Wall clock time and date at job start Tue Mar 31 2020 12:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47371 * 119.99948 * 8 6 4 11 11 H 1.48496 * 109.47443 * 240.00340 * 8 6 4 12 12 O 1.45200 * 109.47046 * 120.00092 * 2 1 3 13 13 C 1.34226 * 116.99763 * 269.99575 * 12 2 1 14 14 O 1.20821 * 120.00149 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99734 * 179.97438 * 13 12 2 16 16 H 1.08995 * 110.85589 * 297.66225 * 15 13 12 17 17 C 1.54631 * 110.96836 * 61.45775 * 15 13 12 18 18 C 1.51283 * 104.19582 * 142.91349 * 17 15 13 19 19 O 1.21275 * 124.93971 * 163.78246 * 18 17 15 20 20 N 1.34419 * 110.11304 * 343.74730 * 18 17 15 21 21 C 1.46504 * 124.34509 * 179.56939 * 20 18 17 22 22 C 1.50704 * 109.46918 * 89.97755 * 21 20 18 23 23 C 1.38229 * 119.61768 * 94.99872 * 22 21 20 24 24 C 1.38626 * 119.15754 * 179.97438 * 23 22 21 25 25 C 1.38674 * 118.42369 * 0.02562 * 24 23 22 26 26 C 1.38185 * 119.16111 * 359.97438 * 25 24 23 27 27 N 1.31856 * 119.61541 * 274.72267 * 22 21 20 28 28 C 1.46764 * 111.30351 * 359.59299 * 20 18 17 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 33 33 H 1.09002 * 110.48367 * 261.59550 * 17 15 13 34 34 H 1.08996 * 110.48466 * 24.23557 * 17 15 13 35 35 H 1.09004 * 109.47045 * 209.97629 * 21 20 18 36 36 H 1.08999 * 109.47396 * 329.97433 * 21 20 18 37 37 H 1.08001 * 120.42170 * 359.97438 * 23 22 21 38 38 H 1.08000 * 120.78886 * 179.97438 * 24 23 22 39 39 H 1.07995 * 120.42513 * 179.97438 * 25 24 23 40 40 H 1.08000 * 119.61584 * 180.02562 * 26 25 24 41 41 H 1.09000 * 110.24070 * 258.01495 * 28 20 18 42 42 H 1.09006 * 110.24439 * 136.02001 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0640 2.2810 14 8 1.9975 1.2517 2.2505 15 6 2.7183 -0.5773 3.5495 16 1 2.0048 -1.3130 3.9205 17 6 4.1102 -1.2156 3.3343 18 6 4.8423 -0.9554 4.6324 19 8 5.8533 -1.5245 4.9857 20 7 4.2095 -0.0013 5.3368 21 6 4.6473 0.4861 6.6472 22 6 5.5904 1.6469 6.4619 23 6 5.1013 2.9389 6.5097 24 6 5.9773 3.9995 6.3386 25 6 7.3186 3.7198 6.1243 26 6 7.7344 2.4025 6.0893 27 7 6.8735 1.4184 6.2615 28 6 3.0235 0.4890 4.6247 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.7087 1.1612 -3.4844 33 1 4.0153 -2.2870 3.1579 34 1 4.6257 -0.7352 2.5028 35 1 3.7801 0.8107 7.2223 36 1 5.1580 -0.3154 7.1809 37 1 4.0499 3.1197 6.6782 38 1 5.6236 5.0194 6.3705 39 1 8.0292 4.5213 5.9866 40 1 8.7774 2.1763 5.9233 41 1 3.2362 1.4490 4.1543 42 1 2.1829 0.5830 5.3122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156058995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:48 Heat of formation + Delta-G solvation = -102.732409 kcal Electronic energy + Delta-G solvation = -26209.277713 eV Core-core repulsion = 22346.644176 eV Total energy + Delta-G solvation = -3862.633537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.08037 -41.17443 -40.57220 -37.93552 -37.19445 -35.36835 -34.86915 -33.34985 -32.17762 -31.47011 -28.85470 -27.95076 -27.43660 -25.26648 -24.42253 -23.23060 -22.91606 -21.20979 -20.54436 -19.03777 -18.49122 -18.24375 -17.76702 -17.51082 -17.33434 -16.79328 -16.69332 -16.33849 -16.18903 -15.80420 -15.05769 -14.89291 -14.71585 -14.56205 -14.28079 -14.08088 -14.05266 -13.84918 -13.72038 -13.16667 -13.05192 -13.01245 -12.82157 -12.71081 -12.50682 -12.45047 -12.36306 -12.15060 -11.57845 -11.46571 -10.98975 -10.95109 -10.82894 -10.59372 -10.46715 -10.03722 -9.80789 -8.28892 -6.44789 0.06400 0.35264 1.25394 1.42186 1.42695 1.45800 1.55747 1.73983 2.08183 2.40432 2.92017 3.02272 3.13606 3.28363 3.36167 3.70828 3.80289 3.81261 3.99692 4.13412 4.16083 4.22090 4.37947 4.43297 4.54531 4.55823 4.57802 4.72368 4.76327 4.81380 4.81854 4.85733 4.86912 5.16441 5.18801 5.24606 5.42609 5.50539 5.66060 5.76367 5.93042 5.95476 6.09082 6.60031 6.92781 7.04527 7.06640 7.27060 8.78646 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.002892 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.215628 B = 9681.208861 C = 9849.943073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.009 0.991 4 C -0.548 4.548 5 H 0.067 0.933 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.978 3.022 9 H -0.264 1.264 10 H -0.271 1.271 11 H -0.278 1.278 12 O -0.357 6.357 13 C 0.461 3.539 14 O -0.542 6.542 15 C -0.083 4.083 16 H 0.165 0.835 17 C -0.139 4.139 18 C 0.520 3.480 19 O -0.554 6.554 20 N -0.607 5.607 21 C 0.176 3.824 22 C 0.079 3.921 23 C -0.158 4.158 24 C -0.083 4.083 25 C -0.169 4.169 26 C 0.074 3.926 27 N -0.505 5.505 28 C 0.121 3.879 29 H 0.046 0.954 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.270 0.730 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.087 0.913 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.072 0.928 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.961 4.103 20.226 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.027 0.973 4 C -0.585 4.585 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.802 3.198 9 H -0.188 1.188 10 H -0.197 1.197 11 H -0.203 1.203 12 O -0.273 6.273 13 C 0.305 3.695 14 O -0.433 6.433 15 C -0.102 4.102 16 H 0.182 0.818 17 C -0.180 4.180 18 C 0.308 3.692 19 O -0.432 6.432 20 N -0.340 5.340 21 C 0.055 3.945 22 C -0.060 4.060 23 C -0.178 4.178 24 C -0.109 4.109 25 C -0.188 4.188 26 C -0.083 4.083 27 N -0.215 5.215 28 C -0.002 4.002 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.110 0.890 35 H 0.159 0.841 36 H 0.105 0.895 37 H 0.180 0.820 38 H 0.181 0.819 39 H 0.179 0.821 40 H 0.182 0.818 41 H 0.090 0.910 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.634 3.420 20.282 21.326 hybrid contribution 0.123 0.933 -1.224 1.544 sum 5.756 4.353 19.058 20.379 Atomic orbital electron populations 1.21983 0.96478 1.00556 1.01044 1.20351 0.92165 0.92009 0.78987 0.97282 1.21348 1.33243 1.13862 0.90058 0.91487 1.25759 0.94766 0.95662 1.02011 1.70007 1.36611 1.23619 1.25108 0.85202 0.78363 0.78467 0.77810 1.18850 1.19660 1.20311 1.86476 1.75871 1.43616 1.21347 1.23730 0.73922 0.85535 0.86317 1.90603 1.49756 1.18010 1.84956 1.21936 0.98787 0.99815 0.89654 0.81794 1.22285 0.93807 1.05630 0.96238 1.20952 0.83386 0.78940 0.85955 1.90719 1.25187 1.53376 1.73937 1.48279 1.27654 1.38130 1.19940 1.20412 0.97344 0.93735 0.83051 1.21925 0.91377 0.95444 0.97251 1.22333 1.02652 0.92405 1.00378 1.22051 0.93185 1.01040 0.94638 1.22520 0.97822 0.98305 1.00187 1.23138 0.99997 0.89266 0.95882 1.67519 1.04233 1.38294 1.11439 1.22114 0.88504 0.95876 0.93672 0.93448 0.95163 0.90285 0.92033 0.85101 0.88972 0.84124 0.89486 0.81997 0.81858 0.82118 0.81844 0.91020 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.98 9.33 71.98 0.67 -6.31 16 2 C 0.22 11.44 2.56 29.85 0.08 11.52 16 3 H 0.01 0.55 7.16 -2.39 -0.02 0.54 16 4 C -0.55 -30.31 8.90 25.60 0.23 -30.08 16 5 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 6 C 0.02 0.97 5.30 84.65 0.45 1.41 16 7 N -0.92 -51.45 11.32 21.44 0.24 -51.21 16 8 Si 0.98 42.38 29.54 68.60 2.03 44.41 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 O -0.36 -15.85 9.85 -51.38 -0.51 -16.36 16 13 C 0.46 17.00 7.15 71.24 0.51 17.51 16 14 O -0.54 -23.03 14.79 21.98 0.33 -22.70 16 15 C -0.08 -2.00 3.66 -10.48 -0.04 -2.04 16 16 H 0.16 2.79 8.14 -2.39 -0.02 2.77 16 17 C -0.14 -3.71 6.40 30.59 0.20 -3.51 16 18 C 0.52 15.04 8.02 87.90 0.71 15.74 16 19 O -0.55 -20.38 17.60 -3.01 -0.05 -20.43 16 20 N -0.61 -13.56 2.92 -822.30 -2.40 -15.95 16 21 C 0.18 3.28 6.24 85.63 0.53 3.81 16 22 C 0.08 1.73 6.36 42.55 0.27 2.00 16 23 C -0.16 -2.60 9.72 22.36 0.22 -2.38 16 24 C -0.08 -1.24 10.18 22.47 0.23 -1.01 16 25 C -0.17 -2.72 10.11 22.36 0.23 -2.49 16 26 C 0.07 1.60 11.18 84.67 0.95 2.54 16 27 N -0.50 -13.65 10.27 -183.88 -1.89 -15.54 16 28 C 0.12 2.42 6.66 86.83 0.58 3.00 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.08 4.20 6.07 -2.39 -0.01 4.19 16 32 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.09 2.83 7.89 -2.39 -0.02 2.81 16 35 H 0.14 1.30 8.04 -2.38 -0.02 1.28 16 36 H 0.09 1.88 7.93 -2.39 -0.02 1.86 16 37 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.07 1.77 7.06 -2.39 -0.02 1.76 16 42 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -76.90 362.58 4.58 -72.32 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.03 Total: 15.74 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.80 Total: 9.73 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -4.04 Total: -82.70 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -0.23 Total: -59.49 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -76.90 4.58 -72.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156058995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.412 kcal (2) G-P(sol) polarization free energy of solvation -76.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds