Wall clock time and date at job start Tue Mar 31 2020 12:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46772 * 2 1 4 4 C 1.50696 * 109.47287 * 119.99954 * 2 1 3 5 5 H 1.08002 * 120.00040 * 119.99675 * 4 2 1 6 6 C 1.37876 * 119.99732 * 300.00041 * 4 2 1 7 7 N 1.31513 * 119.99717 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00261 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47331 * 89.99968 * 8 6 4 10 10 H 1.48505 * 109.46965 * 210.00310 * 8 6 4 11 11 H 1.48499 * 109.46883 * 329.99507 * 8 6 4 12 12 O 1.45204 * 109.46693 * 240.00105 * 2 1 3 13 13 C 1.34225 * 116.99979 * 90.00324 * 12 2 1 14 14 O 1.20828 * 120.00184 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99940 * 179.97438 * 13 12 2 16 16 H 1.08995 * 110.88553 * 303.81017 * 15 13 12 17 17 C 1.54631 * 110.96667 * 67.61965 * 15 13 12 18 18 C 1.51284 * 104.19385 * 142.91721 * 17 15 13 19 19 O 1.21286 * 124.94229 * 163.74611 * 18 17 15 20 20 N 1.34621 * 110.15232 * 343.76674 * 18 17 15 21 21 C 1.46498 * 124.47196 * 179.53197 * 20 18 17 22 22 C 1.50700 * 109.47501 * 270.02709 * 21 20 18 23 23 C 1.38229 * 119.61714 * 94.99829 * 22 21 20 24 24 C 1.38619 * 119.16096 * 179.97438 * 23 22 21 25 25 C 1.38671 * 118.42351 * 359.97438 * 24 23 22 26 26 C 1.38188 * 119.15966 * 0.02562 * 25 24 23 27 27 N 1.31853 * 119.61661 * 274.72504 * 22 21 20 28 28 C 1.46768 * 111.17925 * 359.56068 * 20 18 17 29 29 H 1.08996 * 109.47212 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46762 * 300.00255 * 1 2 3 31 31 H 1.09004 * 109.47197 * 59.99779 * 1 2 3 32 32 H 0.97007 * 120.00148 * 179.97438 * 7 6 4 33 33 H 1.09000 * 110.48694 * 261.59435 * 17 15 13 34 34 H 1.08994 * 110.49106 * 24.24104 * 17 15 13 35 35 H 1.09002 * 109.46674 * 30.03137 * 21 20 18 36 36 H 1.08998 * 109.46665 * 150.02301 * 21 20 18 37 37 H 1.08007 * 120.41941 * 0.02562 * 23 22 21 38 38 H 1.08000 * 120.79111 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.42297 * 179.97438 * 25 24 23 40 40 H 1.08002 * 119.61638 * 179.97438 * 26 25 24 41 41 H 1.09002 * 110.24468 * 258.00978 * 28 20 18 42 42 H 1.09002 * 110.24463 * 136.09736 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5564 8 14 0.6259 1.2799 2.6541 9 1 -0.8019 0.8746 2.6992 10 1 0.9774 1.9954 3.9070 11 1 0.8493 2.1774 1.4923 12 8 2.0139 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2811 14 8 1.9974 1.2517 -2.2506 15 6 2.7192 -0.5770 -3.5492 16 1 3.6562 -1.1051 -3.3730 17 6 1.6545 -1.5243 -4.1494 18 6 1.7935 -1.3387 -5.6444 19 8 1.3447 -2.0918 -6.4826 20 7 2.4881 -0.2165 -5.9099 21 6 2.8138 0.2579 -7.2571 22 6 4.1363 -0.3221 -7.6880 23 6 4.1610 -1.4789 -8.4443 24 6 5.3827 -2.0038 -8.8359 25 6 6.5392 -1.3425 -8.4509 26 6 6.4361 -0.1906 -7.6946 27 7 5.2562 0.2827 -7.3437 28 6 2.8779 0.4708 -4.6731 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.9033 -0.5279 4.4375 33 1 1.8635 -2.5576 -3.8722 34 1 0.6568 -1.2344 -3.8202 35 1 2.0351 -0.0577 -7.9515 36 1 2.8781 1.3460 -7.2534 37 1 3.2401 -1.9670 -8.7273 38 1 5.4328 -2.9064 -9.4268 39 1 7.5083 -1.7234 -8.7378 40 1 7.3320 0.3301 -7.3903 41 1 2.2211 1.3215 -4.4912 42 1 3.9145 0.8020 -4.7363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156058878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:45 Heat of formation + Delta-G solvation = -73.458650 kcal Electronic energy + Delta-G solvation = -26171.125671 eV Core-core repulsion = 22309.761539 eV Total energy + Delta-G solvation = -3861.364132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08437 -40.29799 -39.44864 -36.71165 -35.88866 -34.10989 -33.24283 -32.71221 -31.32479 -30.58053 -27.86208 -27.17992 -25.34398 -24.11172 -23.77446 -22.50504 -21.40026 -19.79761 -19.57498 -17.85681 -17.27977 -17.09216 -16.62322 -16.54687 -16.36063 -15.81243 -15.62289 -15.26025 -14.94625 -14.38348 -14.27203 -13.80554 -13.71639 -13.54633 -13.49975 -12.97945 -12.91628 -12.74817 -12.36091 -12.33264 -12.07281 -11.95102 -11.74763 -11.51279 -11.35762 -10.94728 -10.32677 -10.26599 -10.19265 -9.95728 -9.86339 -9.84847 -9.64399 -9.38192 -9.19370 -8.93813 -8.73890 -6.27271 -4.30325 0.70350 0.95672 2.37551 2.58721 2.69740 3.15148 3.24260 3.27942 3.29420 3.58349 3.91626 4.15395 4.22079 4.24918 4.40240 4.53670 4.71367 4.75843 4.79209 4.85961 5.03784 5.07148 5.12068 5.33112 5.34829 5.41371 5.44068 5.49740 5.68425 5.79033 5.80991 5.85853 6.08236 6.20209 6.22214 6.32937 6.35369 6.52081 6.84293 6.94969 7.26146 7.43501 7.65638 7.94262 8.11838 8.47675 8.79184 9.29220 10.84759 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024451 B = 0.002726 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.882029 B =10267.873100 C =10568.396079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.191 3.809 3 H 0.047 0.953 4 C -0.527 4.527 5 H 0.088 0.912 6 C 0.080 3.920 7 N -0.887 5.887 8 Si 0.879 3.121 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.262 1.262 12 O -0.335 6.335 13 C 0.466 3.534 14 O -0.515 6.515 15 C -0.098 4.098 16 H 0.125 0.875 17 C -0.140 4.140 18 C 0.523 3.477 19 O -0.528 6.528 20 N -0.612 5.612 21 C 0.179 3.821 22 C 0.103 3.897 23 C -0.150 4.150 24 C -0.078 4.078 25 C -0.171 4.171 26 C 0.097 3.903 27 N -0.471 5.471 28 C 0.115 3.885 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.270 0.730 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.157 0.843 41 H 0.096 0.904 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.279 0.517 -24.316 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.137 3.863 3 H 0.065 0.935 4 C -0.565 4.565 5 H 0.106 0.894 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.708 3.292 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.187 1.187 12 O -0.250 6.250 13 C 0.308 3.692 14 O -0.405 6.405 15 C -0.117 4.117 16 H 0.143 0.857 17 C -0.180 4.180 18 C 0.312 3.688 19 O -0.405 6.405 20 N -0.346 5.346 21 C 0.056 3.944 22 C -0.036 4.036 23 C -0.170 4.170 24 C -0.104 4.104 25 C -0.191 4.191 26 C -0.060 4.060 27 N -0.181 5.181 28 C -0.008 4.008 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.174 0.826 41 H 0.114 0.886 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.916 1.257 -24.051 24.581 hybrid contribution -0.355 0.031 -0.103 0.371 sum 4.562 1.288 -24.154 24.615 Atomic orbital electron populations 1.22536 0.98369 1.01979 0.99919 1.20980 0.90533 0.94467 0.80274 0.93492 1.20769 1.33562 1.14927 0.87203 0.89428 1.24732 0.95629 0.96732 0.95240 1.69834 1.44610 1.39891 0.98039 0.86971 0.80772 0.83597 0.77846 1.19961 1.21644 1.18681 1.86516 1.75365 1.42594 1.20514 1.22781 0.74856 0.85753 0.85791 1.90618 1.48661 1.16667 1.84507 1.21833 1.01469 0.97480 0.90964 0.85714 1.22291 1.01024 1.02581 0.92084 1.20944 0.76702 0.79977 0.91225 1.90707 1.49968 1.46910 1.52880 1.48280 1.54945 1.25363 1.06047 1.20159 0.91417 0.99949 0.82854 1.21641 0.94562 0.92860 0.94496 1.22094 0.99401 0.96639 0.98866 1.21627 0.92298 0.99111 0.97337 1.22196 0.99605 0.97280 0.99984 1.22783 0.95463 0.93573 0.94171 1.67493 0.98202 1.32517 1.19873 1.22084 1.03183 0.94778 0.80709 0.91662 0.92455 0.94388 0.91995 0.86393 0.86942 0.88140 0.88188 0.84397 0.84747 0.84739 0.82578 0.88606 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 9.03 37.16 0.34 -3.40 16 2 C 0.19 4.61 2.15 -27.88 -0.06 4.55 16 3 H 0.05 1.20 6.21 -51.93 -0.32 0.87 16 4 C -0.53 -14.68 9.48 -34.44 -0.33 -15.01 16 5 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 6 C 0.08 2.25 5.45 -17.82 -0.10 2.16 16 7 N -0.89 -26.25 13.96 55.43 0.77 -25.47 16 8 Si 0.88 21.16 24.37 -169.99 -4.14 17.02 16 9 H -0.27 -6.31 6.87 56.52 0.39 -5.92 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.26 -6.18 6.53 56.52 0.37 -5.81 16 12 O -0.33 -7.09 9.86 -39.24 -0.39 -7.48 16 13 C 0.47 8.30 7.16 36.01 0.26 8.56 16 14 O -0.51 -10.27 14.72 -18.75 -0.28 -10.54 16 15 C -0.10 -1.26 3.66 -90.14 -0.33 -1.59 16 16 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 17 C -0.14 -1.69 6.41 -26.74 -0.17 -1.86 16 18 C 0.52 6.76 8.03 -10.77 -0.09 6.67 16 19 O -0.53 -8.13 17.60 5.55 0.10 -8.03 16 20 N -0.61 -6.90 2.92 -173.72 -0.51 -7.41 16 21 C 0.18 1.71 6.25 -5.19 -0.03 1.68 16 22 C 0.10 1.06 6.36 -82.59 -0.53 0.53 16 23 C -0.15 -1.40 9.72 -39.44 -0.38 -1.78 16 24 C -0.08 -0.60 10.18 -39.28 -0.40 -1.00 16 25 C -0.17 -1.24 10.11 -39.44 -0.40 -1.64 16 26 C 0.10 0.83 11.18 -17.55 -0.20 0.64 16 27 N -0.47 -5.00 10.27 -9.47 -0.10 -5.10 16 28 C 0.12 1.33 6.70 -3.12 -0.02 1.31 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.28 3.27 -51.93 -0.17 1.11 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.11 1.36 7.89 -51.93 -0.41 0.96 16 35 H 0.10 0.88 7.83 -51.93 -0.41 0.47 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 38 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.10 1.18 6.96 -51.93 -0.36 0.82 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -33.44 355.71 -7.12 -40.56 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.50 Total: 1.29 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.43 Total: -0.19 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.17 Total: -37.98 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.57 Total: -26.06 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.14 Total: 17.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.44 -7.12 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156058878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.901 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds