Wall clock time and date at job start Tue Mar 31 2020 13:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.47261 * 2 1 4 4 C 1.34652 * 116.99955 * 179.97438 * 3 2 1 5 5 O 1.21514 * 120.00082 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99546 * 179.97438 * 4 3 2 7 7 C 1.40156 * 119.99528 * 185.31817 * 6 4 3 8 8 C 1.38836 * 120.01847 * 33.26569 * 7 6 4 9 9 C 1.38092 * 119.98614 * 180.02562 * 8 7 6 10 10 C 1.38713 * 120.01609 * 0.02562 * 9 8 7 11 11 O 1.35977 * 119.98832 * 179.97438 * 10 9 8 12 12 C 1.42894 * 117.00281 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47347 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47252 * 55.00124 * 13 12 11 15 15 C 1.47202 * 109.47168 * 295.00502 * 13 12 11 16 16 N 9.27615 * 160.45739 * 339.54607 * 4 1 2 17 17 C 1.52994 * 109.47206 * 175.00323 * 13 12 11 18 18 C 1.50704 * 109.47319 * 185.00096 * 17 13 12 19 19 H 1.07999 * 119.99803 * 359.97438 * 18 17 13 20 20 C 1.37871 * 120.00356 * 179.97438 * 18 17 13 21 21 N 1.31521 * 120.00204 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00117 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47350 * 89.99806 * 22 20 18 24 24 H 1.48494 * 109.47271 * 210.00089 * 22 20 18 25 25 H 1.48506 * 109.46918 * 329.99934 * 22 20 18 26 26 C 1.38717 * 120.02501 * 0.24896 * 10 9 8 27 27 C 1.38091 * 120.01491 * 359.45621 * 26 10 9 28 28 H 1.08999 * 109.47358 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46936 * 300.00419 * 1 2 3 30 30 H 1.09004 * 109.46962 * 59.99744 * 1 2 3 31 31 H 1.09001 * 109.47177 * 240.00496 * 2 1 3 32 32 H 1.08995 * 109.46824 * 120.00184 * 2 1 3 33 33 H 0.96993 * 120.00328 * 5.31266 * 6 4 3 34 34 H 1.08001 * 120.00304 * 0.02562 * 8 7 6 35 35 H 1.08004 * 119.98701 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47311 * 300.00462 * 12 11 10 37 37 H 1.09004 * 109.46762 * 59.99707 * 12 11 10 38 38 H 1.09001 * 109.47533 * 304.99939 * 17 13 12 39 39 H 1.08994 * 109.47596 * 65.00277 * 17 13 12 40 40 H 0.96997 * 120.00131 * 179.97438 * 21 20 18 41 41 H 1.08003 * 119.98679 * 179.70029 * 26 10 9 42 42 H 1.08006 * 120.00450 * 180.24822 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3490 1.5453 0.0005 5 8 4.0892 0.5817 0.0015 6 7 3.8641 2.7908 0.0000 7 6 5.2488 2.9764 -0.1119 8 6 6.0085 2.0956 -0.8699 9 6 7.3729 2.2787 -0.9793 10 6 7.9844 3.3420 -0.3317 11 8 9.3280 3.5215 -0.4394 12 6 9.8911 4.6373 0.2533 13 6 11.4021 4.6749 0.0165 14 1 11.6019 4.6827 -1.0550 15 6 12.0235 3.4862 0.6228 16 7 12.5046 2.5678 1.0852 17 6 11.9869 5.9370 0.6535 18 6 13.4523 6.0374 0.3162 19 1 13.9198 5.2767 -0.2914 20 6 14.1961 7.1001 0.7832 21 7 15.4750 7.1874 0.4892 22 14 13.3877 8.4155 1.8348 23 1 13.4893 8.0361 3.2669 24 1 14.0737 9.7143 1.6169 25 1 11.9572 8.5417 1.4565 26 6 7.2267 4.2191 0.4305 27 6 5.8614 4.0406 0.5357 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.2765 3.5587 0.0771 34 1 5.5325 1.2674 -1.3739 35 1 7.9638 1.5938 -1.5693 36 1 9.4419 5.5590 -0.1167 37 1 9.6932 4.5398 1.3207 38 1 11.4649 6.8134 0.2693 39 1 11.8658 5.8875 1.7356 40 1 15.9982 7.9353 0.8175 41 1 7.7042 5.0440 0.9384 42 1 5.2711 4.7260 1.1259 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155007802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:42 Heat of formation + Delta-G solvation = -69.650855 kcal Electronic energy + Delta-G solvation = -24730.964032 eV Core-core repulsion = 20869.765019 eV Total energy + Delta-G solvation = -3861.199013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.22426 -40.10170 -38.42670 -36.92604 -36.21599 -34.81784 -33.84253 -32.20099 -32.01154 -31.20991 -29.05760 -27.62703 -24.62270 -24.03007 -22.78948 -22.57269 -21.58103 -21.14526 -19.33368 -18.24931 -17.73091 -17.28277 -17.08684 -16.95009 -16.54162 -15.81942 -15.25816 -14.93851 -14.46680 -14.44916 -14.16648 -13.78695 -13.52577 -13.43212 -13.35968 -13.14492 -12.89405 -12.67984 -12.49766 -12.37401 -12.20659 -12.10535 -11.73815 -11.47265 -11.24021 -11.14472 -11.00116 -10.90417 -10.75238 -10.39374 -10.17664 -10.12535 -9.93400 -9.42707 -9.16016 -8.68065 -7.89551 -6.16566 -4.18606 1.12036 1.18405 1.68864 2.41901 3.16692 3.22308 3.28216 3.30733 3.55970 3.60822 3.62674 3.70123 4.32027 4.46128 4.49144 4.55625 4.61713 4.74119 4.80558 4.97347 5.07024 5.14288 5.17443 5.25383 5.28039 5.31283 5.34087 5.45631 5.53675 5.67357 5.80753 5.90041 6.02613 6.07914 6.12238 6.21386 6.25456 6.64247 6.79776 6.93660 6.96831 7.38170 7.54752 7.87570 8.31581 8.37214 8.86470 9.41845 10.96265 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.032067 B = 0.002018 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.952848 B =13871.996433 C =14452.616549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.081 3.919 3 O -0.370 6.370 4 C 0.647 3.353 5 O -0.554 6.554 6 N -0.646 5.646 7 C 0.108 3.892 8 C -0.079 4.079 9 C -0.134 4.134 10 C 0.131 3.869 11 O -0.311 6.311 12 C 0.062 3.938 13 C 0.022 3.978 14 H 0.120 0.880 15 C 0.240 3.760 16 N -0.458 5.458 17 C -0.002 4.002 18 C -0.531 4.531 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.878 3.122 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.263 1.263 26 C -0.190 4.190 27 C -0.097 4.097 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.024 0.976 40 H 0.266 0.734 41 H 0.138 0.862 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.795 -6.663 -2.318 32.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.401 3.599 5 O -0.441 6.441 6 N -0.298 5.298 7 C 0.016 3.984 8 C -0.099 4.099 9 C -0.153 4.153 10 C 0.085 3.915 11 O -0.224 6.224 12 C -0.014 4.014 13 C 0.000 4.000 14 H 0.137 0.863 15 C -0.077 4.077 16 N -0.135 5.135 17 C -0.041 4.041 18 C -0.569 4.569 19 H 0.094 0.906 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.187 1.187 26 C -0.209 4.209 27 C -0.117 4.117 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.252 0.748 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.156 0.844 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -30.500 -8.618 -1.714 31.741 hybrid contribution -0.703 1.568 0.638 1.833 sum -31.204 -7.051 -1.076 32.008 Atomic orbital electron populations 1.21842 0.92344 1.03263 1.03616 1.23024 0.94923 0.78235 1.03113 1.86234 1.21601 1.33788 1.86809 1.18058 0.81365 0.84140 0.76380 1.91042 1.59522 1.39467 1.54119 1.41884 1.06299 1.06167 1.75495 1.17305 0.80869 0.99071 1.01141 1.20918 0.92905 0.99076 0.96955 1.20347 0.93862 0.98113 1.02975 1.19066 0.83121 0.94339 0.94991 1.86159 1.18273 1.48653 1.69300 1.23095 0.93254 0.88134 0.96899 1.19015 0.89027 0.89686 1.02245 0.86269 1.28730 0.92738 0.93258 0.93021 1.81000 1.09476 1.12905 1.10090 1.19632 0.97981 0.90231 0.96210 1.20956 0.91480 1.10133 1.34316 0.90568 1.24974 0.94659 0.97750 0.95600 1.69898 1.06649 1.31339 1.45232 0.86822 0.80132 0.81458 0.81153 1.20186 1.21133 1.18704 1.21127 0.93946 1.02086 1.03779 1.20582 0.94251 0.98135 0.98763 0.89802 0.91396 0.91384 0.90893 0.90906 0.74820 0.84285 0.84588 0.89835 0.91331 0.94028 0.95795 0.92432 0.84387 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 10.29 37.16 0.38 -0.19 16 2 C 0.08 0.52 6.19 37.16 0.23 0.75 16 3 O -0.37 -3.14 10.27 -40.36 -0.41 -3.55 16 4 C 0.65 6.76 8.49 54.06 0.46 7.22 16 5 O -0.55 -7.50 13.82 -19.28 -0.27 -7.76 16 6 N -0.65 -5.57 5.36 -14.23 -0.08 -5.65 16 7 C 0.11 1.13 6.28 -83.61 -0.53 0.61 16 8 C -0.08 -0.93 8.65 -39.41 -0.34 -1.27 16 9 C -0.13 -1.66 9.98 -39.46 -0.39 -2.05 16 10 C 0.13 1.70 6.69 -39.23 -0.26 1.44 16 11 O -0.31 -4.50 9.88 -19.67 -0.19 -4.69 16 12 C 0.06 0.84 4.09 37.16 0.15 0.99 16 13 C 0.02 0.38 2.45 -93.41 -0.23 0.15 16 14 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 15 C 0.24 4.93 13.71 -20.79 -0.28 4.65 16 16 N -0.46 -10.40 18.53 42.12 0.78 -9.62 16 17 C 0.00 -0.04 3.49 -27.88 -0.10 -0.14 16 18 C -0.53 -13.94 9.15 -34.44 -0.32 -14.25 16 19 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 20 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 21 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 22 Si 0.88 19.97 27.47 -169.99 -4.67 15.30 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 26 C -0.19 -2.06 9.03 -39.46 -0.36 -2.42 16 27 C -0.10 -0.92 9.96 -39.42 -0.39 -1.31 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.42 2.25 8.93 -40.82 -0.36 1.89 16 34 H 0.14 1.67 6.41 -52.49 -0.34 1.34 16 35 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 36 H 0.08 0.92 7.67 -51.93 -0.40 0.52 16 37 H 0.07 0.87 7.64 -51.93 -0.40 0.48 16 38 H 0.04 0.78 7.20 -51.93 -0.37 0.41 16 39 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.14 1.28 6.29 -52.48 -0.33 0.95 16 42 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -33.88 366.77 -6.16 -40.04 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.55 Total: 0.04 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.07 Total: -3.92 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 1.48 Total: -40.98 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.88 Total: -16.01 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.88 -6.16 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155007802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.610 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds