Wall clock time and date at job start Tue Mar 31 2020 13:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47514 * 2 1 4 4 O 1.42903 * 109.46945 * 120.00160 * 2 1 3 5 5 C 1.35902 * 116.99905 * 275.14156 * 4 2 1 6 6 C 1.38796 * 120.02445 * 5.46243 * 5 4 2 7 7 C 1.38153 * 120.04943 * 180.02562 * 6 5 4 8 8 C 1.38202 * 120.11248 * 359.72055 * 7 6 5 9 9 C 1.38747 * 120.04985 * 0.56063 * 8 7 6 10 10 O 1.35903 * 120.02407 * 179.71757 * 9 8 7 11 11 C 1.42900 * 117.00096 * 359.72427 * 10 9 8 12 12 C 1.52999 * 109.47048 * 179.97438 * 11 10 9 13 13 H 1.08991 * 109.47177 * 305.00075 * 12 11 10 14 14 C 1.47201 * 109.46945 * 65.00371 * 12 11 10 15 15 N 8.97395 * 123.75513 * 96.12267 * 2 1 3 16 16 C 1.53005 * 109.46866 * 184.99892 * 12 11 10 17 17 C 1.50699 * 109.46664 * 175.00537 * 16 12 11 18 18 H 1.08000 * 120.00432 * 359.97438 * 17 16 12 19 19 C 1.37877 * 119.99729 * 179.72663 * 17 16 12 20 20 N 1.31520 * 120.00187 * 180.26803 * 19 17 16 21 21 Si 1.86799 * 120.00013 * 0.26990 * 19 17 16 22 22 H 1.48507 * 109.47045 * 90.00148 * 21 19 17 23 23 H 1.48498 * 109.47436 * 209.99889 * 21 19 17 24 24 H 1.48502 * 109.47435 * 330.00294 * 21 19 17 25 25 C 1.38610 * 120.02719 * 185.49135 * 5 4 2 26 26 C 1.50701 * 109.47479 * 239.99594 * 2 1 3 27 27 N 1.34776 * 119.99552 * 65.00267 * 26 2 1 28 28 O 1.21277 * 120.00326 * 245.00399 * 26 2 1 29 29 H 1.08998 * 109.46758 * 300.00215 * 1 2 3 30 30 H 1.09002 * 109.46898 * 60.00280 * 1 2 3 31 31 H 1.08995 * 109.47514 * 179.97438 * 1 2 3 32 32 H 1.07996 * 119.97495 * 0.04395 * 6 5 4 33 33 H 1.07999 * 119.94283 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.97327 * 180.29883 * 8 7 6 35 35 H 1.09003 * 109.47409 * 59.99875 * 11 10 9 36 36 H 1.09001 * 109.46818 * 299.99745 * 11 10 9 37 37 H 1.08994 * 109.46833 * 55.00212 * 16 12 11 38 38 H 1.09001 * 109.47262 * 294.99891 * 16 12 11 39 39 H 0.96998 * 119.99970 * 179.97438 * 20 19 17 40 40 H 1.08004 * 120.05520 * 359.94947 * 25 5 4 41 41 H 0.97007 * 120.00471 * 0.02562 * 27 26 2 42 42 H 0.96997 * 120.00302 * 180.02562 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1096 0.0618 2.3049 6 6 1.6539 1.3726 2.3285 7 6 1.7591 2.1209 3.4850 8 6 2.3129 1.5649 4.6226 9 6 2.7752 0.2569 4.6023 10 8 3.3250 -0.2875 5.7196 11 6 3.4005 0.5462 6.8778 12 6 4.0429 -0.2338 8.0266 13 1 3.4899 -1.1583 8.1920 14 6 5.4387 -0.5515 7.6838 15 7 6.5163 -0.7958 7.4186 16 6 4.0107 0.6145 9.2996 17 6 4.5308 -0.1977 10.4576 18 1 4.8516 -1.2171 10.3014 19 6 4.6017 0.3622 11.7156 20 7 5.0604 -0.3449 12.7252 21 14 4.0461 2.1250 11.9860 22 1 2.6019 2.1414 12.3314 23 1 4.8275 2.7255 13.0968 24 1 4.2671 2.9097 10.7447 25 6 2.6708 -0.4963 3.4429 26 6 2.0324 -0.7105 -1.2304 27 7 1.7920 -0.1942 -2.4519 28 8 2.6530 -1.7467 -1.1214 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2163 1.8078 1.4422 33 1 1.4035 3.1406 3.5016 34 1 2.3897 2.1504 5.5269 35 1 2.3969 0.8580 7.1672 36 1 4.0037 1.4259 6.6534 37 1 2.9859 0.9241 9.5041 38 1 4.6367 1.4965 9.1644 39 1 5.1107 0.0491 13.6101 40 1 3.0257 -1.5162 3.4265 41 1 1.2959 0.6348 -2.5392 42 1 2.1150 -0.6516 -3.2440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134372605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:40 Heat of formation + Delta-G solvation = -65.715731 kcal Electronic energy + Delta-G solvation = -25045.043449 eV Core-core repulsion = 21184.015076 eV Total energy + Delta-G solvation = -3861.028374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01629 -40.02173 -38.93189 -37.02214 -36.00356 -34.45601 -33.87069 -32.31277 -32.09437 -30.39800 -29.55869 -27.72101 -25.42356 -24.20807 -23.04040 -22.08556 -21.58699 -20.67745 -19.04875 -18.27914 -17.36377 -17.22234 -17.04420 -16.58058 -16.15671 -16.11762 -15.63140 -15.33337 -14.85062 -14.72777 -14.34510 -14.06232 -13.74789 -13.52650 -13.44163 -13.10629 -13.04163 -12.57715 -12.48012 -12.34069 -12.24543 -11.92043 -11.64385 -11.48592 -11.33850 -11.11204 -10.81661 -10.72135 -10.49244 -10.31059 -10.26268 -10.17000 -9.89309 -9.41818 -8.67620 -8.64908 -8.26410 -6.15853 -4.17822 1.21588 1.25655 2.06105 2.21891 3.03491 3.21463 3.29665 3.30958 3.43318 3.58321 3.59931 3.62959 4.11646 4.23885 4.32606 4.35636 4.55821 4.58963 4.78715 4.83503 4.94936 5.02459 5.07335 5.17670 5.19242 5.31397 5.36382 5.50611 5.55646 5.75756 5.94235 6.04459 6.10393 6.14436 6.19913 6.26138 6.36036 6.67931 6.78040 6.98716 7.08710 7.36527 7.55149 7.69428 8.32285 8.37880 8.87359 9.42467 10.96969 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.002190 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.190012 B =12784.644703 C =13423.007453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 H 0.102 0.898 4 O -0.283 6.283 5 C 0.164 3.836 6 C -0.255 4.255 7 C -0.040 4.040 8 C -0.243 4.243 9 C 0.180 3.820 10 O -0.308 6.308 11 C 0.063 3.937 12 C 0.022 3.978 13 H 0.120 0.880 14 C 0.240 3.760 15 N -0.458 5.458 16 C -0.002 4.002 17 C -0.531 4.531 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.893 5.893 21 Si 0.877 3.123 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.264 1.264 25 C -0.185 4.185 26 C 0.521 3.479 27 N -0.851 5.851 28 O -0.514 6.514 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.028 0.972 39 H 0.266 0.734 40 H 0.140 0.860 41 H 0.402 0.598 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.887 8.621 -28.823 33.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.006 3.994 3 H 0.119 0.881 4 O -0.196 6.196 5 C 0.118 3.882 6 C -0.274 4.274 7 C -0.058 4.058 8 C -0.262 4.262 9 C 0.133 3.867 10 O -0.221 6.221 11 C -0.013 4.013 12 C 0.000 4.000 13 H 0.138 0.862 14 C -0.078 4.078 15 N -0.134 5.134 16 C -0.040 4.040 17 C -0.568 4.568 18 H 0.095 0.905 19 C -0.131 4.131 20 N -0.531 5.531 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.189 1.189 25 C -0.204 4.204 26 C 0.304 3.696 27 N -0.417 5.417 28 O -0.387 6.387 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.158 0.842 41 H 0.231 0.769 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -12.685 7.163 -28.723 32.206 hybrid contribution -0.893 1.658 0.099 1.886 sum -13.578 8.821 -28.624 32.886 Atomic orbital electron populations 1.22354 0.92358 1.04657 1.04074 1.22151 0.95917 0.97130 0.84235 0.88053 1.86203 1.80982 1.36812 1.15579 1.18511 0.94117 0.89841 0.85708 1.21074 1.11246 0.94538 1.00498 1.20676 0.94770 0.98964 0.91383 1.21283 1.08476 0.95552 1.00886 1.18582 0.90647 0.91086 0.86380 1.86138 1.75622 1.41674 1.18629 1.23134 1.01799 0.93553 0.82793 1.19018 0.84154 1.02420 0.94383 0.86246 1.28761 0.94754 0.92729 0.91555 1.81050 1.12431 1.09323 1.10582 1.19632 0.98445 0.95553 0.90402 1.20952 1.43887 1.00758 0.91233 0.90550 1.24983 0.94424 0.97728 0.95915 1.69899 1.45536 1.37053 1.00610 0.86821 0.79089 0.85279 0.78386 1.19918 1.21208 1.18863 1.19454 1.08986 1.02333 0.89666 1.20143 0.79452 0.85296 0.84710 1.43690 1.60754 1.29521 1.07769 1.90826 1.38682 1.22873 1.86361 0.90013 0.90410 0.90518 0.85479 0.85442 0.84788 0.89700 0.91169 0.94439 0.95348 0.92435 0.84189 0.76939 0.76019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 9.12 37.16 0.34 -0.49 16 2 C 0.07 0.48 2.64 -27.88 -0.07 0.41 16 3 H 0.10 0.50 6.32 -51.93 -0.33 0.17 16 4 O -0.28 -3.34 9.34 -39.29 -0.37 -3.71 16 5 C 0.16 1.91 6.60 -39.24 -0.26 1.65 16 6 C -0.25 -2.30 8.24 -39.41 -0.32 -2.63 16 7 C -0.04 -0.36 10.04 -39.63 -0.40 -0.76 16 8 C -0.24 -2.70 9.04 -39.41 -0.36 -3.06 16 9 C 0.18 2.42 6.68 -39.24 -0.26 2.16 16 10 O -0.31 -4.61 9.87 -19.43 -0.19 -4.81 16 11 C 0.06 0.87 4.09 37.16 0.15 1.02 16 12 C 0.02 0.38 2.45 -93.40 -0.23 0.15 16 13 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 14 C 0.24 4.98 13.71 -20.75 -0.28 4.70 16 15 N -0.46 -10.49 18.54 42.17 0.78 -9.71 16 16 C 0.00 -0.04 3.49 -27.88 -0.10 -0.14 16 17 C -0.53 -13.99 9.15 -34.44 -0.32 -14.31 16 18 H 0.08 2.23 7.84 -52.49 -0.41 1.81 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 21 Si 0.88 20.03 27.47 -169.99 -4.67 15.36 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 25 C -0.19 -2.50 9.93 -39.29 -0.39 -2.89 16 26 C 0.52 4.41 7.45 -10.98 -0.08 4.33 16 27 N -0.85 -2.89 8.84 31.22 0.28 -2.61 16 28 O -0.51 -7.22 17.34 -14.30 -0.25 -7.47 16 29 H 0.08 0.38 6.90 -51.93 -0.36 0.02 16 30 H 0.08 0.12 7.93 -51.93 -0.41 -0.30 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.13 0.75 5.42 -52.49 -0.28 0.46 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 1.30 6.29 -52.49 -0.33 0.97 16 35 H 0.08 0.95 7.65 -51.93 -0.40 0.55 16 36 H 0.07 0.91 7.67 -51.93 -0.40 0.51 16 37 H 0.04 0.70 7.58 -51.93 -0.39 0.30 16 38 H 0.03 0.59 7.19 -51.93 -0.37 0.21 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.14 1.95 8.06 -52.48 -0.42 1.52 16 41 H 0.40 -0.05 8.61 -40.82 -0.35 -0.40 16 42 H 0.41 1.09 8.93 -40.82 -0.36 0.73 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -36.64 363.21 -6.11 -42.75 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.26 Total: -1.53 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -2.68 Total: -7.95 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 1.83 Total: -38.12 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.81 Total: -15.98 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.64 -6.11 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134372605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.967 kcal (2) G-P(sol) polarization free energy of solvation -36.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds