Wall clock time and date at job start Tue Mar 31 2020 13:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47107 * 2 1 4 4 O 1.42903 * 109.47184 * 119.98980 * 2 1 3 5 5 C 1.35979 * 117.00591 * 275.09569 * 4 2 1 6 6 C 1.38697 * 120.00292 * 185.45875 * 5 4 2 7 7 C 1.38129 * 119.99665 * 180.25198 * 6 5 4 8 8 C 1.38696 * 120.00356 * 359.53669 * 7 6 5 9 9 O 1.35982 * 119.99970 * 180.20774 * 8 7 6 10 10 C 1.42904 * 117.00321 * 0.20997 * 9 8 7 11 11 C 1.52995 * 109.47019 * 179.97438 * 10 9 8 12 12 H 1.08995 * 109.48058 * 305.00216 * 11 10 9 13 13 C 1.47208 * 109.46936 * 65.00535 * 11 10 9 14 14 N 9.40454 * 84.34511 * 69.95004 * 2 1 3 15 15 C 1.53002 * 109.46806 * 185.00004 * 11 10 9 16 16 C 1.50703 * 109.47070 * 175.00693 * 15 11 10 17 17 H 1.07999 * 119.99714 * 359.97438 * 16 15 11 18 18 C 1.37882 * 119.99984 * 180.02562 * 16 15 11 19 19 N 1.31519 * 119.99780 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99764 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46999 * 90.00993 * 20 18 16 22 22 H 1.48504 * 109.47132 * 210.00350 * 20 18 16 23 23 H 1.48503 * 109.47622 * 330.00471 * 20 18 16 24 24 C 1.38696 * 119.99660 * 0.41990 * 8 7 6 25 25 C 1.38127 * 120.00560 * 359.81246 * 24 8 7 26 26 C 1.50697 * 109.47701 * 239.99737 * 2 1 3 27 27 N 1.34775 * 120.00269 * 64.99624 * 26 2 1 28 28 O 1.21284 * 120.00007 * 244.99937 * 26 2 1 29 29 H 1.08995 * 109.47766 * 300.00684 * 1 2 3 30 30 H 1.09000 * 109.47286 * 60.00942 * 1 2 3 31 31 H 1.09008 * 109.46764 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99950 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.99567 * 179.71983 * 7 6 5 34 34 H 1.08997 * 109.47175 * 300.00062 * 10 9 8 35 35 H 1.09006 * 109.46682 * 59.99923 * 10 9 8 36 36 H 1.09006 * 109.47447 * 295.00191 * 15 11 10 37 37 H 1.09000 * 109.47064 * 55.00790 * 15 11 10 38 38 H 0.97001 * 119.99573 * 179.97438 * 19 18 16 39 39 H 1.08004 * 119.99409 * 179.78823 * 24 8 7 40 40 H 1.07999 * 120.00473 * 179.97438 * 25 24 8 41 41 H 0.97001 * 119.99700 * 0.02562 * 27 26 2 42 42 H 0.96994 * 120.00327 * 180.02562 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6734 1.1669 5 6 2.1107 0.0628 2.3054 6 6 2.6718 -0.4963 3.4439 7 6 2.7730 0.2500 4.6018 8 6 2.3223 1.5616 4.6232 9 8 2.4259 2.2976 5.7619 10 6 3.0132 1.6579 6.8968 11 6 3.0445 2.6351 8.0735 12 1 3.5595 3.5479 7.7744 13 6 1.6670 2.9593 8.4789 14 7 0.6032 3.2086 8.7916 15 6 3.7845 1.9940 9.2492 16 6 3.9229 2.9988 10.3638 17 1 3.5234 3.9951 10.2453 18 6 4.5605 2.6464 11.5345 19 7 4.6816 3.5235 12.5070 20 14 5.2521 0.9234 11.7392 21 1 6.6564 0.8931 11.2570 22 1 5.2131 0.5414 13.1737 23 1 4.4368 -0.0344 10.9496 24 6 1.7620 2.1209 3.4844 25 6 1.6564 1.3732 2.3278 26 6 2.0324 -0.7104 -1.2304 27 7 1.7920 -0.1944 -2.4520 28 8 2.6531 -1.7467 -1.1213 29 1 -0.3634 0.5139 0.8898 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 3.0254 -1.5166 3.4264 33 1 3.2058 -0.1868 5.4896 34 1 2.4224 0.7825 7.1666 35 1 4.0300 1.3492 6.6540 36 1 3.2219 1.1311 9.6058 37 1 4.7743 1.6733 8.9242 38 1 5.1299 3.2755 13.3307 39 1 1.4080 3.1411 3.5021 40 1 1.2197 1.8086 1.4412 41 1 1.2959 0.6346 -2.5392 42 1 2.1151 -0.6518 -3.2439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155314402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:55 Heat of formation + Delta-G solvation = -65.763742 kcal Electronic energy + Delta-G solvation = -24965.875304 eV Core-core repulsion = 21104.844848 eV Total energy + Delta-G solvation = -3861.030455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98361 -40.00134 -38.90248 -37.00729 -35.94590 -34.45506 -33.86622 -32.29927 -31.98670 -31.02959 -29.19301 -27.60608 -25.32634 -24.38254 -22.87065 -22.21785 -21.55687 -20.67090 -18.84474 -18.39115 -17.76831 -17.25634 -17.04505 -16.78690 -16.13179 -16.03664 -15.39337 -15.12002 -14.77731 -14.56251 -14.36815 -14.01994 -13.74009 -13.54075 -13.41607 -13.06815 -12.98092 -12.70981 -12.61779 -12.45039 -12.24998 -12.09127 -11.79127 -11.43561 -11.30358 -11.07563 -10.71617 -10.57683 -10.47138 -10.27479 -10.26680 -10.16750 -9.89137 -9.42389 -9.26031 -8.67805 -7.85559 -6.16545 -4.18489 1.07380 1.32061 2.05000 2.32912 3.15466 3.21969 3.30641 3.31483 3.32966 3.54455 3.57734 3.58980 4.12499 4.24582 4.32624 4.36404 4.55338 4.60982 4.63776 4.81718 4.94714 5.07706 5.10053 5.17353 5.20783 5.31758 5.43443 5.51588 5.54913 5.70940 5.81083 6.02341 6.08899 6.12654 6.18126 6.22698 6.40292 6.67051 6.78272 6.98594 7.07325 7.40652 7.55176 7.68288 8.30766 8.36319 8.86272 9.42022 10.96238 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002137 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.532338 B =13101.318702 C =13776.985161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 H 0.100 0.900 4 O -0.287 6.287 5 C 0.082 3.918 6 C -0.104 4.104 7 C -0.169 4.169 8 C 0.107 3.893 9 O -0.312 6.312 10 C 0.063 3.937 11 C 0.022 3.978 12 H 0.119 0.881 13 C 0.241 3.759 14 N -0.460 5.460 15 C -0.003 4.003 16 C -0.531 4.531 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.264 1.264 24 C -0.115 4.115 25 C -0.172 4.172 26 C 0.522 3.478 27 N -0.851 5.851 28 O -0.517 6.517 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.028 0.972 37 H 0.038 0.962 38 H 0.266 0.734 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.402 0.598 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.283 -6.360 -30.336 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.005 3.995 3 H 0.117 0.883 4 O -0.200 6.200 5 C 0.038 3.962 6 C -0.122 4.122 7 C -0.187 4.187 8 C 0.062 3.938 9 O -0.226 6.226 10 C -0.014 4.014 11 C 0.001 3.999 12 H 0.137 0.863 13 C -0.076 4.076 14 N -0.136 5.136 15 C -0.041 4.041 16 C -0.568 4.568 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.531 5.531 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.188 1.188 24 C -0.134 4.134 25 C -0.190 4.190 26 C 0.305 3.695 27 N -0.417 5.417 28 O -0.391 6.391 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.231 0.769 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.441 -6.630 -29.365 30.785 hybrid contribution 0.716 -0.603 -0.172 0.951 sum -5.725 -7.233 -29.537 30.944 Atomic orbital electron populations 1.22355 0.92546 1.04564 1.04038 1.22103 0.95793 0.97069 0.84492 0.88269 1.86205 1.81776 1.36581 1.15489 1.18846 0.99779 0.90774 0.86818 1.20218 1.00879 1.00908 0.90244 1.21199 1.04515 0.93775 0.99236 1.18945 0.97246 0.90452 0.87186 1.86139 1.77559 1.40569 1.18351 1.23081 0.98720 0.96156 0.83396 1.19007 0.85771 1.00751 0.94403 0.86328 1.28779 0.94208 0.92745 0.91894 1.81044 1.13338 1.09256 1.09973 1.19638 0.95282 0.97345 0.91845 1.20948 1.38372 0.99270 0.98254 0.90587 1.24981 0.95325 0.97153 0.95577 1.69900 1.42682 1.34674 1.05866 0.86824 0.79909 0.85112 0.77759 1.19903 1.21198 1.18835 1.20219 1.01903 1.00847 0.90391 1.21010 1.05204 0.93726 0.99077 1.20166 0.79349 0.85245 0.84721 1.43701 1.60701 1.29539 1.07789 1.90809 1.38870 1.22957 1.86422 0.90116 0.90452 0.90598 0.84767 0.84228 0.91366 0.89908 0.95343 0.94437 0.92434 0.84769 0.84966 0.76899 0.76066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.85 9.12 37.15 0.34 -0.52 16 2 C 0.07 0.46 2.64 -27.89 -0.07 0.39 16 3 H 0.10 0.48 6.31 -51.93 -0.33 0.15 16 4 O -0.29 -3.18 9.34 -39.53 -0.37 -3.55 16 5 C 0.08 0.90 6.60 -39.24 -0.26 0.64 16 6 C -0.10 -1.17 9.98 -39.45 -0.39 -1.56 16 7 C -0.17 -1.93 9.03 -39.45 -0.36 -2.29 16 8 C 0.11 1.36 6.69 -39.24 -0.26 1.09 16 9 O -0.31 -4.45 9.88 -19.68 -0.19 -4.65 16 10 C 0.06 0.85 4.09 37.16 0.15 1.00 16 11 C 0.02 0.38 2.45 -93.40 -0.23 0.16 16 12 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 13 C 0.24 4.90 13.71 -20.74 -0.28 4.62 16 14 N -0.46 -10.27 18.54 42.17 0.78 -9.49 16 15 C 0.00 -0.05 3.49 -27.88 -0.10 -0.15 16 16 C -0.53 -13.93 9.15 -34.44 -0.32 -14.24 16 17 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 18 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 19 N -0.89 -26.50 13.96 55.43 0.77 -25.72 16 20 Si 0.88 20.10 27.47 -169.99 -4.67 15.43 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 24 C -0.11 -1.26 9.98 -39.45 -0.39 -1.65 16 25 C -0.17 -1.60 8.24 -39.45 -0.32 -1.93 16 26 C 0.52 4.23 7.45 -10.99 -0.08 4.14 16 27 N -0.85 -2.72 8.84 31.22 0.28 -2.45 16 28 O -0.52 -6.92 17.34 -14.30 -0.25 -7.17 16 29 H 0.08 0.41 6.91 -51.93 -0.36 0.05 16 30 H 0.08 0.14 7.93 -51.93 -0.41 -0.28 16 31 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.14 1.40 6.29 -52.49 -0.33 1.07 16 34 H 0.07 0.88 7.65 -51.93 -0.40 0.48 16 35 H 0.08 0.93 7.67 -51.93 -0.40 0.53 16 36 H 0.03 0.59 7.20 -51.93 -0.37 0.21 16 37 H 0.04 0.70 7.57 -51.93 -0.39 0.31 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 40 H 0.13 0.82 5.42 -52.49 -0.28 0.53 16 41 H 0.40 -0.06 8.61 -40.82 -0.35 -0.41 16 42 H 0.41 0.99 8.93 -40.82 -0.36 0.62 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -36.18 363.24 -6.11 -42.29 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.26 Total: -1.76 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.68 Total: -8.40 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 1.83 Total: -37.66 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.81 Total: -15.36 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.18 -6.11 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155314402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.473 kcal (2) G-P(sol) polarization free energy of solvation -36.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds