Wall clock time and date at job start Tue Mar 31 2020 13:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.47261 * 2 1 4 4 C 1.34652 * 116.99955 * 179.97438 * 3 2 1 5 5 O 1.21514 * 120.00082 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99546 * 179.97438 * 4 3 2 7 7 C 1.40156 * 119.99528 * 185.31817 * 6 4 3 8 8 C 1.38836 * 120.01847 * 33.26569 * 7 6 4 9 9 C 1.38092 * 119.98614 * 180.02562 * 8 7 6 10 10 C 1.38713 * 120.01609 * 0.02562 * 9 8 7 11 11 O 1.35977 * 119.98832 * 179.97438 * 10 9 8 12 12 C 1.42894 * 117.00281 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47347 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47252 * 55.00124 * 13 12 11 15 15 C 1.47202 * 109.47168 * 295.00502 * 13 12 11 16 16 N 9.27615 * 160.45739 * 339.54607 * 4 1 2 17 17 C 1.52994 * 109.47206 * 175.00323 * 13 12 11 18 18 C 1.50704 * 109.47319 * 185.00096 * 17 13 12 19 19 H 1.07999 * 119.99803 * 359.97438 * 18 17 13 20 20 C 1.37871 * 120.00356 * 179.97438 * 18 17 13 21 21 N 1.31521 * 120.00204 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00117 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47350 * 89.99806 * 22 20 18 24 24 H 1.48494 * 109.47271 * 210.00089 * 22 20 18 25 25 H 1.48506 * 109.46918 * 329.99934 * 22 20 18 26 26 C 1.38717 * 120.02501 * 0.24896 * 10 9 8 27 27 C 1.38091 * 120.01491 * 359.45621 * 26 10 9 28 28 H 1.08999 * 109.47358 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46936 * 300.00419 * 1 2 3 30 30 H 1.09004 * 109.46962 * 59.99744 * 1 2 3 31 31 H 1.09001 * 109.47177 * 240.00496 * 2 1 3 32 32 H 1.08995 * 109.46824 * 120.00184 * 2 1 3 33 33 H 0.96993 * 120.00328 * 5.31266 * 6 4 3 34 34 H 1.08001 * 120.00304 * 0.02562 * 8 7 6 35 35 H 1.08004 * 119.98701 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47311 * 300.00462 * 12 11 10 37 37 H 1.09004 * 109.46762 * 59.99707 * 12 11 10 38 38 H 1.09001 * 109.47533 * 304.99939 * 17 13 12 39 39 H 1.08994 * 109.47596 * 65.00277 * 17 13 12 40 40 H 0.96997 * 120.00131 * 179.97438 * 21 20 18 41 41 H 1.08003 * 119.98679 * 179.70029 * 26 10 9 42 42 H 1.08006 * 120.00450 * 180.24822 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3490 1.5453 0.0005 5 8 4.0892 0.5817 0.0015 6 7 3.8641 2.7908 0.0000 7 6 5.2488 2.9764 -0.1119 8 6 6.0085 2.0956 -0.8699 9 6 7.3729 2.2787 -0.9793 10 6 7.9844 3.3420 -0.3317 11 8 9.3280 3.5215 -0.4394 12 6 9.8911 4.6373 0.2533 13 6 11.4021 4.6749 0.0165 14 1 11.6019 4.6827 -1.0550 15 6 12.0235 3.4862 0.6228 16 7 12.5046 2.5678 1.0852 17 6 11.9869 5.9370 0.6535 18 6 13.4523 6.0374 0.3162 19 1 13.9198 5.2767 -0.2914 20 6 14.1961 7.1001 0.7832 21 7 15.4750 7.1874 0.4892 22 14 13.3877 8.4155 1.8348 23 1 13.4893 8.0361 3.2669 24 1 14.0737 9.7143 1.6169 25 1 11.9572 8.5417 1.4565 26 6 7.2267 4.2191 0.4305 27 6 5.8614 4.0406 0.5357 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.2765 3.5587 0.0771 34 1 5.5325 1.2674 -1.3739 35 1 7.9638 1.5938 -1.5693 36 1 9.4419 5.5590 -0.1167 37 1 9.6932 4.5398 1.3207 38 1 11.4649 6.8134 0.2693 39 1 11.8658 5.8875 1.7356 40 1 15.9982 7.9353 0.8175 41 1 7.7042 5.0440 0.9384 42 1 5.2711 4.7260 1.1259 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155007802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:40 Heat of formation + Delta-G solvation = -92.200655 kcal Electronic energy + Delta-G solvation = -24731.941865 eV Core-core repulsion = 20869.765019 eV Total energy + Delta-G solvation = -3862.176846 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.00577 -41.00203 -39.32692 -38.07689 -37.36925 -35.80977 -35.45283 -33.90033 -32.56827 -32.05438 -30.11990 -29.00783 -25.81200 -24.70957 -23.81124 -23.31003 -23.17110 -21.97781 -20.08590 -19.21070 -18.93419 -18.64614 -18.42610 -17.82115 -17.27240 -16.88905 -16.34148 -16.20407 -15.64387 -15.30116 -15.11903 -14.98687 -14.78559 -14.51135 -14.32403 -14.23667 -13.87582 -13.76834 -13.62847 -13.48180 -13.27767 -13.13930 -12.95621 -12.61432 -12.53997 -12.23994 -12.08146 -11.92836 -11.75979 -11.71169 -11.63622 -11.53360 -11.33612 -10.96343 -10.72368 -9.98851 -8.75013 -8.23101 -6.30251 0.27614 0.35867 1.00658 1.46674 1.48301 1.58994 1.61634 1.86785 1.96267 2.25995 2.43364 2.79499 3.07531 3.09369 3.17515 3.79755 3.93738 4.01857 4.03058 4.07836 4.20810 4.22076 4.33785 4.41432 4.48671 4.52351 4.57374 4.72105 4.74803 4.89704 4.93290 5.03837 5.11813 5.20164 5.26860 5.32168 5.36434 5.40400 5.47211 5.62642 5.81174 6.24431 6.25102 6.47938 6.72326 6.80081 7.15198 7.34225 8.93760 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.032067 B = 0.002018 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.952848 B =13871.996433 C =14452.616549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 O -0.365 6.365 4 C 0.645 3.355 5 O -0.590 6.590 6 N -0.632 5.632 7 C 0.106 3.894 8 C -0.091 4.091 9 C -0.149 4.149 10 C 0.111 3.889 11 O -0.332 6.332 12 C 0.068 3.932 13 C 0.025 3.975 14 H 0.125 0.875 15 C 0.250 3.750 16 N -0.507 5.507 17 C 0.001 3.999 18 C -0.535 4.535 19 H 0.027 0.973 20 C 0.002 3.998 21 N -0.955 5.955 22 Si 0.949 3.051 23 H -0.277 1.277 24 H -0.292 1.292 25 H -0.213 1.213 26 C -0.187 4.187 27 C -0.086 4.086 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.433 0.567 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.035 0.965 40 H 0.265 0.735 41 H 0.163 0.837 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.829 -4.412 -1.125 36.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.001 4.001 3 O -0.279 6.279 4 C 0.399 3.601 5 O -0.481 6.481 6 N -0.286 5.286 7 C 0.013 3.987 8 C -0.111 4.111 9 C -0.169 4.169 10 C 0.065 3.935 11 O -0.246 6.246 12 C -0.007 4.007 13 C 0.003 3.997 14 H 0.142 0.858 15 C -0.066 4.066 16 N -0.185 5.185 17 C -0.038 4.038 18 C -0.573 4.573 19 H 0.045 0.955 20 C -0.195 4.195 21 N -0.595 5.595 22 Si 0.771 3.229 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.135 1.135 26 C -0.206 4.206 27 C -0.106 4.106 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.272 0.728 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.180 0.820 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -34.608 -6.364 -0.535 35.192 hybrid contribution 0.539 0.739 0.188 0.934 sum -34.069 -5.625 -0.346 34.532 Atomic orbital electron populations 1.21854 0.89985 1.04572 1.03891 1.23291 0.96691 0.77349 1.02805 1.86261 1.20306 1.34964 1.86393 1.18262 0.81752 0.84211 0.75905 1.91024 1.60457 1.40783 1.55794 1.41777 1.05959 1.06272 1.74617 1.17460 0.81548 0.99024 1.00682 1.20894 0.92902 0.99502 0.97830 1.20388 0.94224 0.98591 1.03651 1.19204 0.82594 0.95299 0.96377 1.86096 1.19409 1.49269 1.69865 1.23054 0.90139 0.89603 0.97942 1.19110 0.91797 0.86890 1.01902 0.85761 1.29555 0.91641 0.93417 0.92017 1.80993 1.11127 1.14570 1.11768 1.19576 0.94243 0.92808 0.97154 1.21356 0.94828 1.08426 1.32715 0.95475 1.26078 0.95099 1.00907 0.97381 1.70097 1.09009 1.32666 1.47751 0.85691 0.81536 0.77157 0.78481 1.20281 1.21824 1.13532 1.21424 0.94359 1.01933 1.02849 1.20935 0.94066 0.97745 0.97858 0.87972 0.91079 0.91068 0.91221 0.91347 0.72773 0.85359 0.85227 0.86042 0.89980 0.90492 0.94700 0.92652 0.82003 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 71.98 0.74 -0.09 16 2 C 0.07 0.88 6.19 71.98 0.45 1.32 16 3 O -0.37 -5.74 10.27 -55.61 -0.57 -6.31 16 4 C 0.64 12.83 8.49 129.79 1.10 13.94 16 5 O -0.59 -16.03 13.82 19.80 0.27 -15.75 16 6 N -0.63 -9.53 5.36 -429.32 -2.30 -11.82 16 7 C 0.11 1.98 6.28 38.10 0.24 2.22 16 8 C -0.09 -2.12 8.65 22.38 0.19 -1.93 16 9 C -0.15 -3.69 9.98 22.35 0.22 -3.47 16 10 C 0.11 2.66 6.69 22.50 0.15 2.81 16 11 O -0.33 -9.00 9.88 -93.29 -0.92 -9.92 16 12 C 0.07 1.59 4.09 71.98 0.29 1.88 16 13 C 0.02 0.80 2.45 -12.60 -0.03 0.77 16 14 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 15 C 0.25 10.26 13.71 89.45 1.23 11.49 16 16 N -0.51 -23.48 18.53 20.00 0.37 -23.11 16 17 C 0.00 0.02 3.49 29.85 0.10 0.13 16 18 C -0.54 -28.15 9.15 25.60 0.23 -27.92 16 19 H 0.03 1.64 7.84 -2.91 -0.02 1.61 16 20 C 0.00 0.11 5.47 84.65 0.46 0.57 16 21 N -0.95 -58.42 13.96 21.45 0.30 -58.13 16 22 Si 0.95 39.55 27.47 68.60 1.88 41.44 16 23 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 24 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.21 -7.19 6.54 99.48 0.65 -6.54 16 26 C -0.19 -3.32 9.03 22.35 0.20 -3.11 16 27 C -0.09 -1.28 9.96 22.38 0.22 -1.06 16 28 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.43 3.35 8.93 -92.71 -0.83 2.52 16 34 H 0.13 3.21 6.41 -2.91 -0.02 3.19 16 35 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.12 1.95 7.67 -2.39 -0.02 1.93 16 37 H 0.08 1.72 7.64 -2.39 -0.02 1.70 16 38 H 0.08 2.44 7.20 -2.39 -0.02 2.42 16 39 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 40 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.16 2.06 6.29 -2.91 -0.02 2.05 16 42 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -78.11 366.77 5.02 -73.10 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.17 Total: 12.97 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.81 Total: -2.46 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -1.63 Total: -93.06 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.22 Total: -31.98 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.88 Total: 41.44 kcal Total: -78.11 5.02 -73.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155007802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.105 kcal (2) G-P(sol) polarization free energy of solvation -78.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds