Wall clock time and date at job start Tue Mar 31 2020 13:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46842 * 2 1 4 4 O 1.42897 * 109.47395 * 240.00482 * 2 1 3 5 5 C 1.35900 * 117.00294 * 84.79811 * 4 2 1 6 6 C 1.38790 * 120.02580 * 354.62492 * 5 4 2 7 7 C 1.38151 * 120.05876 * 180.02562 * 6 5 4 8 8 C 1.38204 * 120.10813 * 0.02587 * 7 6 5 9 9 C 1.38758 * 120.04812 * 359.97438 * 8 7 6 10 10 O 1.35901 * 120.02029 * 179.97438 * 9 8 7 11 11 C 1.42900 * 117.00372 * 0.02562 * 10 9 8 12 12 C 1.52995 * 109.47105 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47252 * 55.00285 * 12 11 10 14 14 C 1.47197 * 109.47520 * 294.99973 * 12 11 10 15 15 N 8.97601 * 123.63396 * 263.84607 * 2 1 3 16 16 C 1.53000 * 109.46967 * 174.99907 * 12 11 10 17 17 C 1.50700 * 109.47038 * 185.00148 * 16 12 11 18 18 H 1.07998 * 120.00044 * 359.97438 * 17 16 12 19 19 C 1.37874 * 120.00185 * 179.72292 * 17 16 12 20 20 N 1.31513 * 119.99726 * 0.27962 * 19 17 16 21 21 Si 1.86802 * 120.00462 * 180.27232 * 19 17 16 22 22 H 1.48507 * 109.46971 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46917 * 120.00222 * 21 19 17 24 24 H 1.48499 * 109.47476 * 240.00252 * 21 19 17 25 25 C 1.38609 * 120.02750 * 174.90851 * 5 4 2 26 26 C 1.50698 * 109.47263 * 119.99801 * 2 1 3 27 27 N 1.34769 * 120.00423 * 300.00142 * 26 2 1 28 28 O 1.21282 * 119.99671 * 120.00202 * 26 2 1 29 29 H 1.08997 * 109.47424 * 59.99549 * 1 2 3 30 30 H 1.09003 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47069 * 299.99213 * 1 2 3 32 32 H 1.08005 * 119.97189 * 0.04739 * 6 5 4 33 33 H 1.08004 * 119.95050 * 180.02562 * 7 6 5 34 34 H 1.07996 * 119.97522 * 179.97438 * 8 7 6 35 35 H 1.09003 * 109.47061 * 59.99609 * 11 10 9 36 36 H 1.09000 * 109.46711 * 299.99994 * 11 10 9 37 37 H 1.08995 * 109.47255 * 65.00301 * 16 12 11 38 38 H 1.08997 * 109.47457 * 304.99811 * 16 12 11 39 39 H 0.97012 * 120.00013 * 179.97438 * 20 19 17 40 40 H 1.07994 * 120.06077 * 359.97024 * 25 5 4 41 41 H 0.96996 * 120.00409 * 0.02562 * 27 26 2 42 42 H 0.97007 * 120.00222 * 179.97438 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.1086 0.0617 -2.3051 6 6 1.6533 1.3726 -2.3284 7 6 1.7564 2.1205 -3.4854 8 6 2.3123 1.5654 -4.6225 9 6 2.7689 0.2553 -4.6042 10 8 3.3150 -0.2901 -5.7227 11 6 3.3881 0.5429 -6.8815 12 6 4.0278 -0.2379 -8.0313 13 1 3.4742 -1.1625 -8.1950 14 6 5.4243 -0.5557 -7.6916 15 7 6.5016 -0.8011 -7.4303 16 6 3.9928 0.6095 -9.3047 17 6 4.5100 -0.2034 -10.4635 18 1 4.8318 -1.2225 -10.3072 19 6 4.5674 0.3519 -11.7241 20 7 4.1761 1.5930 -11.9143 21 14 5.2013 -0.6582 -13.1619 22 1 5.5757 -2.0146 -12.6870 23 1 4.1395 -0.7711 -14.1938 24 1 6.3922 0.0077 -13.7480 25 6 2.6622 -0.4988 -3.4456 26 6 2.0323 -0.7103 1.2305 27 7 1.7068 -0.2500 2.4545 28 8 2.7296 -1.6964 1.1191 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.2184 1.8086 -1.4412 33 1 1.4019 3.1406 -3.5015 34 1 2.3915 2.1519 -5.5259 35 1 3.9926 1.4223 -6.6593 36 1 2.3839 0.8552 -7.1683 37 1 4.6192 1.4915 -9.1715 38 1 2.9676 0.9192 -9.5072 39 1 4.2169 1.9839 -12.8012 40 1 3.0132 -1.5200 -3.4307 41 1 1.1488 0.5384 2.5436 42 1 2.0299 -0.7075 3.2466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134372539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:27 Heat of formation + Delta-G solvation = -94.935711 kcal Electronic energy + Delta-G solvation = -24989.069570 eV Core-core repulsion = 21126.774123 eV Total energy + Delta-G solvation = -3862.295447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75845 -40.87121 -39.76997 -38.24993 -37.18630 -35.64761 -35.06915 -33.83828 -32.78110 -31.18720 -30.35691 -28.86770 -26.04358 -25.49665 -24.00130 -23.52877 -22.90772 -21.34452 -19.85129 -18.88003 -18.70645 -18.48449 -17.93823 -17.37154 -17.02832 -16.82556 -16.60925 -16.36125 -16.26920 -15.69860 -15.47614 -14.98572 -14.76324 -14.68739 -14.48834 -14.31841 -13.97695 -13.75369 -13.57992 -13.33851 -13.19876 -13.04476 -12.86785 -12.69217 -12.45600 -12.37660 -12.36117 -11.99334 -11.75921 -11.62755 -11.56172 -11.24216 -11.00162 -10.76412 -10.56389 -9.52389 -9.07719 -8.21553 -6.29020 0.40443 0.44129 1.39208 1.42735 1.44251 1.52511 1.57754 1.86797 1.94715 2.25646 2.43039 2.78422 2.82408 3.10435 3.16811 3.67207 3.80804 3.84025 3.92169 3.96419 4.14793 4.18065 4.19387 4.28226 4.48804 4.53813 4.61316 4.68701 4.71606 4.76427 4.93382 5.17461 5.26902 5.32346 5.43071 5.49886 5.55599 5.57567 5.76371 5.80893 6.14992 6.25328 6.40674 6.48208 6.70162 6.84162 7.24283 7.39446 8.89439 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031572 B = 0.002076 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.656128 B =13486.978238 C =14017.564285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.058 3.942 3 H 0.132 0.868 4 O -0.316 6.316 5 C 0.157 3.843 6 C -0.241 4.241 7 C -0.032 4.032 8 C -0.249 4.249 9 C 0.157 3.843 10 O -0.332 6.332 11 C 0.074 3.926 12 C 0.020 3.980 13 H 0.127 0.873 14 C 0.252 3.748 15 N -0.504 5.504 16 C 0.042 3.958 17 C -0.541 4.541 18 H 0.053 0.947 19 C 0.015 3.985 20 N -0.919 5.919 21 Si 0.948 3.052 22 H -0.273 1.273 23 H -0.272 1.272 24 H -0.285 1.285 25 C -0.218 4.218 26 C 0.517 3.483 27 N -0.822 5.822 28 O -0.585 6.585 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.011 0.989 38 H 0.048 0.952 39 H 0.265 0.735 40 H 0.116 0.884 41 H 0.423 0.577 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.366 6.273 28.320 32.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 H 0.149 0.851 4 O -0.229 6.229 5 C 0.112 3.888 6 C -0.260 4.260 7 C -0.050 4.050 8 C -0.268 4.268 9 C 0.111 3.889 10 O -0.246 6.246 11 C -0.001 4.001 12 C -0.002 4.002 13 H 0.145 0.855 14 C -0.064 4.064 15 N -0.181 5.181 16 C 0.003 3.997 17 C -0.579 4.579 18 H 0.071 0.929 19 C -0.185 4.185 20 N -0.559 5.559 21 Si 0.774 3.226 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.211 1.211 25 C -0.237 4.237 26 C 0.301 3.699 27 N -0.389 5.389 28 O -0.464 6.464 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.184 0.816 33 H 0.184 0.816 34 H 0.165 0.835 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.029 0.971 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.134 0.866 41 H 0.256 0.744 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -13.217 5.027 28.330 31.663 hybrid contribution 0.255 -0.301 -0.946 1.025 sum -12.962 4.726 27.384 30.663 Atomic orbital electron populations 1.22398 0.90026 1.04228 1.06290 1.22549 0.97589 0.97879 0.82128 0.85072 1.86161 1.81476 1.38568 1.16700 1.18607 0.94153 0.90898 0.85150 1.21473 1.09569 0.93033 1.01877 1.21154 0.93065 1.00472 0.90317 1.21547 1.08264 0.94507 1.02473 1.18751 0.92072 0.92311 0.85733 1.86052 1.76692 1.42582 1.19267 1.22982 1.03038 0.92583 0.81509 1.19256 0.82532 1.02943 0.95463 0.85496 1.29474 0.95334 0.91371 0.90229 1.80983 1.13862 1.11056 1.12201 1.18978 0.98762 0.93866 0.88051 1.21513 1.43036 0.99408 0.93946 0.92890 1.25651 0.95530 0.95946 1.01362 1.70014 1.48280 1.14158 1.23420 0.85648 0.78169 0.78988 0.79784 1.19712 1.19699 1.21070 1.19508 1.11232 1.01804 0.91184 1.20522 0.79269 0.83819 0.86291 1.43486 1.55066 1.34106 1.06193 1.90801 1.39615 1.28454 1.87483 0.89499 0.92304 0.86409 0.81598 0.81628 0.83531 0.90623 0.86973 0.97055 0.93378 0.92577 0.86565 0.74417 0.75334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 9.06 71.98 0.65 -0.46 16 2 C 0.06 0.75 2.65 29.85 0.08 0.83 16 3 H 0.13 0.88 6.31 -2.39 -0.02 0.87 16 4 O -0.32 -7.66 9.33 -73.39 -0.68 -8.34 16 5 C 0.16 3.71 6.60 22.49 0.15 3.86 16 6 C -0.24 -3.79 8.23 22.38 0.18 -3.60 16 7 C -0.03 -0.51 10.04 22.24 0.22 -0.29 16 8 C -0.25 -5.41 9.04 22.39 0.20 -5.21 16 9 C 0.16 4.44 6.68 22.49 0.15 4.59 16 10 O -0.33 -10.52 9.87 -92.44 -0.91 -11.43 16 11 C 0.07 2.15 4.09 71.98 0.29 2.44 16 12 C 0.02 0.71 2.45 -12.60 -0.03 0.68 16 13 H 0.13 4.31 8.14 -2.39 -0.02 4.29 16 14 C 0.25 10.78 13.71 89.45 1.23 12.00 16 15 N -0.50 -23.59 18.53 20.00 0.37 -23.22 16 16 C 0.04 1.85 4.42 29.85 0.13 1.98 16 17 C -0.54 -28.26 8.60 25.60 0.22 -28.04 16 18 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 19 C 0.01 0.78 5.46 84.65 0.46 1.25 16 20 N -0.92 -51.35 13.29 21.45 0.28 -51.06 16 21 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 25 C -0.22 -6.35 9.93 22.46 0.22 -6.13 16 26 C 0.52 8.48 7.50 87.66 0.66 9.14 16 27 N -0.82 -3.89 8.77 -173.54 -1.52 -5.41 16 28 O -0.58 -17.34 17.34 16.00 0.28 -17.07 16 29 H 0.09 0.52 6.90 -2.39 -0.02 0.51 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.12 -0.22 7.56 -2.39 -0.02 -0.24 16 32 H 0.17 1.20 5.42 -2.91 -0.02 1.18 16 33 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.15 2.76 6.29 -2.91 -0.02 2.74 16 35 H 0.08 2.08 7.66 -2.39 -0.02 2.07 16 36 H 0.11 2.62 7.66 -2.39 -0.02 2.60 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 40 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 41 H 0.42 -1.60 8.25 -92.71 -0.76 -2.37 16 42 H 0.41 1.55 8.93 -92.70 -0.83 0.72 16 Total: -1.00 -80.80 366.00 4.16 -76.65 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -0.51 Total: 1.66 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.82 Total: -6.96 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -0.87 Total: -79.69 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.32 Total: -36.85 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -80.80 4.16 -76.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134372539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.290 kcal (2) G-P(sol) polarization free energy of solvation -80.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds