Wall clock time and date at job start Tue Mar 31 2020 13:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46842 * 2 1 4 4 O 1.42897 * 109.47395 * 240.00482 * 2 1 3 5 5 C 1.35900 * 117.00294 * 84.79811 * 4 2 1 6 6 C 1.38790 * 120.02580 * 354.62492 * 5 4 2 7 7 C 1.38151 * 120.05876 * 180.02562 * 6 5 4 8 8 C 1.38204 * 120.10813 * 0.02587 * 7 6 5 9 9 C 1.38758 * 120.04812 * 359.97438 * 8 7 6 10 10 O 1.35901 * 120.02029 * 179.97438 * 9 8 7 11 11 C 1.42900 * 117.00372 * 0.02562 * 10 9 8 12 12 C 1.52995 * 109.47105 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47252 * 55.00285 * 12 11 10 14 14 C 1.47197 * 109.47520 * 294.99973 * 12 11 10 15 15 N 8.97601 * 123.63396 * 263.84607 * 2 1 3 16 16 C 1.53000 * 109.46967 * 174.99907 * 12 11 10 17 17 C 1.50700 * 109.47038 * 185.00148 * 16 12 11 18 18 H 1.07998 * 120.00044 * 359.97438 * 17 16 12 19 19 C 1.37874 * 120.00185 * 179.72292 * 17 16 12 20 20 N 1.31513 * 119.99726 * 0.27962 * 19 17 16 21 21 Si 1.86802 * 120.00462 * 180.27232 * 19 17 16 22 22 H 1.48507 * 109.46971 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46917 * 120.00222 * 21 19 17 24 24 H 1.48499 * 109.47476 * 240.00252 * 21 19 17 25 25 C 1.38609 * 120.02750 * 174.90851 * 5 4 2 26 26 C 1.50698 * 109.47263 * 119.99801 * 2 1 3 27 27 N 1.34769 * 120.00423 * 300.00142 * 26 2 1 28 28 O 1.21282 * 119.99671 * 120.00202 * 26 2 1 29 29 H 1.08997 * 109.47424 * 59.99549 * 1 2 3 30 30 H 1.09003 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47069 * 299.99213 * 1 2 3 32 32 H 1.08005 * 119.97189 * 0.04739 * 6 5 4 33 33 H 1.08004 * 119.95050 * 180.02562 * 7 6 5 34 34 H 1.07996 * 119.97522 * 179.97438 * 8 7 6 35 35 H 1.09003 * 109.47061 * 59.99609 * 11 10 9 36 36 H 1.09000 * 109.46711 * 299.99994 * 11 10 9 37 37 H 1.08995 * 109.47255 * 65.00301 * 16 12 11 38 38 H 1.08997 * 109.47457 * 304.99811 * 16 12 11 39 39 H 0.97012 * 120.00013 * 179.97438 * 20 19 17 40 40 H 1.07994 * 120.06077 * 359.97024 * 25 5 4 41 41 H 0.96996 * 120.00409 * 0.02562 * 27 26 2 42 42 H 0.97007 * 120.00222 * 179.97438 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.1086 0.0617 -2.3051 6 6 1.6533 1.3726 -2.3284 7 6 1.7564 2.1205 -3.4854 8 6 2.3123 1.5654 -4.6225 9 6 2.7689 0.2553 -4.6042 10 8 3.3150 -0.2901 -5.7227 11 6 3.3881 0.5429 -6.8815 12 6 4.0278 -0.2379 -8.0313 13 1 3.4742 -1.1625 -8.1950 14 6 5.4243 -0.5557 -7.6916 15 7 6.5016 -0.8011 -7.4303 16 6 3.9928 0.6095 -9.3047 17 6 4.5100 -0.2034 -10.4635 18 1 4.8318 -1.2225 -10.3072 19 6 4.5674 0.3519 -11.7241 20 7 4.1761 1.5930 -11.9143 21 14 5.2013 -0.6582 -13.1619 22 1 5.5757 -2.0146 -12.6870 23 1 4.1395 -0.7711 -14.1938 24 1 6.3922 0.0077 -13.7480 25 6 2.6622 -0.4988 -3.4456 26 6 2.0323 -0.7103 1.2305 27 7 1.7068 -0.2500 2.4545 28 8 2.7296 -1.6964 1.1191 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.2184 1.8086 -1.4412 33 1 1.4019 3.1406 -3.5015 34 1 2.3915 2.1519 -5.5259 35 1 3.9926 1.4223 -6.6593 36 1 2.3839 0.8552 -7.1683 37 1 4.6192 1.4915 -9.1715 38 1 2.9676 0.9192 -9.5072 39 1 4.2169 1.9839 -12.8012 40 1 3.0132 -1.5200 -3.4307 41 1 1.1488 0.5384 2.5436 42 1 2.0299 -0.7075 3.2466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134372539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:28 Heat of formation + Delta-G solvation = -70.368730 kcal Electronic energy + Delta-G solvation = -24988.004266 eV Core-core repulsion = 21126.774123 eV Total energy + Delta-G solvation = -3861.230143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.97304 -39.96249 -38.87707 -36.94399 -35.94214 -34.45867 -33.83361 -32.25843 -32.01364 -30.28971 -29.47422 -27.23373 -25.38437 -24.14391 -22.99853 -22.12933 -21.77664 -20.64611 -19.00296 -18.27017 -17.28320 -17.17977 -16.76056 -16.45405 -16.09501 -15.97253 -15.55822 -15.24616 -14.77641 -14.69564 -14.53656 -14.05483 -13.70670 -13.55068 -13.15943 -13.02796 -12.98281 -12.47459 -12.43351 -12.22187 -12.06754 -11.78468 -11.50667 -11.39258 -11.16972 -11.02261 -10.72701 -10.69902 -10.60799 -10.30924 -10.28184 -10.24014 -9.74280 -9.33347 -8.59379 -8.52071 -8.19711 -6.16332 -4.19780 1.27639 1.31930 2.07626 2.27160 3.09120 3.26069 3.34492 3.39298 3.48793 3.64403 3.65918 3.68324 4.14724 4.26030 4.37131 4.39181 4.63951 4.67658 4.83308 4.87993 5.00863 5.09604 5.11672 5.22307 5.31059 5.42054 5.43607 5.53200 5.68472 5.83740 6.03802 6.11736 6.20832 6.24260 6.31029 6.33087 6.44360 6.70650 7.13598 7.29464 7.39026 7.45627 7.71782 7.79088 8.13475 8.40433 8.84538 9.46336 10.94585 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031572 B = 0.002076 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.656128 B =13486.978238 C =14017.564285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 H 0.103 0.897 4 O -0.284 6.284 5 C 0.163 3.837 6 C -0.255 4.255 7 C -0.040 4.040 8 C -0.242 4.242 9 C 0.180 3.820 10 O -0.310 6.310 11 C 0.065 3.935 12 C 0.012 3.988 13 H 0.114 0.886 14 C 0.243 3.757 15 N -0.466 5.466 16 C 0.034 3.966 17 C -0.527 4.527 18 H 0.060 0.940 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.283 1.283 25 C -0.186 4.186 26 C 0.521 3.479 27 N -0.851 5.851 28 O -0.515 6.515 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.029 0.971 38 H 0.043 0.957 39 H 0.263 0.737 40 H 0.139 0.861 41 H 0.402 0.598 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.214 4.137 26.716 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.006 3.994 3 H 0.121 0.879 4 O -0.196 6.196 5 C 0.118 3.882 6 C -0.274 4.274 7 C -0.058 4.058 8 C -0.261 4.261 9 C 0.134 3.866 10 O -0.223 6.223 11 C -0.010 4.010 12 C -0.010 4.010 13 H 0.132 0.868 14 C -0.075 4.075 15 N -0.142 5.142 16 C -0.004 4.004 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.209 1.209 25 C -0.206 4.206 26 C 0.304 3.696 27 N -0.417 5.417 28 O -0.388 6.388 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.157 0.843 41 H 0.231 0.769 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.020 2.849 26.672 28.999 hybrid contribution -0.356 0.333 -0.619 0.788 sum -11.376 3.182 26.053 28.606 Atomic orbital electron populations 1.22366 0.92449 1.04602 1.04078 1.22145 0.95832 0.97220 0.84253 0.87940 1.86192 1.81017 1.36848 1.15567 1.18501 0.94242 0.89856 0.85643 1.21063 1.11345 0.94564 1.00451 1.20683 0.94729 0.98984 0.91382 1.21312 1.08293 0.95527 1.00964 1.18593 0.90596 0.91058 0.86400 1.86131 1.75706 1.41867 1.18592 1.23131 1.01895 0.93521 0.82495 1.19308 0.83685 1.02568 0.95443 0.86796 1.28882 0.94887 0.92417 0.91281 1.80994 1.12660 1.09738 1.10841 1.19180 0.99296 0.94577 0.87382 1.21121 1.43540 0.99314 0.92561 0.92195 1.24949 0.95028 0.94985 0.98990 1.69942 1.47095 1.13059 1.22814 0.86488 0.78614 0.80492 0.82234 1.19598 1.20785 1.20923 1.19440 1.09232 1.02228 0.89651 1.20149 0.80118 0.84597 0.84721 1.43693 1.56375 1.34100 1.07565 1.90826 1.36212 1.25326 1.86448 0.89994 0.90556 0.90445 0.85524 0.85422 0.84667 0.91192 0.89676 0.95233 0.93915 0.92737 0.84283 0.76933 0.76044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.85 9.06 37.16 0.34 -0.52 16 2 C 0.07 0.50 2.65 -27.89 -0.07 0.42 16 3 H 0.10 0.55 6.31 -51.93 -0.33 0.22 16 4 O -0.28 -3.44 9.33 -39.34 -0.37 -3.81 16 5 C 0.16 1.97 6.60 -39.24 -0.26 1.71 16 6 C -0.26 -2.44 8.23 -39.41 -0.32 -2.76 16 7 C -0.04 -0.39 10.04 -39.63 -0.40 -0.78 16 8 C -0.24 -2.88 9.04 -39.40 -0.36 -3.23 16 9 C 0.18 2.54 6.68 -39.24 -0.26 2.28 16 10 O -0.31 -4.86 9.87 -19.43 -0.19 -5.05 16 11 C 0.07 0.97 4.09 37.16 0.15 1.12 16 12 C 0.01 0.21 2.45 -93.41 -0.23 -0.02 16 13 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 14 C 0.24 5.12 13.71 -20.78 -0.28 4.83 16 15 N -0.47 -10.69 18.53 42.13 0.78 -9.91 16 16 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 17 C -0.53 -13.76 8.60 -34.44 -0.30 -14.06 16 18 H 0.06 1.57 7.59 -52.49 -0.40 1.17 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.19 -2.60 9.93 -39.29 -0.39 -2.99 16 26 C 0.52 4.53 7.50 -10.99 -0.08 4.45 16 27 N -0.85 -3.04 8.77 31.22 0.27 -2.77 16 28 O -0.51 -7.35 17.34 -14.35 -0.25 -7.59 16 29 H 0.08 0.40 6.90 -51.93 -0.36 0.05 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.12 7.56 -51.93 -0.39 -0.27 16 32 H 0.13 0.80 5.42 -52.48 -0.28 0.52 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.14 1.45 6.29 -52.49 -0.33 1.12 16 35 H 0.07 1.00 7.66 -51.93 -0.40 0.60 16 36 H 0.09 1.08 7.66 -51.93 -0.40 0.68 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.26 6.98 8.31 -40.81 -0.34 6.64 16 40 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.40 0.03 8.25 -40.82 -0.34 -0.31 16 42 H 0.41 1.16 8.93 -40.82 -0.36 0.79 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -35.36 366.00 -6.47 -41.83 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.26 Total: -2.77 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.69 Total: -7.31 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 1.79 Total: -36.85 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.81 Total: -16.45 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.36 -6.47 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134372539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.542 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds