Wall clock time and date at job start Tue Mar 31 2020 13:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46976 * 2 1 4 4 O 1.42904 * 109.46828 * 240.00710 * 2 1 3 5 5 C 1.35902 * 116.99886 * 84.96635 * 4 2 1 6 6 C 1.38796 * 120.02875 * 354.57513 * 5 4 2 7 7 C 1.38152 * 120.05250 * 179.97438 * 6 5 4 8 8 C 1.38197 * 120.11182 * 0.02562 * 7 6 5 9 9 C 1.38756 * 120.05507 * 359.97438 * 8 7 6 10 10 O 1.35895 * 120.02987 * 180.02562 * 9 8 7 11 11 C 1.42908 * 116.99824 * 359.97438 * 10 9 8 12 12 C 1.52994 * 109.46973 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.47491 * 305.00226 * 12 11 10 14 14 C 1.47201 * 109.47316 * 64.99846 * 12 11 10 15 15 N 9.03539 * 96.15404 * 255.75094 * 2 1 3 16 16 C 1.53001 * 109.47010 * 185.00222 * 12 11 10 17 17 C 1.50707 * 109.46790 * 174.99920 * 16 12 11 18 18 H 1.07995 * 120.00223 * 359.97438 * 17 16 12 19 19 C 1.37881 * 119.99523 * 179.97438 * 17 16 12 20 20 N 1.31510 * 119.99569 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00026 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47403 * 89.99751 * 21 19 17 23 23 H 1.48498 * 109.47082 * 209.99592 * 21 19 17 24 24 H 1.48500 * 109.47358 * 329.99694 * 21 19 17 25 25 C 1.38612 * 120.02612 * 174.30198 * 5 4 2 26 26 C 1.50689 * 109.47519 * 120.00560 * 2 1 3 27 27 N 1.34784 * 120.00340 * 294.99986 * 26 2 1 28 28 O 1.21284 * 120.00427 * 114.99595 * 26 2 1 29 29 H 1.09001 * 109.46781 * 299.99310 * 1 2 3 30 30 H 1.08996 * 109.46951 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47010 * 59.98970 * 1 2 3 32 32 H 1.08002 * 119.96853 * 359.97438 * 6 5 4 33 33 H 1.08003 * 119.94710 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.97396 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.47072 * 300.00331 * 11 10 9 36 36 H 1.08999 * 109.46763 * 59.99911 * 11 10 9 37 37 H 1.08998 * 109.46912 * 294.99389 * 16 12 11 38 38 H 1.08996 * 109.47282 * 55.00229 * 16 12 11 39 39 H 0.97000 * 119.99779 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.05109 * 0.02562 * 25 5 4 41 41 H 0.97006 * 119.99242 * 359.97438 * 27 26 2 42 42 H 0.96993 * 119.99987 * 179.97438 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.1118 0.0627 -2.3044 6 6 1.6588 1.3745 -2.3272 7 6 1.7662 2.1235 -3.4830 8 6 2.3242 1.5689 -4.6192 9 6 2.7785 0.2580 -4.6015 10 8 3.3276 -0.2867 -5.7189 11 6 3.4050 0.5477 -6.8765 12 6 4.0463 -0.2327 -8.0256 13 1 5.0126 -0.6226 -7.7054 14 6 3.1690 -1.3507 -8.4094 15 7 2.4986 -2.2111 -8.7070 16 6 4.2434 0.6960 -9.2254 17 6 4.9854 -0.0382 -10.3124 18 1 5.2867 -1.0643 -10.1624 19 6 5.2796 0.6003 -11.4986 20 7 5.9275 -0.0402 -12.4469 21 14 4.7591 2.3755 -11.7578 22 1 5.8389 3.2814 -11.2900 23 1 4.5062 2.6113 -13.2020 24 1 3.5184 2.6451 -10.9875 25 6 2.6769 -0.4940 -3.4410 26 6 2.0324 -0.7105 1.2303 27 7 1.7921 -0.1944 2.4520 28 8 2.6530 -1.7468 1.1213 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5140 -0.8899 32 1 1.2220 1.8099 -1.4406 33 1 1.4136 3.1442 -3.4988 34 1 2.4075 2.1566 -5.5215 35 1 2.4021 0.8614 -7.1660 36 1 4.0097 1.4262 -6.6514 37 1 3.2713 1.0155 -9.6011 38 1 4.8192 1.5691 -8.9184 39 1 6.1348 0.4091 -13.2812 40 1 3.0336 -1.5133 -3.4240 41 1 1.2959 0.6346 2.5392 42 1 2.1151 -0.6519 3.2438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134372583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:36 Heat of formation + Delta-G solvation = -65.139223 kcal Electronic energy + Delta-G solvation = -25044.820834 eV Core-core repulsion = 21183.817460 eV Total energy + Delta-G solvation = -3861.003374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01615 -40.02219 -38.93298 -37.04790 -36.05743 -34.45628 -33.91509 -32.31311 -32.09908 -30.39807 -29.55754 -27.72099 -25.42407 -24.20693 -23.04028 -22.08554 -21.58460 -20.67738 -19.04903 -18.27965 -17.36388 -17.21777 -17.05075 -16.59134 -16.16395 -16.02787 -15.73679 -15.27298 -14.98016 -14.55934 -14.38930 -14.06160 -13.73795 -13.61958 -13.44890 -13.09398 -12.92399 -12.71022 -12.49264 -12.31071 -12.23322 -11.86929 -11.77810 -11.43842 -11.30472 -11.16789 -10.79527 -10.73500 -10.49495 -10.31203 -10.26414 -10.17614 -9.89331 -9.41835 -8.67679 -8.64916 -8.26359 -6.15872 -4.17799 1.21662 1.25621 2.05838 2.21905 3.03521 3.21510 3.29670 3.30956 3.44334 3.58841 3.61832 3.65436 4.11624 4.23870 4.32621 4.35438 4.56298 4.59221 4.78850 4.83529 4.94989 5.02541 5.07466 5.17693 5.19460 5.31549 5.36455 5.51019 5.56141 5.75870 5.94330 6.04510 6.10512 6.14677 6.19824 6.26171 6.36069 6.67722 6.78146 6.98813 7.08719 7.36578 7.55155 7.69233 8.32293 8.37823 8.87363 9.42472 10.96981 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028342 B = 0.002175 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.691270 B =12873.030928 C =13331.661235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 H 0.102 0.898 4 O -0.283 6.283 5 C 0.164 3.836 6 C -0.255 4.255 7 C -0.040 4.040 8 C -0.243 4.243 9 C 0.180 3.820 10 O -0.308 6.308 11 C 0.063 3.937 12 C 0.021 3.979 13 H 0.120 0.880 14 C 0.241 3.759 15 N -0.457 5.457 16 C -0.002 4.002 17 C -0.531 4.531 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.893 5.893 21 Si 0.878 3.122 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.264 1.264 25 C -0.185 4.185 26 C 0.521 3.479 27 N -0.851 5.851 28 O -0.514 6.514 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.028 0.972 38 H 0.037 0.963 39 H 0.266 0.734 40 H 0.140 0.860 41 H 0.402 0.598 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.000 9.983 30.067 33.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.006 3.994 3 H 0.120 0.880 4 O -0.196 6.196 5 C 0.118 3.882 6 C -0.274 4.274 7 C -0.058 4.058 8 C -0.262 4.262 9 C 0.133 3.867 10 O -0.221 6.221 11 C -0.013 4.013 12 C -0.001 4.001 13 H 0.137 0.863 14 C -0.077 4.077 15 N -0.133 5.133 16 C -0.040 4.040 17 C -0.568 4.568 18 H 0.094 0.906 19 C -0.131 4.131 20 N -0.531 5.531 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.189 1.189 25 C -0.204 4.204 26 C 0.304 3.696 27 N -0.417 5.417 28 O -0.388 6.388 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.158 0.842 41 H 0.231 0.769 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.413 7.603 29.126 32.193 hybrid contribution -0.161 1.920 0.138 1.932 sum -11.574 9.523 29.264 32.878 Atomic orbital electron populations 1.22355 0.92392 1.04660 1.04068 1.22150 0.95902 0.97138 0.84233 0.88019 1.86204 1.80986 1.36764 1.15620 1.18511 0.94095 0.89833 0.85739 1.21072 1.11287 0.94504 1.00492 1.20674 0.94721 0.99003 0.91393 1.21283 1.08536 0.95471 1.00907 1.18584 0.90759 0.91044 0.86309 1.86138 1.75611 1.41730 1.18582 1.23132 1.01802 0.93679 0.82657 1.19021 0.95917 0.90347 0.94810 0.86265 1.28513 0.93327 0.93812 0.92033 1.80802 1.11189 1.11518 1.09815 1.19630 0.98331 0.94583 0.91488 1.20953 1.36827 1.00669 0.98387 0.90557 1.24982 0.94320 0.98068 0.95684 1.69897 1.39718 1.37260 1.06218 0.86819 0.79668 0.85306 0.77776 1.19922 1.21205 1.18864 1.19456 1.08972 1.02350 0.89666 1.20142 0.79448 0.85292 0.84706 1.43691 1.60751 1.29526 1.07766 1.90827 1.38702 1.22855 1.86368 0.90392 0.90530 0.90043 0.85481 0.85441 0.84791 0.91168 0.89717 0.95348 0.94452 0.92435 0.84190 0.76938 0.76017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.86 9.12 37.16 0.34 -0.52 16 2 C 0.07 0.48 2.63 -27.89 -0.07 0.41 16 3 H 0.10 0.49 6.31 -51.93 -0.33 0.16 16 4 O -0.28 -3.34 9.34 -39.29 -0.37 -3.71 16 5 C 0.16 1.91 6.60 -39.24 -0.26 1.65 16 6 C -0.25 -2.30 8.24 -39.41 -0.32 -2.63 16 7 C -0.04 -0.36 10.04 -39.63 -0.40 -0.76 16 8 C -0.24 -2.70 9.04 -39.41 -0.36 -3.06 16 9 C 0.18 2.42 6.68 -39.24 -0.26 2.16 16 10 O -0.31 -4.62 9.87 -19.41 -0.19 -4.81 16 11 C 0.06 0.87 4.09 37.15 0.15 1.03 16 12 C 0.02 0.36 2.45 -93.41 -0.23 0.13 16 13 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 14 C 0.24 5.00 13.69 -20.94 -0.29 4.71 16 15 N -0.46 -10.43 18.50 41.95 0.78 -9.65 16 16 C 0.00 -0.04 3.49 -27.88 -0.10 -0.14 16 17 C -0.53 -14.01 9.15 -34.44 -0.32 -14.32 16 18 H 0.08 2.23 7.84 -52.49 -0.41 1.81 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 21 Si 0.88 20.04 27.47 -169.99 -4.67 15.37 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 25 C -0.19 -2.50 9.93 -39.29 -0.39 -2.89 16 26 C 0.52 4.37 7.45 -10.99 -0.08 4.29 16 27 N -0.85 -2.81 8.84 31.22 0.28 -2.54 16 28 O -0.51 -7.16 17.34 -14.31 -0.25 -7.41 16 29 H 0.08 0.13 7.93 -51.93 -0.41 -0.29 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.40 6.91 -51.93 -0.36 0.04 16 32 H 0.13 0.75 5.42 -52.49 -0.28 0.46 16 33 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.13 1.30 6.29 -52.49 -0.33 0.97 16 35 H 0.07 0.91 7.66 -51.93 -0.40 0.51 16 36 H 0.08 0.96 7.66 -51.93 -0.40 0.56 16 37 H 0.03 0.59 7.20 -51.93 -0.37 0.21 16 38 H 0.04 0.69 7.57 -51.93 -0.39 0.30 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 40 H 0.14 1.95 8.06 -52.48 -0.42 1.52 16 41 H 0.40 -0.08 8.61 -40.82 -0.35 -0.43 16 42 H 0.41 1.05 8.93 -40.82 -0.36 0.69 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -36.57 363.18 -6.12 -42.69 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.26 Total: -1.56 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.68 Total: -8.05 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 1.83 Total: -38.00 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.81 Total: -15.92 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.57 -6.12 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134372583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.454 kcal (2) G-P(sol) polarization free energy of solvation -36.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds