Wall clock time and date at job start Tue Mar 31 2020 12:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47371 * 119.99948 * 8 6 4 11 11 H 1.48496 * 109.47443 * 240.00340 * 8 6 4 12 12 O 1.45200 * 109.47046 * 120.00092 * 2 1 3 13 13 C 1.34226 * 116.99763 * 269.99575 * 12 2 1 14 14 O 1.20821 * 120.00149 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99734 * 179.97438 * 13 12 2 16 16 H 1.08995 * 110.85589 * 297.66225 * 15 13 12 17 17 C 1.54631 * 110.96836 * 61.45775 * 15 13 12 18 18 C 1.51283 * 104.19582 * 142.91349 * 17 15 13 19 19 O 1.21275 * 124.93971 * 163.78246 * 18 17 15 20 20 N 1.34419 * 110.11304 * 343.74730 * 18 17 15 21 21 C 1.46504 * 124.34509 * 179.56939 * 20 18 17 22 22 C 1.50704 * 109.46918 * 89.97755 * 21 20 18 23 23 C 1.38229 * 119.61768 * 94.99872 * 22 21 20 24 24 C 1.38626 * 119.15754 * 179.97438 * 23 22 21 25 25 C 1.38674 * 118.42369 * 0.02562 * 24 23 22 26 26 C 1.38185 * 119.16111 * 359.97438 * 25 24 23 27 27 N 1.31856 * 119.61541 * 274.72267 * 22 21 20 28 28 C 1.46764 * 111.30351 * 359.59299 * 20 18 17 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 33 33 H 1.09002 * 110.48367 * 261.59550 * 17 15 13 34 34 H 1.08996 * 110.48466 * 24.23557 * 17 15 13 35 35 H 1.09004 * 109.47045 * 209.97629 * 21 20 18 36 36 H 1.08999 * 109.47396 * 329.97433 * 21 20 18 37 37 H 1.08001 * 120.42170 * 359.97438 * 23 22 21 38 38 H 1.08000 * 120.78886 * 179.97438 * 24 23 22 39 39 H 1.07995 * 120.42513 * 179.97438 * 25 24 23 40 40 H 1.08000 * 119.61584 * 180.02562 * 26 25 24 41 41 H 1.09000 * 110.24070 * 258.01495 * 28 20 18 42 42 H 1.09006 * 110.24439 * 136.02001 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0640 2.2810 14 8 1.9975 1.2517 2.2505 15 6 2.7183 -0.5773 3.5495 16 1 2.0048 -1.3130 3.9205 17 6 4.1102 -1.2156 3.3343 18 6 4.8423 -0.9554 4.6324 19 8 5.8533 -1.5245 4.9857 20 7 4.2095 -0.0013 5.3368 21 6 4.6473 0.4861 6.6472 22 6 5.5904 1.6469 6.4619 23 6 5.1013 2.9389 6.5097 24 6 5.9773 3.9995 6.3386 25 6 7.3186 3.7198 6.1243 26 6 7.7344 2.4025 6.0893 27 7 6.8735 1.4184 6.2615 28 6 3.0235 0.4890 4.6247 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.7087 1.1612 -3.4844 33 1 4.0153 -2.2870 3.1579 34 1 4.6257 -0.7352 2.5028 35 1 3.7801 0.8107 7.2223 36 1 5.1580 -0.3154 7.1809 37 1 4.0499 3.1197 6.6782 38 1 5.6236 5.0194 6.3705 39 1 8.0292 4.5213 5.9866 40 1 8.7774 2.1763 5.9233 41 1 3.2362 1.4490 4.1543 42 1 2.1829 0.5830 5.3122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156058995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:49 Heat of formation + Delta-G solvation = -81.743024 kcal Electronic energy + Delta-G solvation = -26208.367545 eV Core-core repulsion = 22346.644176 eV Total energy + Delta-G solvation = -3861.723369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94808 -40.16962 -39.24667 -36.51521 -35.69462 -34.01288 -33.29594 -32.60485 -31.17599 -29.61039 -27.74946 -27.06932 -25.38370 -24.03842 -23.61274 -22.38766 -21.27214 -19.73856 -19.39987 -17.55047 -17.32901 -16.67953 -16.63819 -16.50450 -16.14116 -15.82586 -15.25436 -14.96537 -14.86945 -14.42926 -14.02228 -13.80171 -13.50498 -13.47347 -13.28510 -12.88427 -12.82796 -12.33376 -12.24139 -11.99735 -11.98002 -11.54071 -11.29237 -11.26161 -11.10439 -10.89229 -10.41895 -10.32938 -10.12746 -10.01513 -9.71195 -9.66959 -9.57556 -9.27273 -8.97048 -8.83973 -8.54719 -6.23539 -4.30587 0.79669 1.06463 2.59167 2.75458 2.80974 3.21282 3.27984 3.32124 3.46162 3.69816 4.02238 4.22279 4.28027 4.36834 4.49541 4.62639 4.76986 4.84991 4.88557 4.94486 5.09042 5.10253 5.21996 5.37051 5.43107 5.49819 5.54517 5.61010 5.82291 5.86595 5.89663 5.92603 6.34551 6.44379 6.55778 6.81204 6.83048 6.98289 7.06825 7.53409 7.65263 7.81575 7.85091 8.06936 8.14593 8.50898 8.80801 9.35365 10.83881 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.002892 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.215628 B = 9681.208861 C = 9849.943073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.350 6.350 13 C 0.464 3.536 14 O -0.516 6.516 15 C -0.097 4.097 16 H 0.125 0.875 17 C -0.140 4.140 18 C 0.523 3.477 19 O -0.513 6.513 20 N -0.618 5.618 21 C 0.179 3.821 22 C 0.103 3.897 23 C -0.158 4.158 24 C -0.077 4.077 25 C -0.172 4.172 26 C 0.098 3.902 27 N -0.461 5.461 28 C 0.115 3.885 29 H 0.038 0.962 30 H 0.016 0.984 31 H 0.100 0.900 32 H 0.266 0.734 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.090 0.910 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.801 3.832 19.268 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.560 4.560 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.265 6.265 13 C 0.306 3.694 14 O -0.406 6.406 15 C -0.117 4.117 16 H 0.143 0.857 17 C -0.181 4.181 18 C 0.310 3.690 19 O -0.388 6.388 20 N -0.353 5.353 21 C 0.057 3.943 22 C -0.036 4.036 23 C -0.178 4.178 24 C -0.103 4.103 25 C -0.192 4.192 26 C -0.059 4.059 27 N -0.170 5.170 28 C -0.008 4.008 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.108 0.892 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.491 3.124 19.291 20.592 hybrid contribution -0.180 0.904 -0.991 1.353 sum 6.312 4.028 18.300 19.772 Atomic orbital electron populations 1.22169 0.97437 1.00216 1.01475 1.20698 0.91464 0.93914 0.77634 0.93509 1.21065 1.32543 1.13553 0.88806 0.91143 1.24885 0.94875 0.95080 0.99115 1.69898 1.36054 1.22581 1.24154 0.86221 0.78665 0.79546 0.81745 1.19391 1.20691 1.20734 1.86492 1.75384 1.43488 1.21172 1.22712 0.75003 0.85758 0.85910 1.90614 1.48706 1.16718 1.84581 1.21838 0.98676 0.98845 0.92353 0.85671 1.22310 0.93790 1.04789 0.97177 1.20853 0.83828 0.78613 0.85680 1.90741 1.23436 1.51574 1.73025 1.48242 1.28104 1.39339 1.19576 1.20138 0.95886 0.94311 0.83993 1.21677 0.91647 0.94144 0.96118 1.22013 1.01159 0.93144 1.01482 1.21602 0.93352 0.99733 0.95628 1.22202 0.96876 0.98505 1.01589 1.22820 0.99549 0.88458 0.95075 1.67575 1.02852 1.36627 1.09922 1.22035 0.87556 0.97675 0.93485 0.94324 0.96484 0.88181 0.92408 0.86512 0.87012 0.88481 0.88089 0.84654 0.84706 0.84775 0.82737 0.89228 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 9.33 37.16 0.35 -3.43 16 2 C 0.22 5.55 2.56 -27.88 -0.07 5.47 16 3 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 4 C -0.52 -14.27 8.90 -34.44 -0.31 -14.58 16 5 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 8 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 O -0.35 -7.76 9.85 -39.25 -0.39 -8.14 16 13 C 0.46 8.71 7.15 36.01 0.26 8.97 16 14 O -0.52 -10.98 14.79 -18.75 -0.28 -11.26 16 15 C -0.10 -1.28 3.66 -90.14 -0.33 -1.61 16 16 H 0.13 1.32 8.14 -51.93 -0.42 0.89 16 17 C -0.14 -1.91 6.40 -26.74 -0.17 -2.08 16 18 C 0.52 7.66 8.02 -10.86 -0.09 7.58 16 19 O -0.51 -9.24 17.60 5.56 0.10 -9.14 16 20 N -0.62 -7.42 2.92 -173.78 -0.51 -7.93 16 21 C 0.18 1.82 6.24 -5.19 -0.03 1.79 16 22 C 0.10 1.19 6.36 -82.58 -0.53 0.66 16 23 C -0.16 -1.48 9.72 -39.44 -0.38 -1.86 16 24 C -0.08 -0.66 10.18 -39.28 -0.40 -1.06 16 25 C -0.17 -1.50 10.11 -39.44 -0.40 -1.90 16 26 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 27 N -0.46 -6.13 10.27 -9.47 -0.10 -6.23 16 28 C 0.12 1.31 6.66 -3.12 -0.02 1.29 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 2.63 6.07 -51.93 -0.32 2.31 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.11 1.67 7.89 -51.93 -0.41 1.26 16 35 H 0.10 0.63 8.04 -51.93 -0.42 0.21 16 36 H 0.10 1.11 7.93 -51.93 -0.41 0.70 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.09 1.19 7.06 -51.93 -0.37 0.82 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -34.08 362.58 -8.16 -42.23 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.64 Total: 1.69 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -2.41 Total: 1.69 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.02 Total: -38.28 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.57 Total: -28.55 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.08 -8.16 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156058995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.513 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds