Wall clock time and date at job start Tue Mar 31 2020 13:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47108 * 2 1 4 4 O 1.42897 * 109.46980 * 120.00569 * 2 1 3 5 5 C 1.35897 * 117.00252 * 275.14153 * 4 2 1 6 6 C 1.38798 * 120.02303 * 5.46362 * 5 4 2 7 7 C 1.38150 * 120.05403 * 180.02562 * 6 5 4 8 8 C 1.38209 * 120.10791 * 359.72750 * 7 6 5 9 9 C 1.38751 * 120.05232 * 0.54937 * 8 7 6 10 10 O 1.35899 * 120.02618 * 179.72246 * 9 8 7 11 11 C 1.42897 * 116.99674 * 359.72732 * 10 9 8 12 12 C 1.53007 * 109.46876 * 180.02562 * 11 10 9 13 13 H 1.09006 * 109.46746 * 54.99738 * 12 11 10 14 14 C 1.47202 * 109.46899 * 295.00385 * 12 11 10 15 15 N 9.03443 * 96.12150 * 104.30057 * 2 1 3 16 16 C 1.53001 * 109.47163 * 174.99880 * 12 11 10 17 17 C 1.50697 * 109.46909 * 185.00120 * 16 12 11 18 18 H 1.07998 * 120.00429 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00143 * 179.72573 * 17 16 12 20 20 N 1.31517 * 119.99404 * 0.27689 * 19 17 16 21 21 Si 1.86797 * 120.00452 * 180.27313 * 19 17 16 22 22 H 1.48502 * 109.47163 * 89.99975 * 21 19 17 23 23 H 1.48500 * 109.47190 * 210.00325 * 21 19 17 24 24 H 1.48501 * 109.46873 * 330.00350 * 21 19 17 25 25 C 1.38610 * 120.03099 * 185.49182 * 5 4 2 26 26 C 1.50700 * 109.46871 * 240.00380 * 2 1 3 27 27 N 1.34783 * 119.99970 * 64.99873 * 26 2 1 28 28 O 1.21283 * 120.00325 * 245.00323 * 26 2 1 29 29 H 1.09002 * 109.47473 * 59.99735 * 1 2 3 30 30 H 1.09002 * 109.47035 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46942 * 299.99512 * 1 2 3 32 32 H 1.08002 * 119.97525 * 0.04805 * 6 5 4 33 33 H 1.07996 * 119.94825 * 180.02562 * 7 6 5 34 34 H 1.07997 * 119.97315 * 180.29784 * 8 7 6 35 35 H 1.08994 * 109.47598 * 60.00361 * 11 10 9 36 36 H 1.08996 * 109.47469 * 299.99749 * 11 10 9 37 37 H 1.09001 * 109.46561 * 65.00261 * 16 12 11 38 38 H 1.08995 * 109.47212 * 305.00124 * 16 12 11 39 39 H 0.97003 * 119.99524 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.05106 * 359.95485 * 25 5 4 41 41 H 0.96995 * 119.99977 * 0.02562 * 27 26 2 42 42 H 0.97002 * 119.99925 * 179.97438 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1097 0.0616 2.3049 6 6 1.6539 1.3724 2.3286 7 6 1.7591 2.1206 3.4851 8 6 2.3131 1.5645 4.6227 9 6 2.7754 0.2565 4.6023 10 8 3.3252 -0.2880 5.7195 11 6 3.4008 0.5457 6.8776 12 6 4.0444 -0.2340 8.0261 13 1 5.0116 -0.6211 7.7053 14 6 3.1700 -1.3545 8.4091 15 7 2.4935 -2.2189 8.7046 16 6 4.2393 0.6944 9.2265 17 6 4.9834 -0.0387 10.3128 18 1 5.2873 -1.0640 10.1619 19 6 5.2818 0.6015 11.4969 20 7 4.9121 1.8503 11.6805 21 14 6.2108 -0.3047 12.8404 22 1 7.6705 -0.1058 12.6534 23 1 5.8049 0.2254 14.1669 24 1 5.8956 -1.7541 12.7690 25 6 2.6709 -0.4966 3.4428 26 6 2.0323 -0.7103 -1.2305 27 7 1.7918 -0.1940 -2.4521 28 8 2.6529 -1.7467 -1.1217 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2163 1.8076 1.4423 33 1 1.4036 3.1402 3.5018 34 1 2.3899 2.1499 5.5270 35 1 2.3972 0.8573 7.1672 36 1 4.0039 1.4254 6.6533 37 1 3.2665 1.0111 9.6026 38 1 4.8128 1.5692 8.9200 39 1 5.1216 2.3006 12.5137 40 1 3.0258 -1.5164 3.4263 41 1 1.2958 0.6350 -2.5391 42 1 2.1154 -0.6510 -3.2441 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134372562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:32 Heat of formation + Delta-G solvation = -70.579508 kcal Electronic energy + Delta-G solvation = -24984.698461 eV Core-core repulsion = 21123.459178 eV Total energy + Delta-G solvation = -3861.239283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.97272 -39.96325 -38.87883 -36.93954 -35.93084 -34.43267 -33.82470 -32.27524 -32.01692 -30.29433 -29.47567 -27.23346 -25.38021 -24.14394 -22.99967 -22.13080 -21.77752 -20.65156 -19.00603 -18.24809 -17.29294 -17.18870 -16.77570 -16.39389 -16.10261 -15.92349 -15.68134 -15.18733 -14.92338 -14.58225 -14.49415 -14.06253 -13.69937 -13.63290 -13.11841 -13.04632 -12.83201 -12.69176 -12.32456 -12.21006 -12.04262 -11.78892 -11.58671 -11.31521 -11.16037 -11.05336 -10.71118 -10.69142 -10.62252 -10.32996 -10.26838 -10.24297 -9.73818 -9.34951 -8.59556 -8.51452 -8.19881 -6.16095 -4.19613 1.27456 1.31676 2.08232 2.25725 3.09045 3.27089 3.34007 3.38848 3.48456 3.63346 3.66006 3.67615 4.14792 4.26905 4.37237 4.38745 4.63864 4.67468 4.83809 4.88279 5.01104 5.09717 5.11845 5.22428 5.30883 5.41880 5.43397 5.54170 5.68414 5.83574 6.03643 6.11599 6.20607 6.24104 6.30907 6.32921 6.44195 6.70350 7.13546 7.29442 7.38955 7.45490 7.71488 7.79070 8.13576 8.40155 8.84388 9.46395 10.94787 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.002062 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.281702 B =13574.508331 C =13914.865816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 H 0.102 0.898 4 O -0.284 6.284 5 C 0.163 3.837 6 C -0.255 4.255 7 C -0.040 4.040 8 C -0.242 4.242 9 C 0.180 3.820 10 O -0.310 6.310 11 C 0.065 3.935 12 C 0.012 3.988 13 H 0.114 0.886 14 C 0.243 3.757 15 N -0.466 5.466 16 C 0.034 3.966 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.894 3.106 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.186 4.186 26 C 0.522 3.478 27 N -0.851 5.851 28 O -0.515 6.515 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.029 0.971 38 H 0.043 0.957 39 H 0.264 0.736 40 H 0.139 0.861 41 H 0.402 0.598 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.571 5.883 -28.080 29.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.006 3.994 3 H 0.120 0.880 4 O -0.196 6.196 5 C 0.117 3.883 6 C -0.274 4.274 7 C -0.058 4.058 8 C -0.261 4.261 9 C 0.134 3.866 10 O -0.223 6.223 11 C -0.010 4.010 12 C -0.010 4.010 13 H 0.132 0.868 14 C -0.075 4.075 15 N -0.143 5.143 16 C -0.004 4.004 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.722 3.278 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.206 4.206 26 C 0.304 3.696 27 N -0.417 5.417 28 O -0.388 6.388 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.157 0.843 41 H 0.231 0.769 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.068 3.632 -27.200 28.901 hybrid contribution 0.509 0.634 0.353 0.886 sum -8.560 4.266 -26.848 28.500 Atomic orbital electron populations 1.22358 0.92414 1.04632 1.04076 1.22143 0.95888 0.97142 0.84238 0.88017 1.86196 1.81009 1.36836 1.15586 1.18506 0.94222 0.89854 0.85687 1.21066 1.11304 0.94542 1.00503 1.20684 0.94731 0.98994 0.91372 1.21313 1.08308 0.95578 1.00893 1.18590 0.90670 0.91042 0.86347 1.86131 1.75520 1.41992 1.18647 1.23131 1.01852 0.93675 0.82387 1.19314 0.95367 0.90547 0.95765 0.86795 1.28938 0.93198 0.93673 0.91651 1.81046 1.11008 1.11768 1.10454 1.19175 0.98649 0.93616 0.88953 1.21080 1.36873 0.98862 0.99785 0.92254 1.24949 0.95702 0.94883 0.98403 1.69933 1.46180 1.10737 1.26056 0.86540 0.80062 0.80127 0.81081 1.20386 1.21112 1.19790 1.19444 1.09169 1.02224 0.89717 1.20151 0.79424 0.85282 0.84712 1.43690 1.60739 1.29543 1.07766 1.90824 1.38728 1.22870 1.86379 0.90414 0.90561 0.90013 0.85518 0.85422 0.84667 0.91177 0.89684 0.95231 0.93927 0.92685 0.84282 0.76933 0.76038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 9.12 37.16 0.34 -0.57 16 2 C 0.07 0.50 2.64 -27.88 -0.07 0.43 16 3 H 0.10 0.52 6.32 -51.93 -0.33 0.19 16 4 O -0.28 -3.44 9.34 -39.28 -0.37 -3.81 16 5 C 0.16 1.96 6.60 -39.24 -0.26 1.71 16 6 C -0.26 -2.43 8.24 -39.41 -0.32 -2.75 16 7 C -0.04 -0.39 10.04 -39.62 -0.40 -0.78 16 8 C -0.24 -2.87 9.04 -39.40 -0.36 -3.23 16 9 C 0.18 2.54 6.68 -39.24 -0.26 2.28 16 10 O -0.31 -4.85 9.87 -19.42 -0.19 -5.05 16 11 C 0.07 0.97 4.09 37.16 0.15 1.12 16 12 C 0.01 0.21 2.45 -93.40 -0.23 -0.02 16 13 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 14 C 0.24 5.10 13.71 -20.74 -0.28 4.82 16 15 N -0.47 -10.67 18.54 42.18 0.78 -9.88 16 16 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 17 C -0.53 -13.77 8.60 -34.44 -0.30 -14.07 16 18 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -24.90 13.29 55.43 0.74 -24.17 16 21 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.19 -2.60 9.93 -39.29 -0.39 -2.99 16 26 C 0.52 4.49 7.45 -10.98 -0.08 4.41 16 27 N -0.85 -2.98 8.84 31.22 0.28 -2.71 16 28 O -0.51 -7.27 17.34 -14.30 -0.25 -7.52 16 29 H 0.08 0.15 7.93 -51.93 -0.41 -0.27 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.43 6.90 -51.93 -0.36 0.07 16 32 H 0.13 0.80 5.42 -52.49 -0.28 0.51 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.14 1.45 6.29 -52.49 -0.33 1.12 16 35 H 0.07 0.99 7.65 -51.93 -0.40 0.60 16 36 H 0.09 1.08 7.67 -51.93 -0.40 0.68 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.40 0.01 8.61 -40.82 -0.35 -0.35 16 42 H 0.41 1.12 8.93 -40.82 -0.36 0.76 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -35.27 366.82 -6.48 -41.75 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -5.29 Total: -2.79 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.68 Total: -7.40 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 1.79 Total: -36.76 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.81 Total: -16.37 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.27 -6.48 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134372562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.832 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds