Wall clock time and date at job start Tue Mar 31 2020 12:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46772 * 2 1 4 4 C 1.50696 * 109.47287 * 119.99954 * 2 1 3 5 5 H 1.08002 * 120.00040 * 119.99675 * 4 2 1 6 6 C 1.37876 * 119.99732 * 300.00041 * 4 2 1 7 7 N 1.31513 * 119.99717 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00261 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47331 * 89.99968 * 8 6 4 10 10 H 1.48505 * 109.46965 * 210.00310 * 8 6 4 11 11 H 1.48499 * 109.46883 * 329.99507 * 8 6 4 12 12 O 1.45204 * 109.46693 * 240.00105 * 2 1 3 13 13 C 1.34225 * 116.99979 * 90.00324 * 12 2 1 14 14 O 1.20828 * 120.00184 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99940 * 179.97438 * 13 12 2 16 16 H 1.08995 * 110.88553 * 303.81017 * 15 13 12 17 17 C 1.54631 * 110.96667 * 67.61965 * 15 13 12 18 18 C 1.51284 * 104.19385 * 142.91721 * 17 15 13 19 19 O 1.21286 * 124.94229 * 163.74611 * 18 17 15 20 20 N 1.34621 * 110.15232 * 343.76674 * 18 17 15 21 21 C 1.46498 * 124.47196 * 179.53197 * 20 18 17 22 22 C 1.50700 * 109.47501 * 270.02709 * 21 20 18 23 23 C 1.38229 * 119.61714 * 94.99829 * 22 21 20 24 24 C 1.38619 * 119.16096 * 179.97438 * 23 22 21 25 25 C 1.38671 * 118.42351 * 359.97438 * 24 23 22 26 26 C 1.38188 * 119.15966 * 0.02562 * 25 24 23 27 27 N 1.31853 * 119.61661 * 274.72504 * 22 21 20 28 28 C 1.46768 * 111.17925 * 359.56068 * 20 18 17 29 29 H 1.08996 * 109.47212 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46762 * 300.00255 * 1 2 3 31 31 H 1.09004 * 109.47197 * 59.99779 * 1 2 3 32 32 H 0.97007 * 120.00148 * 179.97438 * 7 6 4 33 33 H 1.09000 * 110.48694 * 261.59435 * 17 15 13 34 34 H 1.08994 * 110.49106 * 24.24104 * 17 15 13 35 35 H 1.09002 * 109.46674 * 30.03137 * 21 20 18 36 36 H 1.08998 * 109.46665 * 150.02301 * 21 20 18 37 37 H 1.08007 * 120.41941 * 0.02562 * 23 22 21 38 38 H 1.08000 * 120.79111 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.42297 * 179.97438 * 25 24 23 40 40 H 1.08002 * 119.61638 * 179.97438 * 26 25 24 41 41 H 1.09002 * 110.24468 * 258.00978 * 28 20 18 42 42 H 1.09002 * 110.24463 * 136.09736 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5564 8 14 0.6259 1.2799 2.6541 9 1 -0.8019 0.8746 2.6992 10 1 0.9774 1.9954 3.9070 11 1 0.8493 2.1774 1.4923 12 8 2.0139 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2811 14 8 1.9974 1.2517 -2.2506 15 6 2.7192 -0.5770 -3.5492 16 1 3.6562 -1.1051 -3.3730 17 6 1.6545 -1.5243 -4.1494 18 6 1.7935 -1.3387 -5.6444 19 8 1.3447 -2.0918 -6.4826 20 7 2.4881 -0.2165 -5.9099 21 6 2.8138 0.2579 -7.2571 22 6 4.1363 -0.3221 -7.6880 23 6 4.1610 -1.4789 -8.4443 24 6 5.3827 -2.0038 -8.8359 25 6 6.5392 -1.3425 -8.4509 26 6 6.4361 -0.1906 -7.6946 27 7 5.2562 0.2827 -7.3437 28 6 2.8779 0.4708 -4.6731 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.9033 -0.5279 4.4375 33 1 1.8635 -2.5576 -3.8722 34 1 0.6568 -1.2344 -3.8202 35 1 2.0351 -0.0577 -7.9515 36 1 2.8781 1.3460 -7.2534 37 1 3.2401 -1.9670 -8.7273 38 1 5.4328 -2.9064 -9.4268 39 1 7.5083 -1.7234 -8.7378 40 1 7.3320 0.3301 -7.3903 41 1 2.2211 1.3215 -4.4912 42 1 3.9145 0.8020 -4.7363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156058878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:44 Heat of formation + Delta-G solvation = -94.672850 kcal Electronic energy + Delta-G solvation = -26172.045588 eV Core-core repulsion = 22309.761539 eV Total energy + Delta-G solvation = -3862.284048 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15989 -41.24232 -40.62553 -38.05900 -37.25196 -35.33634 -34.89690 -33.36080 -32.72240 -31.91579 -28.89756 -27.99596 -27.33183 -25.34511 -24.44334 -23.23212 -22.99681 -21.22683 -20.61023 -19.30720 -18.67558 -18.18908 -17.94367 -17.62836 -17.24182 -17.09993 -16.70365 -16.37449 -16.26323 -15.66165 -15.22325 -15.14058 -14.63683 -14.60883 -14.52375 -14.36118 -14.15882 -14.11428 -13.75201 -13.59650 -13.43999 -13.08172 -12.83947 -12.73238 -12.60859 -12.45392 -12.21489 -11.77951 -11.65682 -11.45607 -11.21905 -11.02854 -10.82913 -10.82460 -10.54596 -10.05282 -9.83232 -8.43329 -6.52322 0.05902 0.33335 1.14789 1.25839 1.33113 1.38430 1.42210 1.62856 2.00338 2.20889 2.89792 2.90976 3.08218 3.22689 3.30628 3.64439 3.70692 3.76109 4.01038 4.04756 4.13195 4.22195 4.26976 4.38871 4.40190 4.42834 4.52133 4.53059 4.56875 4.70617 4.73535 4.77559 4.81032 4.82983 5.18889 5.22402 5.26394 5.32077 5.34991 5.62732 5.75887 5.89777 6.13485 6.52521 6.81522 6.95655 7.00394 7.12481 8.72593 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024451 B = 0.002726 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.882029 B =10267.873100 C =10568.396079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.193 3.807 3 H 0.035 0.965 4 C -0.539 4.539 5 H 0.048 0.952 6 C 0.030 3.970 7 N -0.931 5.931 8 Si 0.940 3.060 9 H -0.252 1.252 10 H -0.286 1.286 11 H -0.254 1.254 12 O -0.346 6.346 13 C 0.467 3.533 14 O -0.534 6.534 15 C -0.087 4.087 16 H 0.143 0.857 17 C -0.136 4.136 18 C 0.524 3.476 19 O -0.555 6.555 20 N -0.605 5.605 21 C 0.176 3.824 22 C 0.087 3.913 23 C -0.163 4.163 24 C -0.082 4.082 25 C -0.165 4.165 26 C 0.084 3.916 27 N -0.495 5.495 28 C 0.124 3.876 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.275 0.725 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.091 0.909 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.263 1.213 -25.936 26.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.139 3.861 3 H 0.053 0.947 4 C -0.577 4.577 5 H 0.066 0.934 6 C -0.170 4.170 7 N -0.569 5.569 8 Si 0.765 3.235 9 H -0.178 1.178 10 H -0.213 1.213 11 H -0.178 1.178 12 O -0.262 6.262 13 C 0.311 3.689 14 O -0.424 6.424 15 C -0.106 4.106 16 H 0.161 0.839 17 C -0.176 4.176 18 C 0.313 3.687 19 O -0.434 6.434 20 N -0.338 5.338 21 C 0.054 3.946 22 C -0.052 4.052 23 C -0.183 4.183 24 C -0.108 4.108 25 C -0.185 4.185 26 C -0.073 4.073 27 N -0.205 5.205 28 C 0.001 3.999 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.182 0.818 40 H 0.194 0.806 41 H 0.109 0.891 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.908 1.964 -25.701 26.239 hybrid contribution -0.199 -0.240 0.315 0.443 sum 4.709 1.723 -25.386 25.877 Atomic orbital electron populations 1.22430 0.96222 1.02756 1.00875 1.20658 0.92065 0.93153 0.80209 0.94704 1.20966 1.33269 1.14021 0.89437 0.93384 1.25568 0.96910 0.99853 0.94688 1.69962 1.46257 1.41917 0.98805 0.85987 0.79813 0.79641 0.78051 1.17768 1.21268 1.17781 1.86505 1.75931 1.42992 1.20775 1.23576 0.73886 0.85538 0.85930 1.90607 1.49431 1.17625 1.84776 1.21852 1.02192 0.97917 0.88661 0.83910 1.22307 1.00774 1.02996 0.91565 1.20979 0.76548 0.80046 0.91164 1.90696 1.51278 1.47923 1.53511 1.48306 1.54129 1.24687 1.06664 1.20312 0.91703 1.00638 0.81897 1.21657 0.94597 0.93476 0.95440 1.22198 1.00146 0.96698 0.99295 1.21977 0.91879 0.99803 0.97111 1.22534 1.00761 0.96456 0.98718 1.23247 0.95535 0.94284 0.94265 1.67474 0.98895 1.33295 1.20820 1.22003 1.03597 0.94048 0.80266 0.91077 0.92731 0.92054 0.91579 0.85295 0.86810 0.87651 0.87030 0.84658 0.82459 0.81830 0.80603 0.89074 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.93 9.03 71.98 0.65 -6.28 16 2 C 0.19 9.25 2.15 29.85 0.06 9.32 16 3 H 0.04 1.76 6.21 -2.39 -0.01 1.74 16 4 C -0.54 -30.66 9.48 25.60 0.24 -30.41 16 5 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 6 C 0.03 1.67 5.45 84.65 0.46 2.14 16 7 N -0.93 -56.13 13.96 21.45 0.30 -55.83 16 8 Si 0.94 43.00 24.37 68.60 1.67 44.67 16 9 H -0.25 -10.68 6.87 99.48 0.68 -10.00 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.25 -11.19 6.53 99.48 0.65 -10.54 16 12 O -0.35 -14.54 9.86 -51.37 -0.51 -15.04 16 13 C 0.47 16.11 7.16 71.24 0.51 16.62 16 14 O -0.53 -20.66 14.72 21.96 0.32 -20.34 16 15 C -0.09 -2.10 3.66 -10.48 -0.04 -2.14 16 16 H 0.14 3.00 8.14 -2.39 -0.02 2.99 16 17 C -0.14 -3.10 6.41 30.59 0.20 -2.91 16 18 C 0.52 12.93 8.03 87.87 0.71 13.63 16 19 O -0.56 -16.69 17.60 -3.05 -0.05 -16.74 16 20 N -0.61 -12.85 2.92 -822.00 -2.40 -15.25 16 21 C 0.18 3.20 6.25 85.63 0.54 3.73 16 22 C 0.09 1.68 6.36 42.55 0.27 1.95 16 23 C -0.16 -2.88 9.72 22.36 0.22 -2.66 16 24 C -0.08 -1.11 10.18 22.46 0.23 -0.88 16 25 C -0.17 -1.98 10.11 22.36 0.23 -1.75 16 26 C 0.08 1.27 11.18 84.67 0.95 2.22 16 27 N -0.49 -9.85 10.27 -183.88 -1.89 -11.74 16 28 C 0.12 2.66 6.70 86.83 0.58 3.25 16 29 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.05 2.30 3.27 -2.39 -0.01 2.29 16 31 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 33 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.11 2.60 7.89 -2.39 -0.02 2.58 16 35 H 0.11 1.78 7.83 -2.39 -0.02 1.76 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.09 2.11 6.96 -2.39 -0.02 2.10 16 42 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -72.60 355.71 4.20 -68.41 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.96 Total: 16.05 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 5.80 Total: 5.83 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -3.99 Total: -82.83 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -0.24 Total: -52.13 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.67 Total: 44.67 kcal Total: -72.60 4.20 -68.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156058878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.268 kcal (2) G-P(sol) polarization free energy of solvation -72.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds