Wall clock time and date at job start Tue Mar 31 2020 13:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47514 * 2 1 4 4 O 1.42903 * 109.46945 * 120.00160 * 2 1 3 5 5 C 1.35902 * 116.99905 * 275.14156 * 4 2 1 6 6 C 1.38796 * 120.02445 * 5.46243 * 5 4 2 7 7 C 1.38153 * 120.04943 * 180.02562 * 6 5 4 8 8 C 1.38202 * 120.11248 * 359.72055 * 7 6 5 9 9 C 1.38747 * 120.04985 * 0.56063 * 8 7 6 10 10 O 1.35903 * 120.02407 * 179.71757 * 9 8 7 11 11 C 1.42900 * 117.00096 * 359.72427 * 10 9 8 12 12 C 1.52999 * 109.47048 * 179.97438 * 11 10 9 13 13 H 1.08991 * 109.47177 * 305.00075 * 12 11 10 14 14 C 1.47201 * 109.46945 * 65.00371 * 12 11 10 15 15 N 8.97395 * 123.75513 * 96.12267 * 2 1 3 16 16 C 1.53005 * 109.46866 * 184.99892 * 12 11 10 17 17 C 1.50699 * 109.46664 * 175.00537 * 16 12 11 18 18 H 1.08000 * 120.00432 * 359.97438 * 17 16 12 19 19 C 1.37877 * 119.99729 * 179.72663 * 17 16 12 20 20 N 1.31520 * 120.00187 * 180.26803 * 19 17 16 21 21 Si 1.86799 * 120.00013 * 0.26990 * 19 17 16 22 22 H 1.48507 * 109.47045 * 90.00148 * 21 19 17 23 23 H 1.48498 * 109.47436 * 209.99889 * 21 19 17 24 24 H 1.48502 * 109.47435 * 330.00294 * 21 19 17 25 25 C 1.38610 * 120.02719 * 185.49135 * 5 4 2 26 26 C 1.50701 * 109.47479 * 239.99594 * 2 1 3 27 27 N 1.34776 * 119.99552 * 65.00267 * 26 2 1 28 28 O 1.21277 * 120.00326 * 245.00399 * 26 2 1 29 29 H 1.08998 * 109.46758 * 300.00215 * 1 2 3 30 30 H 1.09002 * 109.46898 * 60.00280 * 1 2 3 31 31 H 1.08995 * 109.47514 * 179.97438 * 1 2 3 32 32 H 1.07996 * 119.97495 * 0.04395 * 6 5 4 33 33 H 1.07999 * 119.94283 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.97327 * 180.29883 * 8 7 6 35 35 H 1.09003 * 109.47409 * 59.99875 * 11 10 9 36 36 H 1.09001 * 109.46818 * 299.99745 * 11 10 9 37 37 H 1.08994 * 109.46833 * 55.00212 * 16 12 11 38 38 H 1.09001 * 109.47262 * 294.99891 * 16 12 11 39 39 H 0.96998 * 119.99970 * 179.97438 * 20 19 17 40 40 H 1.08004 * 120.05520 * 359.94947 * 25 5 4 41 41 H 0.97007 * 120.00471 * 0.02562 * 27 26 2 42 42 H 0.96997 * 120.00302 * 180.02562 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1096 0.0618 2.3049 6 6 1.6539 1.3726 2.3285 7 6 1.7591 2.1209 3.4850 8 6 2.3129 1.5649 4.6226 9 6 2.7752 0.2569 4.6023 10 8 3.3250 -0.2875 5.7196 11 6 3.4005 0.5462 6.8778 12 6 4.0429 -0.2338 8.0266 13 1 3.4899 -1.1583 8.1920 14 6 5.4387 -0.5515 7.6838 15 7 6.5163 -0.7958 7.4186 16 6 4.0107 0.6145 9.2996 17 6 4.5308 -0.1977 10.4576 18 1 4.8516 -1.2171 10.3014 19 6 4.6017 0.3622 11.7156 20 7 5.0604 -0.3449 12.7252 21 14 4.0461 2.1250 11.9860 22 1 2.6019 2.1414 12.3314 23 1 4.8275 2.7255 13.0968 24 1 4.2671 2.9097 10.7447 25 6 2.6708 -0.4963 3.4429 26 6 2.0324 -0.7105 -1.2304 27 7 1.7920 -0.1942 -2.4519 28 8 2.6530 -1.7467 -1.1214 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2163 1.8078 1.4422 33 1 1.4035 3.1406 3.5016 34 1 2.3897 2.1504 5.5269 35 1 2.3969 0.8580 7.1672 36 1 4.0037 1.4259 6.6534 37 1 2.9859 0.9241 9.5041 38 1 4.6367 1.4965 9.1644 39 1 5.1107 0.0491 13.6101 40 1 3.0257 -1.5162 3.4265 41 1 1.2959 0.6348 -2.5392 42 1 2.1150 -0.6516 -3.2440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134372605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:39 Heat of formation + Delta-G solvation = -93.071667 kcal Electronic energy + Delta-G solvation = -25046.229692 eV Core-core repulsion = 21184.015076 eV Total energy + Delta-G solvation = -3862.214616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75534 -40.87289 -39.77523 -38.27291 -37.18379 -35.61831 -35.04716 -33.96468 -32.80901 -31.25399 -30.37991 -29.26888 -26.03673 -25.43150 -23.89617 -23.28918 -22.91860 -21.34652 -19.84269 -18.97345 -18.82278 -18.67462 -17.98450 -17.38310 -17.02607 -16.82389 -16.45942 -16.39107 -16.18922 -15.66005 -15.45878 -15.14474 -14.84164 -14.69972 -14.50089 -14.37758 -14.09446 -13.81734 -13.57988 -13.39058 -13.24340 -13.10449 -12.87216 -12.67239 -12.38042 -12.25531 -12.08500 -11.90695 -11.75847 -11.66869 -11.59442 -11.32960 -11.00382 -10.76991 -10.72363 -9.51735 -9.06736 -8.23922 -6.31232 0.41392 0.45061 1.44706 1.45264 1.48718 1.56477 1.58800 1.85466 1.93058 2.26914 2.42749 2.79432 2.82088 3.06875 3.15448 3.66915 3.81400 3.83273 3.90846 3.94519 4.15466 4.17904 4.19703 4.29065 4.45900 4.48888 4.60757 4.65791 4.70796 4.71332 4.92254 5.16504 5.16810 5.28027 5.32779 5.38618 5.50403 5.57037 5.62381 5.80391 6.23063 6.25891 6.41658 6.49144 6.69623 6.78459 7.23865 7.33088 8.93009 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.002190 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.190012 B =12784.644703 C =13423.007453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.059 3.941 3 H 0.133 0.867 4 O -0.317 6.317 5 C 0.156 3.844 6 C -0.242 4.242 7 C -0.032 4.032 8 C -0.247 4.247 9 C 0.158 3.842 10 O -0.334 6.334 11 C 0.070 3.930 12 C 0.024 3.976 13 H 0.123 0.877 14 C 0.249 3.751 15 N -0.506 5.506 16 C 0.002 3.998 17 C -0.535 4.535 18 H 0.026 0.974 19 C 0.000 4.000 20 N -0.955 5.955 21 Si 0.952 3.048 22 H -0.255 1.255 23 H -0.298 1.298 24 H -0.230 1.230 25 C -0.220 4.220 26 C 0.516 3.484 27 N -0.822 5.822 28 O -0.585 6.585 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.056 0.944 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.265 0.735 40 H 0.113 0.887 41 H 0.423 0.577 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.124 13.483 -31.147 38.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 H 0.150 0.850 4 O -0.231 6.231 5 C 0.111 3.889 6 C -0.260 4.260 7 C -0.050 4.050 8 C -0.265 4.265 9 C 0.112 3.888 10 O -0.248 6.248 11 C -0.005 4.005 12 C 0.003 3.997 13 H 0.141 0.859 14 C -0.067 4.067 15 N -0.183 5.183 16 C -0.037 4.037 17 C -0.573 4.573 18 H 0.045 0.955 19 C -0.196 4.196 20 N -0.595 5.595 21 Si 0.774 3.226 22 H -0.179 1.179 23 H -0.224 1.224 24 H -0.153 1.153 25 C -0.240 4.240 26 C 0.300 3.700 27 N -0.389 5.389 28 O -0.464 6.464 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.075 0.925 32 H 0.183 0.817 33 H 0.185 0.815 34 H 0.171 0.829 35 H 0.140 0.860 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.131 0.869 41 H 0.256 0.744 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -15.971 12.072 -31.133 37.014 hybrid contribution 0.100 0.051 0.669 0.679 sum -15.871 12.124 -30.463 36.426 Atomic orbital electron populations 1.22383 0.90082 1.04135 1.06286 1.22543 0.97567 0.97851 0.82097 0.84992 1.86170 1.81481 1.38636 1.16782 1.18630 0.94192 0.90964 0.85147 1.21483 1.09571 0.92950 1.02045 1.21172 0.93044 1.00471 0.90283 1.21567 1.08066 0.94343 1.02565 1.18732 0.92044 0.92407 0.85599 1.86064 1.76594 1.42713 1.19473 1.23071 1.03506 0.92556 0.81359 1.19114 0.82411 1.02898 0.95314 0.85917 1.29588 0.95427 0.91486 0.90221 1.81036 1.14066 1.10846 1.12353 1.19567 1.00092 0.95005 0.89009 1.21336 1.42993 0.99454 0.93557 0.95545 1.26109 0.94669 1.03357 0.95486 1.70101 1.48248 1.39797 1.01339 0.85641 0.79141 0.78631 0.79161 1.17910 1.22436 1.15268 1.19526 1.11195 1.01836 0.91437 1.20545 0.78582 0.84532 0.86305 1.43487 1.59239 1.29751 1.06403 1.90801 1.42151 1.25986 1.87416 0.89381 0.86491 0.92488 0.81691 0.81474 0.82889 0.86033 0.89812 0.90701 0.94444 0.92614 0.86892 0.74404 0.75352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 9.12 71.98 0.66 -0.42 16 2 C 0.06 0.73 2.64 29.85 0.08 0.81 16 3 H 0.13 0.76 6.32 -2.39 -0.02 0.74 16 4 O -0.32 -7.53 9.34 -73.45 -0.69 -8.21 16 5 C 0.16 3.52 6.60 22.49 0.15 3.66 16 6 C -0.24 -3.44 8.24 22.38 0.18 -3.25 16 7 C -0.03 -0.43 10.04 22.24 0.22 -0.21 16 8 C -0.25 -4.62 9.04 22.38 0.20 -4.42 16 9 C 0.16 4.13 6.68 22.49 0.15 4.28 16 10 O -0.33 -9.90 9.87 -92.46 -0.91 -10.82 16 11 C 0.07 1.76 4.09 71.98 0.29 2.06 16 12 C 0.02 0.82 2.45 -12.60 -0.03 0.79 16 13 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 14 C 0.25 10.56 13.71 89.44 1.23 11.79 16 15 N -0.51 -24.00 18.54 20.01 0.37 -23.63 16 16 C 0.00 0.07 3.49 29.85 0.10 0.17 16 17 C -0.54 -28.60 9.15 25.60 0.23 -28.36 16 18 H 0.03 1.62 7.84 -2.91 -0.02 1.59 16 19 C 0.00 0.02 5.47 84.65 0.46 0.49 16 20 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 21 Si 0.95 39.98 27.47 68.60 1.88 41.86 16 22 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.30 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.23 -8.35 6.54 99.48 0.65 -7.70 16 25 C -0.22 -6.19 9.93 22.46 0.22 -5.97 16 26 C 0.52 8.30 7.45 87.66 0.65 8.95 16 27 N -0.82 -3.64 8.84 -173.53 -1.53 -5.17 16 28 O -0.58 -17.20 17.34 15.97 0.28 -16.93 16 29 H 0.09 0.48 6.90 -2.39 -0.02 0.46 16 30 H 0.12 -0.22 7.93 -2.39 -0.02 -0.24 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.17 0.98 5.42 -2.91 -0.02 0.96 16 33 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.15 2.20 6.29 -2.91 -0.02 2.18 16 35 H 0.12 2.16 7.65 -2.39 -0.02 2.14 16 36 H 0.08 1.87 7.67 -2.39 -0.02 1.85 16 37 H 0.07 2.42 7.58 -2.39 -0.02 2.40 16 38 H 0.04 1.41 7.19 -2.39 -0.02 1.39 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.11 3.58 8.06 -2.91 -0.02 3.56 16 41 H 0.42 -1.77 8.61 -92.70 -0.80 -2.57 16 42 H 0.41 1.46 8.93 -92.71 -0.83 0.63 16 Total: -1.00 -88.92 363.21 3.91 -85.01 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -0.60 Total: 6.08 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 4.81 Total: -9.62 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -0.86 Total: -87.37 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.32 Total: -35.96 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 1.88 Total: 41.86 kcal Total: -88.92 3.91 -85.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134372605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.064 kcal (2) G-P(sol) polarization free energy of solvation -88.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds