 2.60933 2.96493 3.09420 3.13835 3.33719 3.62434 3.93892 4.20279 4.25202 4.41245 4.44559 4.45702 4.58061 4.59131 4.69062 4.69641 4.75576 4.84020 4.85527 4.96835 5.01348 5.09372 5.17247 5.28289 5.31775 5.37788 5.38218 5.59195 5.69167 5.82786 5.88152 5.98134 6.07297 6.44216 6.61340 6.71547 6.94268 7.35076 8.85608 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025018 B = 0.002685 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.945047 B =10424.039261 C =10528.892002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.259 3.741 3 H 0.024 0.976 4 C -0.546 4.546 5 H 0.060 0.940 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.965 3.035 9 H -0.281 1.281 10 H -0.265 1.265 11 H -0.276 1.276 12 N -0.560 5.560 13 C 0.074 3.926 14 C 0.488 3.512 15 O -0.564 6.564 16 C 0.519 3.481 17 O -0.504 6.504 18 N -0.636 5.636 19 C 0.130 3.870 20 C -0.132 4.132 21 C -0.069 4.069 22 C -0.152 4.152 23 C -0.129 4.129 24 C -0.110 4.110 25 C 0.091 3.909 26 O -0.381 6.381 27 C 0.092 3.908 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.023 0.977 31 H 0.267 0.733 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.430 0.570 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.877 -5.797 -20.813 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.042 0.958 4 C -0.584 4.584 5 H 0.079 0.921 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.790 3.210 9 H -0.206 1.206 10 H -0.190 1.190 11 H -0.201 1.201 12 N -0.290 5.290 13 C -0.068 4.068 14 C 0.270 3.730 15 O -0.445 6.445 16 C 0.301 3.699 17 O -0.380 6.380 18 N -0.283 5.283 19 C 0.036 3.964 20 C -0.152 4.152 21 C -0.087 4.087 22 C -0.153 4.153 23 C -0.130 4.130 24 C -0.131 4.131 25 C 0.015 3.985 26 O -0.300 6.300 27 C 0.016 3.984 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.270 0.730 36 H 0.174 0.826 37 H 0.183 0.817 38 H 0.146 0.854 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.644 -6.113 -20.732 23.668 hybrid contribution -0.114 0.607 1.402 1.532 sum 9.529 -5.506 -19.330 22.244 Atomic orbital electron populations 1.21901 0.96544 1.00347 1.00455 1.18820 0.92124 0.92656 0.80549 0.95780 1.21484 1.32601 1.13401 0.90950 0.92136 1.25676 0.94858 0.95563 1.01816 1.69988 1.36794 1.23557 1.24783 0.85508 0.78510 0.78911 0.78106 1.20648 1.18989 1.20120 1.48243 1.45643 1.13752 1.21353 1.22260 1.02388 0.80098 1.02037 1.20153 0.81239 0.87056 0.84601 1.90697 1.61082 1.16369 1.76340 1.20172 0.79944 0.86307 0.83433 1.90642 1.58250 1.17195 1.71872 1.43062 1.42358 1.15317 1.27515 1.17863 0.93062 0.95964 0.89490 1.21233 0.91738 1.02600 0.99630 1.20517 1.00881 0.93529 0.93773 1.21410 0.95267 0.99353 0.99244 1.21048 0.96188 0.99016 0.96763 1.20428 1.00880 0.97116 0.94632 1.21824 0.88490 0.93355 0.94797 1.89058 1.23608 1.33895 1.83409 1.21930 0.94164 0.86700 0.95616 0.93584 0.90681 0.95752 0.92354 0.91812 0.88422 0.91026 0.72996 0.82574 0.81707 0.85374 0.88141 0.88788 0.86795 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 8.97 71.98 0.65 -5.76 16 2 C 0.26 13.32 2.63 44.25 0.12 13.44 16 3 H 0.02 1.44 6.91 -2.38 -0.02 1.42 16 4 C -0.55 -29.36 7.95 25.60 0.20 -29.16 16 5 H 0.06 3.19 7.44 -2.91 -0.02 3.17 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -51.21 11.32 21.45 0.24 -50.97 16 8 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.56 -24.51 2.75 -828.50 -2.28 -26.79 16 13 C 0.07 2.72 8.49 127.77 1.08 3.80 16 14 C 0.49 20.19 7.73 87.24 0.67 20.87 16 15 O -0.56 -26.04 15.82 -3.29 -0.05 -26.10 16 16 C 0.52 17.38 7.62 87.24 0.66 18.04 16 17 O -0.50 -17.22 10.57 -3.34 -0.04 -17.25 16 18 N -0.64 -17.01 5.32 -304.77 -1.62 -18.64 16 19 C 0.13 3.10 6.30 38.23 0.24 3.34 16 20 C -0.13 -2.36 9.97 22.42 0.22 -2.13 16 21 C -0.07 -1.02 10.03 22.20 0.22 -0.80 16 22 C -0.15 -2.65 6.33 -19.67 -0.12 -2.78 16 23 C -0.13 -2.75 6.32 -19.73 -0.12 -2.88 16 24 C -0.11 -2.76 8.69 22.35 0.19 -2.57 16 25 C 0.09 1.66 7.63 71.36 0.54 2.20 16 26 O -0.38 -7.43 11.72 -148.98 -1.75 -9.17 16 27 C 0.09 1.27 7.63 71.37 0.54 1.82 16 28 H 0.05 2.03 7.67 -2.38 -0.02 2.01 16 29 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 30 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.10 3.44 5.36 -2.47 -0.01 3.42 16 34 H 0.07 2.70 7.12 -2.39 -0.02 2.69 16 35 H 0.43 10.25 8.30 -92.71 -0.77 9.48 16 36 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.13 3.56 6.22 -2.91 -0.02 3.54 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -66.32 348.29 2.39 -63.93 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.30 Total: 21.58 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 5.56 Total: 19.04 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -3.66 Total: -96.40 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -1.83 Total: -52.52 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -66.32 2.39 -63.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132316023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.583 kcal (2) G-P(sol) polarization free energy of solvation -66.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds