Wall clock time and date at job start Tue Mar 31 2020 13:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47108 * 2 1 4 4 O 1.42897 * 109.46980 * 120.00569 * 2 1 3 5 5 C 1.35897 * 117.00252 * 275.14153 * 4 2 1 6 6 C 1.38798 * 120.02303 * 5.46362 * 5 4 2 7 7 C 1.38150 * 120.05403 * 180.02562 * 6 5 4 8 8 C 1.38209 * 120.10791 * 359.72750 * 7 6 5 9 9 C 1.38751 * 120.05232 * 0.54937 * 8 7 6 10 10 O 1.35899 * 120.02618 * 179.72246 * 9 8 7 11 11 C 1.42897 * 116.99674 * 359.72732 * 10 9 8 12 12 C 1.53007 * 109.46876 * 180.02562 * 11 10 9 13 13 H 1.09006 * 109.46746 * 54.99738 * 12 11 10 14 14 C 1.47202 * 109.46899 * 295.00385 * 12 11 10 15 15 N 9.03443 * 96.12150 * 104.30057 * 2 1 3 16 16 C 1.53001 * 109.47163 * 174.99880 * 12 11 10 17 17 C 1.50697 * 109.46909 * 185.00120 * 16 12 11 18 18 H 1.07998 * 120.00429 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00143 * 179.72573 * 17 16 12 20 20 N 1.31517 * 119.99404 * 0.27689 * 19 17 16 21 21 Si 1.86797 * 120.00452 * 180.27313 * 19 17 16 22 22 H 1.48502 * 109.47163 * 89.99975 * 21 19 17 23 23 H 1.48500 * 109.47190 * 210.00325 * 21 19 17 24 24 H 1.48501 * 109.46873 * 330.00350 * 21 19 17 25 25 C 1.38610 * 120.03099 * 185.49182 * 5 4 2 26 26 C 1.50700 * 109.46871 * 240.00380 * 2 1 3 27 27 N 1.34783 * 119.99970 * 64.99873 * 26 2 1 28 28 O 1.21283 * 120.00325 * 245.00323 * 26 2 1 29 29 H 1.09002 * 109.47473 * 59.99735 * 1 2 3 30 30 H 1.09002 * 109.47035 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46942 * 299.99512 * 1 2 3 32 32 H 1.08002 * 119.97525 * 0.04805 * 6 5 4 33 33 H 1.07996 * 119.94825 * 180.02562 * 7 6 5 34 34 H 1.07997 * 119.97315 * 180.29784 * 8 7 6 35 35 H 1.08994 * 109.47598 * 60.00361 * 11 10 9 36 36 H 1.08996 * 109.47469 * 299.99749 * 11 10 9 37 37 H 1.09001 * 109.46561 * 65.00261 * 16 12 11 38 38 H 1.08995 * 109.47212 * 305.00124 * 16 12 11 39 39 H 0.97003 * 119.99524 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.05106 * 359.95485 * 25 5 4 41 41 H 0.96995 * 119.99977 * 0.02562 * 27 26 2 42 42 H 0.97002 * 119.99925 * 179.97438 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1097 0.0616 2.3049 6 6 1.6539 1.3724 2.3286 7 6 1.7591 2.1206 3.4851 8 6 2.3131 1.5645 4.6227 9 6 2.7754 0.2565 4.6023 10 8 3.3252 -0.2880 5.7195 11 6 3.4008 0.5457 6.8776 12 6 4.0444 -0.2340 8.0261 13 1 5.0116 -0.6211 7.7053 14 6 3.1700 -1.3545 8.4091 15 7 2.4935 -2.2189 8.7046 16 6 4.2393 0.6944 9.2265 17 6 4.9834 -0.0387 10.3128 18 1 5.2873 -1.0640 10.1619 19 6 5.2818 0.6015 11.4969 20 7 4.9121 1.8503 11.6805 21 14 6.2108 -0.3047 12.8404 22 1 7.6705 -0.1058 12.6534 23 1 5.8049 0.2254 14.1669 24 1 5.8956 -1.7541 12.7690 25 6 2.6709 -0.4966 3.4428 26 6 2.0323 -0.7103 -1.2305 27 7 1.7918 -0.1940 -2.4521 28 8 2.6529 -1.7467 -1.1217 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2163 1.8076 1.4423 33 1 1.4036 3.1402 3.5018 34 1 2.3899 2.1499 5.5270 35 1 2.3972 0.8573 7.1672 36 1 4.0039 1.4254 6.6533 37 1 3.2665 1.0111 9.6026 38 1 4.8128 1.5692 8.9200 39 1 5.1216 2.3006 12.5137 40 1 3.0258 -1.5164 3.4263 41 1 1.2958 0.6350 -2.5391 42 1 2.1154 -0.6510 -3.2441 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134372562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:31 Heat of formation + Delta-G solvation = -95.080870 kcal Electronic energy + Delta-G solvation = -24985.760920 eV Core-core repulsion = 21123.459178 eV Total energy + Delta-G solvation = -3862.301741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.75735 -40.86862 -39.76691 -38.23685 -37.17864 -35.63805 -35.03623 -33.83475 -32.80602 -31.19577 -30.35791 -28.86635 -26.04677 -25.49644 -24.00042 -23.52796 -22.90734 -21.34730 -19.85164 -18.86401 -18.69652 -18.48564 -17.95083 -17.36809 -16.93728 -16.79219 -16.61189 -16.57982 -16.15824 -15.75741 -15.37054 -15.03692 -14.76727 -14.68076 -14.49757 -14.30623 -13.93745 -13.77919 -13.57830 -13.37864 -13.15480 -13.00651 -12.88927 -12.71940 -12.47776 -12.46106 -12.18398 -12.09107 -11.73766 -11.62864 -11.56311 -11.25670 -10.99692 -10.75807 -10.55440 -9.52446 -9.07753 -8.21267 -6.28790 0.40454 0.44060 1.40632 1.42804 1.45533 1.51393 1.56685 1.86189 1.94112 2.25532 2.43207 2.78389 2.82717 3.10357 3.16907 3.67275 3.81673 3.84126 3.91093 3.96384 4.14683 4.18075 4.19365 4.28272 4.48689 4.53552 4.61261 4.67810 4.69744 4.76339 4.93164 5.15640 5.26813 5.32383 5.42964 5.49893 5.55618 5.57580 5.76359 5.81439 6.15088 6.25383 6.40936 6.48433 6.70222 6.84112 7.24774 7.39554 8.89515 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.002062 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.281702 B =13574.508331 C =13914.865816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.058 3.942 3 H 0.134 0.866 4 O -0.316 6.316 5 C 0.157 3.843 6 C -0.241 4.241 7 C -0.032 4.032 8 C -0.249 4.249 9 C 0.157 3.843 10 O -0.332 6.332 11 C 0.074 3.926 12 C 0.020 3.980 13 H 0.127 0.873 14 C 0.252 3.748 15 N -0.504 5.504 16 C 0.042 3.958 17 C -0.542 4.542 18 H 0.053 0.947 19 C 0.015 3.985 20 N -0.919 5.919 21 Si 0.948 3.052 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.279 1.279 25 C -0.218 4.218 26 C 0.518 3.482 27 N -0.822 5.822 28 O -0.584 6.584 29 H 0.118 0.882 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.011 0.989 38 H 0.048 0.952 39 H 0.265 0.735 40 H 0.116 0.884 41 H 0.423 0.577 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 8.497 -30.070 32.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.001 4.001 3 H 0.151 0.849 4 O -0.229 6.229 5 C 0.112 3.888 6 C -0.259 4.259 7 C -0.050 4.050 8 C -0.268 4.268 9 C 0.111 3.889 10 O -0.246 6.246 11 C -0.001 4.001 12 C -0.002 4.002 13 H 0.145 0.855 14 C -0.064 4.064 15 N -0.181 5.181 16 C 0.004 3.996 17 C -0.580 4.580 18 H 0.071 0.929 19 C -0.185 4.185 20 N -0.558 5.558 21 Si 0.774 3.226 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.204 1.204 25 C -0.237 4.237 26 C 0.301 3.699 27 N -0.389 5.389 28 O -0.463 6.463 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.184 0.816 33 H 0.184 0.816 34 H 0.165 0.835 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.030 0.970 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.134 0.866 41 H 0.256 0.744 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -9.955 6.295 -29.247 31.530 hybrid contribution 0.715 -0.149 0.801 1.084 sum -9.240 6.146 -28.446 30.534 Atomic orbital electron populations 1.22390 0.90315 1.04066 1.06232 1.22543 0.97414 0.97978 0.82146 0.84850 1.86166 1.81445 1.38581 1.16735 1.18611 0.94128 0.90895 0.85195 1.21475 1.09520 0.93002 1.01931 1.21154 0.93051 1.00491 0.90303 1.21547 1.08283 0.94570 1.02387 1.18748 0.92176 0.92286 0.85659 1.86053 1.76461 1.42800 1.19277 1.22981 1.02392 0.93388 0.81352 1.19259 0.95957 0.89226 0.95743 0.85533 1.29521 0.92674 0.93580 0.90631 1.81035 1.12404 1.13023 1.11635 1.18972 0.97100 0.94060 0.89491 1.21481 1.36727 0.98833 1.00955 0.92902 1.25654 0.96718 0.95638 1.00475 1.70009 1.47376 1.11771 1.26681 0.85695 0.79524 0.78546 0.78801 1.19190 1.20865 1.20392 1.19511 1.11179 1.01789 0.91257 1.20504 0.78585 0.84517 0.86249 1.43482 1.59219 1.29769 1.06392 1.90799 1.42140 1.25910 1.87406 0.86401 0.92570 0.89605 0.81576 0.81620 0.83538 0.90546 0.87045 0.97027 0.93425 0.92577 0.86576 0.74418 0.75315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 9.12 71.98 0.66 -0.60 16 2 C 0.06 0.76 2.64 29.85 0.08 0.84 16 3 H 0.13 0.81 6.32 -2.39 -0.02 0.79 16 4 O -0.32 -7.66 9.34 -73.41 -0.69 -8.35 16 5 C 0.16 3.69 6.60 22.49 0.15 3.84 16 6 C -0.24 -3.76 8.24 22.38 0.18 -3.57 16 7 C -0.03 -0.51 10.04 22.24 0.22 -0.28 16 8 C -0.25 -5.40 9.04 22.39 0.20 -5.19 16 9 C 0.16 4.43 6.68 22.49 0.15 4.58 16 10 O -0.33 -10.51 9.87 -92.41 -0.91 -11.42 16 11 C 0.07 2.15 4.09 71.98 0.29 2.44 16 12 C 0.02 0.71 2.45 -12.60 -0.03 0.68 16 13 H 0.13 4.30 8.14 -2.38 -0.02 4.28 16 14 C 0.25 10.75 13.71 89.43 1.23 11.97 16 15 N -0.50 -23.50 18.54 20.01 0.37 -23.13 16 16 C 0.04 1.87 4.42 29.85 0.13 2.00 16 17 C -0.54 -28.30 8.60 25.60 0.22 -28.08 16 18 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 19 C 0.01 0.79 5.46 84.65 0.46 1.25 16 20 N -0.92 -51.33 13.29 21.45 0.28 -51.04 16 21 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 25 C -0.22 -6.35 9.93 22.46 0.22 -6.12 16 26 C 0.52 8.37 7.45 87.66 0.65 9.02 16 27 N -0.82 -3.72 8.84 -173.52 -1.53 -5.25 16 28 O -0.58 -17.10 17.34 15.95 0.28 -16.82 16 29 H 0.12 -0.12 7.93 -2.39 -0.02 -0.14 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.60 6.90 -2.39 -0.02 0.58 16 32 H 0.17 1.18 5.42 -2.91 -0.02 1.16 16 33 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 34 H 0.15 2.75 6.29 -2.91 -0.02 2.74 16 35 H 0.08 2.09 7.65 -2.39 -0.02 2.08 16 36 H 0.11 2.61 7.67 -2.39 -0.02 2.60 16 37 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 40 H 0.12 3.73 8.06 -2.91 -0.02 3.70 16 41 H 0.42 -1.67 8.61 -92.71 -0.80 -2.47 16 42 H 0.41 1.45 8.93 -92.71 -0.83 0.62 16 Total: -1.00 -80.57 366.82 4.11 -76.46 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -0.54 Total: 1.60 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 4.82 Total: -7.24 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -0.88 Total: -79.42 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.32 Total: -36.59 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -80.57 4.11 -76.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134372562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.618 kcal (2) G-P(sol) polarization free energy of solvation -80.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds