Wall clock time and date at job start Tue Mar 31 2020 12:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 5 5 H 1.07998 * 120.00571 * 119.99773 * 4 2 1 6 6 C 1.37887 * 119.99671 * 299.99295 * 4 2 1 7 7 N 1.31514 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99784 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46793 * 90.00407 * 8 6 4 10 10 H 1.48497 * 109.47311 * 210.00105 * 8 6 4 11 11 H 1.48491 * 109.47214 * 330.00626 * 8 6 4 12 12 O 1.45193 * 109.46935 * 239.99336 * 2 1 3 13 13 C 1.34231 * 117.00126 * 90.00449 * 12 2 1 14 14 O 1.20833 * 119.99644 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00640 * 179.71955 * 13 12 2 16 16 H 1.09003 * 110.85420 * 59.57643 * 15 13 12 17 17 C 1.54624 * 110.97154 * 295.78988 * 15 13 12 18 18 C 1.51282 * 104.19366 * 266.67394 * 17 15 13 19 19 O 1.21288 * 124.93734 * 163.78248 * 18 17 15 20 20 N 1.34415 * 110.11900 * 343.74615 * 18 17 15 21 21 C 1.46494 * 124.35149 * 179.58497 * 20 18 17 22 22 C 1.50699 * 109.47051 * 89.98024 * 21 20 18 23 23 C 1.38231 * 119.62206 * 94.99940 * 22 21 20 24 24 C 1.38621 * 119.16112 * 179.97438 * 23 22 21 25 25 C 1.38672 * 118.42441 * 359.97438 * 24 23 22 26 26 C 1.38185 * 119.16183 * 359.97438 * 25 24 23 27 27 N 1.31859 * 119.61582 * 274.72666 * 22 21 20 28 28 C 1.46867 * 111.30633 * 359.58903 * 20 18 17 29 29 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 30 30 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 32 32 H 0.96993 * 119.99970 * 179.97438 * 7 6 4 33 33 H 1.09000 * 110.48888 * 25.35062 * 17 15 13 34 34 H 1.09000 * 110.48958 * 147.86546 * 17 15 13 35 35 H 1.09003 * 109.47077 * 209.97562 * 21 20 18 36 36 H 1.09001 * 109.47272 * 329.97836 * 21 20 18 37 37 H 1.07996 * 120.41539 * 0.02562 * 23 22 21 38 38 H 1.08004 * 120.78680 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.42401 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.61817 * 180.02562 * 26 25 24 41 41 H 1.09004 * 110.25716 * 258.03585 * 28 20 18 42 42 H 1.09004 * 110.27955 * 136.01378 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3211 -1.1203 4.0081 9 1 3.6295 -0.5459 4.4125 10 1 1.3429 -0.9491 5.1121 11 1 2.4855 -2.5661 3.7121 12 8 2.0139 -0.6846 -1.1854 13 6 2.2171 0.0638 -2.2811 14 8 1.9983 1.2517 -2.2504 15 6 2.7247 -0.5763 -3.5474 16 1 2.0387 -1.3496 -3.8933 17 6 4.1473 -1.1481 -3.3467 18 6 5.0629 -0.0311 -3.7968 19 8 6.2472 0.0402 -3.5451 20 7 4.3732 0.8704 -4.5168 21 6 4.9541 2.0830 -5.0982 22 6 5.4588 1.7827 -6.4860 23 6 4.6510 2.0408 -7.5776 24 6 5.1250 1.7614 -8.8499 25 6 6.3999 1.2310 -8.9775 26 6 7.1504 1.0007 -7.8403 27 7 6.6681 1.2818 -6.6454 28 6 2.9623 0.4835 -4.6458 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 0.7082 1.1610 3.4843 33 1 4.3195 -1.3826 -2.2963 34 1 4.2925 -2.0350 -3.9635 35 1 4.1934 2.8620 -5.1489 36 1 5.7820 2.4236 -4.4762 37 1 3.6633 2.4557 -7.4409 38 1 4.5162 1.9531 -9.7211 39 1 6.8013 1.0008 -9.9534 40 1 8.1443 0.5881 -7.9312 41 1 2.7771 0.0543 -5.6306 42 1 2.3173 1.3470 -4.4827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156058638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:36 Heat of formation + Delta-G solvation = -103.808458 kcal Electronic energy + Delta-G solvation = -26330.829115 eV Core-core repulsion = 22468.148917 eV Total energy + Delta-G solvation = -3862.680198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.12792 -41.13660 -40.48220 -37.93652 -37.12409 -35.37847 -34.86183 -33.32304 -32.13583 -31.47369 -28.80258 -27.92279 -27.44955 -25.34565 -24.38834 -23.21629 -22.90546 -21.17083 -20.58453 -19.08694 -18.51820 -18.10038 -17.81463 -17.49290 -17.31703 -16.77389 -16.65526 -16.47943 -16.06523 -15.81498 -15.06341 -14.87983 -14.70468 -14.40387 -14.24085 -14.03630 -13.99211 -13.79691 -13.50391 -13.16218 -13.09561 -13.05844 -12.86982 -12.79722 -12.66353 -12.47178 -12.35920 -12.15899 -11.59279 -11.29933 -10.98105 -10.96995 -10.80192 -10.60557 -10.42394 -10.00905 -9.78065 -8.30057 -6.46176 0.09500 0.39855 1.28076 1.40873 1.42247 1.48713 1.53848 1.90559 2.01801 2.39660 2.95284 3.00922 3.19440 3.25728 3.34924 3.67835 3.78604 3.89391 4.02896 4.16885 4.25059 4.31328 4.38009 4.46772 4.54100 4.56270 4.63057 4.72827 4.78339 4.80307 4.81287 4.85716 4.86371 5.18510 5.20992 5.27663 5.44420 5.49257 5.65134 5.79995 5.93418 6.01263 6.09218 6.58837 6.94171 7.06954 7.11713 7.25664 8.77403 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.002764 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.555121 B =10126.450652 C =10596.336039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.219 3.781 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.066 0.934 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.979 3.021 9 H -0.276 1.276 10 H -0.273 1.273 11 H -0.261 1.261 12 O -0.359 6.359 13 C 0.450 3.550 14 O -0.544 6.544 15 C -0.085 4.085 16 H 0.181 0.819 17 C -0.138 4.138 18 C 0.503 3.497 19 O -0.567 6.567 20 N -0.611 5.611 21 C 0.174 3.826 22 C 0.087 3.913 23 C -0.153 4.153 24 C -0.075 4.075 25 C -0.164 4.164 26 C 0.076 3.924 27 N -0.510 5.510 28 C 0.117 3.883 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.271 0.729 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.065 0.935 37 H 0.161 0.839 38 H 0.170 0.830 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.129 0.871 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 -1.332 -26.105 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.165 3.835 3 H 0.021 0.979 4 C -0.586 4.586 5 H 0.085 0.915 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.802 3.198 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.185 1.185 12 O -0.275 6.275 13 C 0.294 3.706 14 O -0.435 6.435 15 C -0.104 4.104 16 H 0.198 0.802 17 C -0.178 4.178 18 C 0.292 3.708 19 O -0.445 6.445 20 N -0.344 5.344 21 C 0.052 3.948 22 C -0.052 4.052 23 C -0.173 4.173 24 C -0.101 4.101 25 C -0.184 4.184 26 C -0.081 4.081 27 N -0.220 5.220 28 C -0.004 4.004 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.174 0.826 35 H 0.142 0.858 36 H 0.084 0.916 37 H 0.179 0.821 38 H 0.187 0.813 39 H 0.182 0.818 40 H 0.180 0.820 41 H 0.147 0.853 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.062 -0.905 -25.052 25.396 hybrid contribution -0.038 0.360 0.656 0.749 sum 4.024 -0.546 -24.396 24.732 Atomic orbital electron populations 1.21960 0.96289 1.00599 1.00971 1.20311 0.92261 0.91757 0.79129 0.97883 1.21319 1.33284 1.13882 0.90107 0.91533 1.25795 0.94751 0.95703 1.02094 1.70006 1.36565 1.23648 1.25178 0.85240 0.78020 0.79088 0.77445 1.20215 1.19837 1.18517 1.86454 1.75996 1.43643 1.21384 1.24177 0.73902 0.85756 0.86780 1.90588 1.49877 1.18150 1.84920 1.22145 0.98678 1.00466 0.89081 0.80193 1.22372 0.91152 0.98725 1.05540 1.21416 0.87464 0.84628 0.77306 1.90704 1.16923 1.77988 1.58932 1.48289 1.10968 1.22964 1.52141 1.20218 0.98970 0.86293 0.89340 1.21594 0.90545 0.96743 0.96288 1.22258 1.01716 1.00756 0.92618 1.22039 0.95589 0.94336 0.98163 1.22532 0.95580 0.99435 1.00827 1.23140 1.00856 0.96531 0.87571 1.67493 1.14938 1.11194 1.28357 1.22358 0.80663 0.98739 0.98686 0.95214 0.93282 0.90368 0.92021 0.88737 0.82601 0.85820 0.91603 0.82095 0.81279 0.81775 0.81976 0.85319 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.00 9.32 71.98 0.67 -6.33 16 2 C 0.22 11.83 2.56 29.85 0.08 11.91 16 3 H 0.00 0.21 7.16 -2.39 -0.02 0.19 16 4 C -0.55 -31.19 8.90 25.60 0.23 -30.96 16 5 H 0.07 3.72 7.81 -2.91 -0.02 3.69 16 6 C 0.02 0.91 5.30 84.66 0.45 1.35 16 7 N -0.92 -52.78 11.32 21.45 0.24 -52.53 16 8 Si 0.98 43.44 29.54 68.60 2.03 45.47 16 9 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 12 O -0.36 -16.39 9.75 -51.42 -0.50 -16.89 16 13 C 0.45 17.15 7.20 71.23 0.51 17.67 16 14 O -0.54 -24.11 14.73 21.94 0.32 -23.78 16 15 C -0.08 -1.98 3.65 -10.49 -0.04 -2.02 16 16 H 0.18 2.51 8.14 -2.39 -0.02 2.49 16 17 C -0.14 -3.56 6.40 30.59 0.20 -3.36 16 18 C 0.50 16.65 8.02 87.90 0.71 17.35 16 19 O -0.57 -24.06 17.60 -3.06 -0.05 -24.11 16 20 N -0.61 -16.19 2.92 -822.07 -2.40 -18.59 16 21 C 0.17 4.29 6.24 85.63 0.53 4.83 16 22 C 0.09 1.93 6.36 42.55 0.27 2.20 16 23 C -0.15 -2.16 9.72 22.36 0.22 -1.94 16 24 C -0.08 -0.80 10.18 22.47 0.23 -0.57 16 25 C -0.16 -2.00 10.11 22.36 0.23 -1.77 16 26 C 0.08 1.46 11.18 84.67 0.95 2.40 16 27 N -0.51 -13.58 10.27 -183.88 -1.89 -15.47 16 28 C 0.12 2.27 6.71 86.81 0.58 2.86 16 29 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 4.24 6.07 -2.38 -0.01 4.23 16 32 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.09 2.95 7.80 -2.39 -0.02 2.93 16 34 H 0.16 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.12 2.26 8.04 -2.39 -0.02 2.24 16 36 H 0.07 2.04 7.93 -2.39 -0.02 2.02 16 37 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 40 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 41 H 0.13 1.37 8.14 -2.38 -0.02 1.36 16 42 H 0.10 2.04 6.98 -2.39 -0.02 2.02 16 Total: -1.00 -83.12 362.35 4.59 -78.53 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.03 Total: 13.76 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 5.81 Total: 13.61 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -4.04 Total: -86.59 kcal Atomic # 8 Polarization: -64.55 SS G_CDS: -0.23 Total: -64.79 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -83.12 4.59 -78.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156058638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.280 kcal (2) G-P(sol) polarization free energy of solvation -83.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds