Wall clock time and date at job start Tue Mar 31 2020 13:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47107 * 2 1 4 4 O 1.42903 * 109.47184 * 119.98980 * 2 1 3 5 5 C 1.35979 * 117.00591 * 275.09569 * 4 2 1 6 6 C 1.38697 * 120.00292 * 185.45875 * 5 4 2 7 7 C 1.38129 * 119.99665 * 180.25198 * 6 5 4 8 8 C 1.38696 * 120.00356 * 359.53669 * 7 6 5 9 9 O 1.35982 * 119.99970 * 180.20774 * 8 7 6 10 10 C 1.42904 * 117.00321 * 0.20997 * 9 8 7 11 11 C 1.52995 * 109.47019 * 179.97438 * 10 9 8 12 12 H 1.08995 * 109.48058 * 305.00216 * 11 10 9 13 13 C 1.47208 * 109.46936 * 65.00535 * 11 10 9 14 14 N 9.40454 * 84.34511 * 69.95004 * 2 1 3 15 15 C 1.53002 * 109.46806 * 185.00004 * 11 10 9 16 16 C 1.50703 * 109.47070 * 175.00693 * 15 11 10 17 17 H 1.07999 * 119.99714 * 359.97438 * 16 15 11 18 18 C 1.37882 * 119.99984 * 180.02562 * 16 15 11 19 19 N 1.31519 * 119.99780 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99764 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46999 * 90.00993 * 20 18 16 22 22 H 1.48504 * 109.47132 * 210.00350 * 20 18 16 23 23 H 1.48503 * 109.47622 * 330.00471 * 20 18 16 24 24 C 1.38696 * 119.99660 * 0.41990 * 8 7 6 25 25 C 1.38127 * 120.00560 * 359.81246 * 24 8 7 26 26 C 1.50697 * 109.47701 * 239.99737 * 2 1 3 27 27 N 1.34775 * 120.00269 * 64.99624 * 26 2 1 28 28 O 1.21284 * 120.00007 * 244.99937 * 26 2 1 29 29 H 1.08995 * 109.47766 * 300.00684 * 1 2 3 30 30 H 1.09000 * 109.47286 * 60.00942 * 1 2 3 31 31 H 1.09008 * 109.46764 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99950 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.99567 * 179.71983 * 7 6 5 34 34 H 1.08997 * 109.47175 * 300.00062 * 10 9 8 35 35 H 1.09006 * 109.46682 * 59.99923 * 10 9 8 36 36 H 1.09006 * 109.47447 * 295.00191 * 15 11 10 37 37 H 1.09000 * 109.47064 * 55.00790 * 15 11 10 38 38 H 0.97001 * 119.99573 * 179.97438 * 19 18 16 39 39 H 1.08004 * 119.99409 * 179.78823 * 24 8 7 40 40 H 1.07999 * 120.00473 * 179.97438 * 25 24 8 41 41 H 0.97001 * 119.99700 * 0.02562 * 27 26 2 42 42 H 0.96994 * 120.00327 * 180.02562 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6734 1.1669 5 6 2.1107 0.0628 2.3054 6 6 2.6718 -0.4963 3.4439 7 6 2.7730 0.2500 4.6018 8 6 2.3223 1.5616 4.6232 9 8 2.4259 2.2976 5.7619 10 6 3.0132 1.6579 6.8968 11 6 3.0445 2.6351 8.0735 12 1 3.5595 3.5479 7.7744 13 6 1.6670 2.9593 8.4789 14 7 0.6032 3.2086 8.7916 15 6 3.7845 1.9940 9.2492 16 6 3.9229 2.9988 10.3638 17 1 3.5234 3.9951 10.2453 18 6 4.5605 2.6464 11.5345 19 7 4.6816 3.5235 12.5070 20 14 5.2521 0.9234 11.7392 21 1 6.6564 0.8931 11.2570 22 1 5.2131 0.5414 13.1737 23 1 4.4368 -0.0344 10.9496 24 6 1.7620 2.1209 3.4844 25 6 1.6564 1.3732 2.3278 26 6 2.0324 -0.7104 -1.2304 27 7 1.7920 -0.1944 -2.4520 28 8 2.6531 -1.7467 -1.1213 29 1 -0.3634 0.5139 0.8898 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 3.0254 -1.5166 3.4264 33 1 3.2058 -0.1868 5.4896 34 1 2.4224 0.7825 7.1666 35 1 4.0300 1.3492 6.6540 36 1 3.2219 1.1311 9.6058 37 1 4.7743 1.6733 8.9242 38 1 5.1299 3.2755 13.3307 39 1 1.4080 3.1411 3.5021 40 1 1.2197 1.8086 1.4412 41 1 1.2959 0.6346 -2.5392 42 1 2.1151 -0.6518 -3.2439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155314402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:54 Heat of formation + Delta-G solvation = -91.959454 kcal Electronic energy + Delta-G solvation = -24967.011235 eV Core-core repulsion = 21104.844848 eV Total energy + Delta-G solvation = -3862.166387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69917 -40.81232 -39.71967 -38.24706 -37.09260 -35.59266 -35.00668 -33.93276 -32.74546 -31.74047 -30.23254 -29.00345 -25.96621 -25.49966 -23.85666 -23.26359 -22.95556 -21.29490 -19.56358 -19.17896 -18.81122 -18.66519 -18.42459 -17.45926 -16.99591 -16.66999 -16.50406 -16.20512 -15.73870 -15.65385 -15.31742 -15.15088 -14.87691 -14.68121 -14.39896 -14.27886 -14.05003 -13.76554 -13.68379 -13.49203 -13.33158 -13.16016 -12.95328 -12.86803 -12.40492 -12.29653 -12.13444 -11.82490 -11.72211 -11.59259 -11.39257 -11.29858 -10.95591 -10.74460 -10.72693 -10.03840 -8.69342 -8.24440 -6.30964 0.29748 0.49008 1.44623 1.47005 1.47527 1.57142 1.77237 1.86583 1.95558 2.27917 2.41694 2.77012 2.79072 3.08307 3.16138 3.68066 3.79733 3.84171 3.89190 3.95056 4.02957 4.11942 4.19813 4.39348 4.47493 4.51022 4.60952 4.67655 4.72409 4.73190 4.98256 5.05256 5.16776 5.17527 5.31090 5.38085 5.39930 5.59325 5.62736 5.82161 6.22614 6.25907 6.41475 6.56154 6.71927 6.79276 7.25196 7.33341 8.92248 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002137 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.532338 B =13101.318702 C =13776.985161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.059 3.941 3 H 0.127 0.873 4 O -0.313 6.313 5 C 0.078 3.922 6 C -0.120 4.120 7 C -0.170 4.170 8 C 0.083 3.917 9 O -0.330 6.330 10 C 0.069 3.931 11 C 0.027 3.973 12 H 0.126 0.874 13 C 0.251 3.749 14 N -0.504 5.504 15 C -0.001 4.001 16 C -0.533 4.533 17 H 0.030 0.970 18 C 0.003 3.997 19 N -0.953 5.953 20 Si 0.948 3.052 21 H -0.256 1.256 22 H -0.297 1.297 23 H -0.233 1.233 24 C -0.121 4.121 25 C -0.162 4.162 26 C 0.519 3.481 27 N -0.824 5.824 28 O -0.581 6.581 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.059 0.941 32 H 0.138 0.862 33 H 0.153 0.847 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.265 0.735 39 H 0.144 0.856 40 H 0.166 0.834 41 H 0.422 0.578 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 -7.553 -33.157 34.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.001 4.001 3 H 0.144 0.856 4 O -0.227 6.227 5 C 0.034 3.966 6 C -0.139 4.139 7 C -0.188 4.188 8 C 0.038 3.962 9 O -0.244 6.244 10 C -0.007 4.007 11 C 0.005 3.995 12 H 0.144 0.856 13 C -0.066 4.066 14 N -0.181 5.181 15 C -0.039 4.039 16 C -0.571 4.571 17 H 0.048 0.952 18 C -0.194 4.194 19 N -0.593 5.593 20 Si 0.771 3.229 21 H -0.181 1.181 22 H -0.224 1.224 23 H -0.156 1.156 24 C -0.140 4.140 25 C -0.180 4.180 26 C 0.303 3.697 27 N -0.391 5.391 28 O -0.460 6.460 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.156 0.844 33 H 0.171 0.829 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.162 0.838 40 H 0.183 0.817 41 H 0.255 0.745 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.337 -7.782 -32.270 33.795 hybrid contribution 0.591 -0.110 0.554 0.817 sum -5.746 -7.891 -31.716 33.184 Atomic orbital electron populations 1.22375 0.90696 1.04113 1.05874 1.22445 0.97144 0.97792 0.82720 0.85567 1.86183 1.82123 1.37959 1.16465 1.19024 0.99461 0.91325 0.86836 1.20405 1.01475 1.01320 0.90690 1.21317 1.04333 0.93394 0.99767 1.19177 0.98885 0.91061 0.87073 1.86076 1.78189 1.41261 1.18898 1.22977 1.00851 0.94695 0.82138 1.19057 0.83459 1.01974 0.95005 0.85616 1.29518 0.94760 0.91548 0.90743 1.81035 1.14973 1.10751 1.11364 1.19576 0.97514 0.95860 0.90995 1.21328 1.36821 0.98781 1.00157 0.95163 1.26045 0.96073 1.02062 0.95210 1.70089 1.44856 1.37544 1.06823 0.85697 0.80213 0.79562 0.77463 1.18075 1.22371 1.15622 1.20478 1.01564 1.01508 0.90418 1.21280 1.04175 0.92894 0.99695 1.20475 0.78562 0.84515 0.86140 1.43513 1.59255 1.29757 1.06540 1.90784 1.42074 1.25776 1.87383 0.90018 0.86834 0.92229 0.84441 0.82938 0.90414 0.86768 0.94711 0.91052 0.92622 0.83841 0.81678 0.74549 0.75334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 9.12 71.98 0.66 -0.52 16 2 C 0.06 0.69 2.64 29.84 0.08 0.77 16 3 H 0.13 0.74 6.31 -2.39 -0.02 0.73 16 4 O -0.31 -6.57 9.34 -74.32 -0.69 -7.27 16 5 C 0.08 1.57 6.60 22.49 0.15 1.72 16 6 C -0.12 -2.54 9.98 22.35 0.22 -2.32 16 7 C -0.17 -3.56 9.03 22.35 0.20 -3.36 16 8 C 0.08 1.94 6.69 22.49 0.15 2.09 16 9 O -0.33 -8.76 9.88 -93.34 -0.92 -9.68 16 10 C 0.07 1.69 4.09 71.98 0.29 1.98 16 11 C 0.03 0.87 2.45 -12.60 -0.03 0.84 16 12 H 0.13 3.97 8.14 -2.39 -0.02 3.95 16 13 C 0.25 10.14 13.71 89.44 1.23 11.37 16 14 N -0.50 -22.79 18.54 20.01 0.37 -22.42 16 15 C 0.00 -0.04 3.49 29.85 0.10 0.07 16 16 C -0.53 -28.13 9.15 25.60 0.23 -27.90 16 17 H 0.03 1.82 7.84 -2.91 -0.02 1.79 16 18 C 0.00 0.16 5.47 84.66 0.46 0.63 16 19 N -0.95 -58.29 13.96 21.45 0.30 -58.00 16 20 Si 0.95 40.37 27.47 68.60 1.88 42.25 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.30 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.23 -8.73 6.54 99.48 0.65 -8.08 16 24 C -0.12 -2.39 9.98 22.35 0.22 -2.17 16 25 C -0.16 -2.60 8.24 22.36 0.18 -2.42 16 26 C 0.52 7.63 7.45 87.66 0.65 8.28 16 27 N -0.82 -3.15 8.84 -173.53 -1.53 -4.68 16 28 O -0.58 -15.63 17.34 15.95 0.28 -15.36 16 29 H 0.08 0.58 6.91 -2.39 -0.02 0.56 16 30 H 0.11 -0.09 7.93 -2.39 -0.02 -0.11 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.15 2.64 6.29 -2.91 -0.02 2.62 16 34 H 0.08 1.76 7.65 -2.39 -0.02 1.74 16 35 H 0.11 2.09 7.67 -2.38 -0.02 2.08 16 36 H 0.03 1.32 7.20 -2.38 -0.02 1.30 16 37 H 0.07 2.34 7.57 -2.39 -0.02 2.33 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.17 1.38 5.42 -2.91 -0.02 1.37 16 41 H 0.42 -1.71 8.61 -92.71 -0.80 -2.51 16 42 H 0.41 1.11 8.93 -92.71 -0.83 0.28 16 Total: -1.00 -83.61 363.24 3.90 -79.72 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -0.60 Total: 6.36 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 4.81 Total: -10.93 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -0.86 Total: -85.10 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.34 Total: -32.30 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.88 Total: 42.25 kcal Total: -83.61 3.90 -79.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155314402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.243 kcal (2) G-P(sol) polarization free energy of solvation -83.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds