Wall clock time and date at job start Tue Mar 31 2020 13:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46976 * 2 1 4 4 O 1.42904 * 109.46828 * 240.00710 * 2 1 3 5 5 C 1.35902 * 116.99886 * 84.96635 * 4 2 1 6 6 C 1.38796 * 120.02875 * 354.57513 * 5 4 2 7 7 C 1.38152 * 120.05250 * 179.97438 * 6 5 4 8 8 C 1.38197 * 120.11182 * 0.02562 * 7 6 5 9 9 C 1.38756 * 120.05507 * 359.97438 * 8 7 6 10 10 O 1.35895 * 120.02987 * 180.02562 * 9 8 7 11 11 C 1.42908 * 116.99824 * 359.97438 * 10 9 8 12 12 C 1.52994 * 109.46973 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.47491 * 305.00226 * 12 11 10 14 14 C 1.47201 * 109.47316 * 64.99846 * 12 11 10 15 15 N 9.03539 * 96.15404 * 255.75094 * 2 1 3 16 16 C 1.53001 * 109.47010 * 185.00222 * 12 11 10 17 17 C 1.50707 * 109.46790 * 174.99920 * 16 12 11 18 18 H 1.07995 * 120.00223 * 359.97438 * 17 16 12 19 19 C 1.37881 * 119.99523 * 179.97438 * 17 16 12 20 20 N 1.31510 * 119.99569 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00026 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47403 * 89.99751 * 21 19 17 23 23 H 1.48498 * 109.47082 * 209.99592 * 21 19 17 24 24 H 1.48500 * 109.47358 * 329.99694 * 21 19 17 25 25 C 1.38612 * 120.02612 * 174.30198 * 5 4 2 26 26 C 1.50689 * 109.47519 * 120.00560 * 2 1 3 27 27 N 1.34784 * 120.00340 * 294.99986 * 26 2 1 28 28 O 1.21284 * 120.00427 * 114.99595 * 26 2 1 29 29 H 1.09001 * 109.46781 * 299.99310 * 1 2 3 30 30 H 1.08996 * 109.46951 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47010 * 59.98970 * 1 2 3 32 32 H 1.08002 * 119.96853 * 359.97438 * 6 5 4 33 33 H 1.08003 * 119.94710 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.97396 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.47072 * 300.00331 * 11 10 9 36 36 H 1.08999 * 109.46763 * 59.99911 * 11 10 9 37 37 H 1.08998 * 109.46912 * 294.99389 * 16 12 11 38 38 H 1.08996 * 109.47282 * 55.00229 * 16 12 11 39 39 H 0.97000 * 119.99779 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.05109 * 0.02562 * 25 5 4 41 41 H 0.97006 * 119.99242 * 359.97438 * 27 26 2 42 42 H 0.96993 * 119.99987 * 179.97438 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.1118 0.0627 -2.3044 6 6 1.6588 1.3745 -2.3272 7 6 1.7662 2.1235 -3.4830 8 6 2.3242 1.5689 -4.6192 9 6 2.7785 0.2580 -4.6015 10 8 3.3276 -0.2867 -5.7189 11 6 3.4050 0.5477 -6.8765 12 6 4.0463 -0.2327 -8.0256 13 1 5.0126 -0.6226 -7.7054 14 6 3.1690 -1.3507 -8.4094 15 7 2.4986 -2.2111 -8.7070 16 6 4.2434 0.6960 -9.2254 17 6 4.9854 -0.0382 -10.3124 18 1 5.2867 -1.0643 -10.1624 19 6 5.2796 0.6003 -11.4986 20 7 5.9275 -0.0402 -12.4469 21 14 4.7591 2.3755 -11.7578 22 1 5.8389 3.2814 -11.2900 23 1 4.5062 2.6113 -13.2020 24 1 3.5184 2.6451 -10.9875 25 6 2.6769 -0.4940 -3.4410 26 6 2.0324 -0.7105 1.2303 27 7 1.7921 -0.1944 2.4520 28 8 2.6530 -1.7468 1.1213 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5140 -0.8899 32 1 1.2220 1.8099 -1.4406 33 1 1.4136 3.1442 -3.4988 34 1 2.4075 2.1566 -5.5215 35 1 2.4021 0.8614 -7.1660 36 1 4.0097 1.4262 -6.6514 37 1 3.2713 1.0155 -9.6011 38 1 4.8192 1.5691 -8.9184 39 1 6.1348 0.4091 -13.2812 40 1 3.0336 -1.5133 -3.4240 41 1 1.2959 0.6346 2.5392 42 1 2.1151 -0.6519 3.2438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134372583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:35 Heat of formation + Delta-G solvation = -92.404063 kcal Electronic energy + Delta-G solvation = -25046.003126 eV Core-core repulsion = 21183.817460 eV Total energy + Delta-G solvation = -3862.185666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75468 -40.87224 -39.77462 -38.32537 -37.21259 -35.65249 -35.04092 -33.97328 -32.81109 -31.25622 -30.37988 -29.27011 -26.04070 -25.43232 -23.89634 -23.28757 -22.91723 -21.34316 -19.84270 -18.97451 -18.81999 -18.67049 -17.98136 -17.40881 -16.94904 -16.78869 -16.60407 -16.39730 -16.11461 -15.71951 -15.35931 -15.17232 -14.90560 -14.69040 -14.50581 -14.39004 -14.07885 -13.81901 -13.62618 -13.43225 -13.21524 -13.05020 -12.90507 -12.74662 -12.34258 -12.21479 -12.13364 -11.90809 -11.77874 -11.64808 -11.59902 -11.33343 -11.00037 -10.76287 -10.72591 -9.51797 -9.06765 -8.24082 -6.31367 0.41422 0.44962 1.45137 1.45175 1.48577 1.56721 1.58725 1.88538 1.96399 2.27238 2.42630 2.79391 2.82259 3.07572 3.15645 3.67006 3.81331 3.83292 3.90602 3.94570 4.15421 4.17821 4.19722 4.29054 4.45860 4.49001 4.60571 4.65039 4.69304 4.71158 4.92115 5.15297 5.16559 5.27904 5.32709 5.38567 5.50362 5.57007 5.62245 5.81081 6.23037 6.26042 6.41812 6.49200 6.69810 6.78363 7.24436 7.32927 8.92884 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028342 B = 0.002175 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.691270 B =12873.030928 C =13331.661235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.059 3.941 3 H 0.135 0.865 4 O -0.317 6.317 5 C 0.156 3.844 6 C -0.242 4.242 7 C -0.032 4.032 8 C -0.247 4.247 9 C 0.158 3.842 10 O -0.334 6.334 11 C 0.071 3.929 12 C 0.023 3.977 13 H 0.122 0.878 14 C 0.250 3.750 15 N -0.504 5.504 16 C 0.002 3.998 17 C -0.536 4.536 18 H 0.026 0.974 19 C 0.000 4.000 20 N -0.954 5.954 21 Si 0.952 3.048 22 H -0.255 1.255 23 H -0.297 1.297 24 H -0.230 1.230 25 C -0.220 4.220 26 C 0.517 3.483 27 N -0.822 5.822 28 O -0.584 6.584 29 H 0.117 0.883 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.265 0.735 40 H 0.113 0.887 41 H 0.423 0.577 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.087 15.238 32.765 38.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 H 0.152 0.848 4 O -0.231 6.231 5 C 0.111 3.889 6 C -0.260 4.260 7 C -0.050 4.050 8 C -0.265 4.265 9 C 0.112 3.888 10 O -0.248 6.248 11 C -0.005 4.005 12 C 0.001 3.999 13 H 0.140 0.860 14 C -0.066 4.066 15 N -0.181 5.181 16 C -0.037 4.037 17 C -0.574 4.574 18 H 0.044 0.956 19 C -0.196 4.196 20 N -0.595 5.595 21 Si 0.774 3.226 22 H -0.179 1.179 23 H -0.224 1.224 24 H -0.153 1.153 25 C -0.240 4.240 26 C 0.301 3.699 27 N -0.389 5.389 28 O -0.463 6.463 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.183 0.817 33 H 0.185 0.815 34 H 0.171 0.829 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.131 0.869 41 H 0.256 0.744 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -13.543 12.908 31.911 36.991 hybrid contribution 0.485 0.194 -0.545 0.755 sum -13.058 13.101 31.365 36.414 Atomic orbital electron populations 1.22386 0.90311 1.04038 1.06242 1.22539 0.97405 0.97966 0.82123 0.84806 1.86172 1.81469 1.38599 1.16831 1.18631 0.94159 0.90957 0.85188 1.21481 1.09605 0.92918 1.02045 1.21170 0.92980 1.00526 0.90287 1.21567 1.08157 0.94270 1.02555 1.18733 0.92191 0.92356 0.85505 1.86064 1.76533 1.42866 1.19378 1.23067 1.02900 0.93365 0.81149 1.19107 0.95940 0.89199 0.95606 0.86016 1.29318 0.92721 0.93820 0.90788 1.80788 1.13049 1.12917 1.11357 1.19564 0.98198 0.95379 0.90531 1.21336 1.36587 0.99084 1.00351 0.95560 1.26108 0.94387 1.03868 0.95258 1.70098 1.42315 1.39913 1.07145 0.85638 0.81024 0.78476 0.77425 1.17949 1.22406 1.15258 1.19528 1.11185 1.01843 0.91438 1.20525 0.78589 0.84525 0.86277 1.43486 1.59234 1.29755 1.06394 1.90802 1.42153 1.25937 1.87411 0.86416 0.92632 0.89548 0.81689 0.81472 0.82901 0.89748 0.86126 0.94403 0.90773 0.92609 0.86888 0.74411 0.75332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 9.12 71.98 0.66 -0.50 16 2 C 0.06 0.73 2.63 29.85 0.08 0.81 16 3 H 0.13 0.72 6.31 -2.38 -0.02 0.70 16 4 O -0.32 -7.53 9.34 -73.46 -0.69 -8.21 16 5 C 0.16 3.52 6.60 22.49 0.15 3.66 16 6 C -0.24 -3.44 8.24 22.38 0.18 -3.26 16 7 C -0.03 -0.43 10.04 22.24 0.22 -0.21 16 8 C -0.25 -4.63 9.04 22.38 0.20 -4.43 16 9 C 0.16 4.13 6.68 22.49 0.15 4.28 16 10 O -0.33 -9.91 9.87 -92.37 -0.91 -10.83 16 11 C 0.07 1.77 4.09 71.98 0.29 2.06 16 12 C 0.02 0.78 2.45 -12.60 -0.03 0.75 16 13 H 0.12 4.09 8.14 -2.38 -0.02 4.07 16 14 C 0.25 10.57 13.69 89.50 1.23 11.80 16 15 N -0.50 -23.79 18.50 19.94 0.37 -23.42 16 16 C 0.00 0.07 3.49 29.85 0.10 0.17 16 17 C -0.54 -28.64 9.15 25.60 0.23 -28.41 16 18 H 0.03 1.61 7.84 -2.91 -0.02 1.59 16 19 C 0.00 0.02 5.47 84.66 0.46 0.49 16 20 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 21 Si 0.95 40.02 27.47 68.60 1.88 41.90 16 22 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.30 -12.97 7.11 99.48 0.71 -12.27 16 24 H -0.23 -8.35 6.54 99.48 0.65 -7.70 16 25 C -0.22 -6.19 9.93 22.46 0.22 -5.97 16 26 C 0.52 8.18 7.45 87.65 0.65 8.84 16 27 N -0.82 -3.44 8.84 -173.53 -1.53 -4.97 16 28 O -0.58 -17.00 17.34 15.95 0.28 -16.72 16 29 H 0.12 -0.19 7.93 -2.39 -0.02 -0.21 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.53 6.91 -2.39 -0.02 0.52 16 32 H 0.17 0.98 5.42 -2.91 -0.02 0.96 16 33 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.15 2.21 6.29 -2.91 -0.02 2.19 16 35 H 0.08 1.88 7.66 -2.39 -0.02 1.86 16 36 H 0.12 2.17 7.66 -2.39 -0.02 2.15 16 37 H 0.04 1.42 7.20 -2.39 -0.02 1.41 16 38 H 0.07 2.41 7.57 -2.39 -0.02 2.39 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.11 3.58 8.06 -2.91 -0.02 3.56 16 41 H 0.42 -1.85 8.61 -92.70 -0.80 -2.65 16 42 H 0.41 1.34 8.93 -92.71 -0.83 0.51 16 Total: -1.00 -88.69 363.18 3.91 -84.78 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -0.60 Total: 5.96 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.81 Total: -9.90 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -0.87 Total: -86.97 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.32 Total: -35.76 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.88 Total: 41.90 kcal Total: -88.69 3.91 -84.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134372583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.625 kcal (2) G-P(sol) polarization free energy of solvation -88.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds