Wall clock time and date at job start Tue Mar 31 2020 12:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 5 5 H 1.07998 * 120.00571 * 119.99773 * 4 2 1 6 6 C 1.37887 * 119.99671 * 299.99295 * 4 2 1 7 7 N 1.31514 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99784 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46793 * 90.00407 * 8 6 4 10 10 H 1.48497 * 109.47311 * 210.00105 * 8 6 4 11 11 H 1.48491 * 109.47214 * 330.00626 * 8 6 4 12 12 O 1.45193 * 109.46935 * 239.99336 * 2 1 3 13 13 C 1.34231 * 117.00126 * 90.00449 * 12 2 1 14 14 O 1.20833 * 119.99644 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00640 * 179.71955 * 13 12 2 16 16 H 1.09003 * 110.85420 * 59.57643 * 15 13 12 17 17 C 1.54624 * 110.97154 * 295.78988 * 15 13 12 18 18 C 1.51282 * 104.19366 * 266.67394 * 17 15 13 19 19 O 1.21288 * 124.93734 * 163.78248 * 18 17 15 20 20 N 1.34415 * 110.11900 * 343.74615 * 18 17 15 21 21 C 1.46494 * 124.35149 * 179.58497 * 20 18 17 22 22 C 1.50699 * 109.47051 * 89.98024 * 21 20 18 23 23 C 1.38231 * 119.62206 * 94.99940 * 22 21 20 24 24 C 1.38621 * 119.16112 * 179.97438 * 23 22 21 25 25 C 1.38672 * 118.42441 * 359.97438 * 24 23 22 26 26 C 1.38185 * 119.16183 * 359.97438 * 25 24 23 27 27 N 1.31859 * 119.61582 * 274.72666 * 22 21 20 28 28 C 1.46867 * 111.30633 * 359.58903 * 20 18 17 29 29 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 30 30 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 32 32 H 0.96993 * 119.99970 * 179.97438 * 7 6 4 33 33 H 1.09000 * 110.48888 * 25.35062 * 17 15 13 34 34 H 1.09000 * 110.48958 * 147.86546 * 17 15 13 35 35 H 1.09003 * 109.47077 * 209.97562 * 21 20 18 36 36 H 1.09001 * 109.47272 * 329.97836 * 21 20 18 37 37 H 1.07996 * 120.41539 * 0.02562 * 23 22 21 38 38 H 1.08004 * 120.78680 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.42401 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.61817 * 180.02562 * 26 25 24 41 41 H 1.09004 * 110.25716 * 258.03585 * 28 20 18 42 42 H 1.09004 * 110.27955 * 136.01378 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3211 -1.1203 4.0081 9 1 3.6295 -0.5459 4.4125 10 1 1.3429 -0.9491 5.1121 11 1 2.4855 -2.5661 3.7121 12 8 2.0139 -0.6846 -1.1854 13 6 2.2171 0.0638 -2.2811 14 8 1.9983 1.2517 -2.2504 15 6 2.7247 -0.5763 -3.5474 16 1 2.0387 -1.3496 -3.8933 17 6 4.1473 -1.1481 -3.3467 18 6 5.0629 -0.0311 -3.7968 19 8 6.2472 0.0402 -3.5451 20 7 4.3732 0.8704 -4.5168 21 6 4.9541 2.0830 -5.0982 22 6 5.4588 1.7827 -6.4860 23 6 4.6510 2.0408 -7.5776 24 6 5.1250 1.7614 -8.8499 25 6 6.3999 1.2310 -8.9775 26 6 7.1504 1.0007 -7.8403 27 7 6.6681 1.2818 -6.6454 28 6 2.9623 0.4835 -4.6458 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 0.7082 1.1610 3.4843 33 1 4.3195 -1.3826 -2.2963 34 1 4.2925 -2.0350 -3.9635 35 1 4.1934 2.8620 -5.1489 36 1 5.7820 2.4236 -4.4762 37 1 3.6633 2.4557 -7.4409 38 1 4.5162 1.9531 -9.7211 39 1 6.8013 1.0008 -9.9534 40 1 8.1443 0.5881 -7.9312 41 1 2.7771 0.0543 -5.6306 42 1 2.3173 1.3470 -4.4827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156058638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:37 Heat of formation + Delta-G solvation = -80.954006 kcal Electronic energy + Delta-G solvation = -26329.838072 eV Core-core repulsion = 22468.148917 eV Total energy + Delta-G solvation = -3861.689155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95293 -40.20604 -39.08679 -36.44841 -35.57819 -33.99147 -33.26316 -32.64610 -31.15164 -29.58275 -27.69599 -27.00383 -25.35594 -24.08056 -23.66402 -22.39933 -21.22430 -19.65502 -19.41328 -17.60081 -17.16626 -16.81512 -16.59517 -16.49176 -16.08512 -15.72203 -15.26325 -14.94355 -14.82739 -14.36234 -14.14495 -13.74327 -13.48301 -13.34272 -13.17103 -12.88609 -12.67921 -12.27705 -12.13334 -12.05229 -11.92753 -11.62277 -11.42481 -11.21789 -11.06436 -10.88507 -10.39512 -10.30095 -10.16498 -9.78637 -9.70876 -9.65725 -9.58308 -9.29915 -8.94708 -8.76499 -8.51223 -6.20394 -4.27299 0.76244 1.01498 2.69991 2.81586 2.92220 3.25107 3.29783 3.33035 3.47586 3.67355 4.03269 4.27789 4.31600 4.33737 4.47674 4.56664 4.75117 4.79751 4.84221 5.10861 5.13319 5.17193 5.24847 5.38130 5.43101 5.49550 5.56363 5.59277 5.81171 5.82248 5.86568 5.92536 6.39666 6.45554 6.58666 6.83308 6.85775 7.09407 7.11283 7.56554 7.68358 7.80160 7.88593 8.10134 8.25852 8.55108 8.83813 9.38355 10.87064 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.002764 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.555121 B =10126.450652 C =10596.336039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.351 6.351 13 C 0.459 3.541 14 O -0.514 6.514 15 C -0.099 4.099 16 H 0.131 0.869 17 C -0.145 4.145 18 C 0.520 3.480 19 O -0.513 6.513 20 N -0.613 5.613 21 C 0.178 3.822 22 C 0.110 3.890 23 C -0.160 4.160 24 C -0.078 4.078 25 C -0.175 4.175 26 C 0.099 3.901 27 N -0.460 5.460 28 C 0.114 3.886 29 H 0.016 0.984 30 H 0.037 0.963 31 H 0.100 0.900 32 H 0.266 0.734 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.155 0.845 41 H 0.079 0.921 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 -0.047 -23.360 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.164 3.836 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 O -0.267 6.267 13 C 0.301 3.699 14 O -0.404 6.404 15 C -0.119 4.119 16 H 0.148 0.852 17 C -0.185 4.185 18 C 0.307 3.693 19 O -0.387 6.387 20 N -0.348 5.348 21 C 0.055 3.945 22 C -0.030 4.030 23 C -0.180 4.180 24 C -0.104 4.104 25 C -0.195 4.195 26 C -0.059 4.059 27 N -0.169 5.169 28 C -0.009 4.009 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.172 0.828 41 H 0.097 0.903 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.334 0.366 -22.264 22.897 hybrid contribution -0.452 -0.135 -0.079 0.478 sum 4.882 0.231 -22.343 22.872 Atomic orbital electron populations 1.22163 0.97456 1.00156 1.01436 1.20672 0.91410 0.93909 0.77638 0.93572 1.21020 1.32549 1.13545 0.88835 0.91241 1.24888 0.94869 0.95098 0.99105 1.69890 1.36001 1.22594 1.24234 0.86268 0.78590 0.79932 0.81344 1.20345 1.20946 1.19541 1.86470 1.75511 1.43539 1.21211 1.22857 0.75040 0.85887 0.86109 1.90602 1.48670 1.16651 1.84436 1.21921 0.98526 0.99149 0.92302 0.85151 1.22353 0.91713 0.98130 1.06269 1.20850 0.87676 0.83484 0.77263 1.90745 1.14607 1.76581 1.56745 1.48113 1.10115 1.23320 1.53212 1.20135 0.99305 0.86159 0.88896 1.21753 0.90098 0.94842 0.96267 1.22024 1.01188 1.01757 0.93055 1.21581 0.95542 0.95730 0.97585 1.22187 0.95693 1.01156 1.00433 1.22840 0.99858 0.95724 0.87451 1.67618 1.13514 1.09500 1.26257 1.22088 0.82448 0.99076 0.97239 0.96528 0.94359 0.88205 0.92373 0.86329 0.86708 0.88333 0.88133 0.84634 0.84818 0.84873 0.82794 0.90272 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.32 37.16 0.35 -3.46 16 2 C 0.22 5.68 2.56 -27.88 -0.07 5.61 16 3 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 4 C -0.52 -14.52 8.90 -34.43 -0.31 -14.83 16 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 8 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 12 O -0.35 -7.95 9.75 -39.26 -0.38 -8.34 16 13 C 0.46 8.83 7.20 36.00 0.26 9.09 16 14 O -0.51 -11.20 14.73 -18.76 -0.28 -11.48 16 15 C -0.10 -1.29 3.65 -90.15 -0.33 -1.62 16 16 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 17 C -0.14 -1.95 6.40 -26.74 -0.17 -2.12 16 18 C 0.52 8.45 8.02 -10.86 -0.09 8.36 16 19 O -0.51 -10.24 17.60 5.55 0.10 -10.14 16 20 N -0.61 -8.30 2.92 -173.71 -0.51 -8.81 16 21 C 0.18 2.15 6.24 -5.20 -0.03 2.12 16 22 C 0.11 1.25 6.36 -82.58 -0.53 0.73 16 23 C -0.16 -1.36 9.72 -39.44 -0.38 -1.75 16 24 C -0.08 -0.57 10.18 -39.28 -0.40 -0.97 16 25 C -0.17 -1.32 10.11 -39.44 -0.40 -1.71 16 26 C 0.10 0.98 11.18 -17.55 -0.20 0.78 16 27 N -0.46 -6.01 10.27 -9.47 -0.10 -6.11 16 28 C 0.11 1.28 6.71 -3.07 -0.02 1.26 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 2.65 6.07 -51.93 -0.32 2.34 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.12 1.83 7.80 -51.93 -0.41 1.42 16 34 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 0.92 8.04 -51.93 -0.42 0.51 16 36 H 0.10 1.40 7.93 -51.93 -0.41 0.99 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 1.17 6.98 -51.93 -0.36 0.81 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -35.30 362.35 -8.14 -43.44 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.63 Total: 1.27 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -2.41 Total: 3.11 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.02 Total: -39.44 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.56 Total: -29.96 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.30 -8.14 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156058638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.509 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds