Wall clock time and date at job start Tue Mar 31 2020 12:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.44895 * 2 1 4 4 O 1.43003 * 109.42185 * 119.92365 * 2 1 3 5 5 C 1.35683 * 116.73470 * 166.42376 * 4 2 1 6 6 C 1.39417 * 119.55405 * 327.21214 * 5 4 2 7 7 C 1.38396 * 120.06720 * 179.89711 * 6 5 4 8 8 C 1.38580 * 120.16200 * 0.05031 * 7 6 5 9 9 C 1.37774 * 120.41494 * 359.65865 * 8 7 6 10 10 C 1.39787 * 120.71694 * 147.14056 * 5 4 2 11 11 C 1.47545 * 120.23340 * 0.08455 * 10 5 4 12 12 O 1.21590 * 119.99903 * 0.02562 * 11 10 5 13 13 N 1.34779 * 119.99800 * 180.02562 * 11 10 5 14 14 C 1.46499 * 119.99872 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46840 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46616 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47104 * 119.99966 * 21 19 17 24 24 H 1.48489 * 109.47200 * 240.00246 * 21 19 17 25 25 N 1.40249 * 119.21630 * 359.87610 * 6 5 4 26 26 C 1.35092 * 118.95737 * 15.49345 * 25 6 5 27 27 O 1.21298 * 120.14100 * 181.69115 * 26 25 6 28 28 H 1.09005 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46864 * 299.93626 * 1 2 3 30 30 H 1.09000 * 109.47458 * 59.93576 * 1 2 3 31 31 H 1.08004 * 119.91410 * 180.02562 * 7 6 5 32 32 H 1.08005 * 119.78929 * 179.97438 * 8 7 6 33 33 H 1.08004 * 119.94888 * 180.30430 * 9 8 7 34 34 H 0.97005 * 119.99680 * 0.02562 * 13 11 10 35 35 H 1.09001 * 109.46813 * 60.00258 * 14 13 11 36 36 H 1.08992 * 109.47397 * 300.00319 * 14 13 11 37 37 H 1.09002 * 109.47398 * 300.00326 * 15 14 13 38 38 H 1.09001 * 109.47194 * 60.00507 * 15 14 13 39 39 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 40 40 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 41 41 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 42 42 H 0.97001 * 120.51978 * 195.47709 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0055 -0.6728 1.1689 5 6 3.3194 -1.0111 1.1864 6 6 3.9576 -1.3524 -0.0052 7 6 5.2979 -1.6971 0.0001 8 6 6.0100 -1.7054 1.1889 9 6 5.3941 -1.3646 2.3733 10 6 4.0386 -1.0194 2.3850 11 6 3.3743 -0.6604 3.6526 12 8 2.1970 -0.3563 3.6571 13 7 4.0724 -0.6694 4.8054 14 6 3.4127 -0.3135 6.0641 15 6 4.4207 -0.4038 7.2115 16 6 3.7316 -0.0327 8.5262 17 6 4.7245 -0.1210 9.6563 18 1 5.7452 -0.4122 9.4568 19 6 4.3303 0.1710 10.9448 20 7 3.0875 0.5262 11.1877 21 14 5.5609 0.0609 12.3458 22 1 6.8820 -0.3577 11.8123 23 1 5.6892 1.3891 12.9976 24 1 5.0902 -0.9355 13.3410 25 7 3.2254 -1.3416 -1.2013 26 6 2.0319 -0.7094 -1.2320 27 8 1.3667 -0.7129 -2.2462 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5129 0.8906 30 1 -0.3634 0.5148 -0.8894 31 1 5.7899 -1.9607 -0.9245 32 1 7.0556 -1.9758 1.1862 33 1 5.9575 -1.3689 3.2947 34 1 5.0117 -0.9116 4.8017 35 1 2.5886 -1.0025 6.2498 36 1 3.0276 0.7039 5.9975 37 1 4.8054 -1.4215 7.2780 38 1 5.2450 0.2849 7.0260 39 1 3.3465 0.9849 8.4599 40 1 2.9075 -0.7216 8.7115 41 1 2.8102 0.7320 12.0941 42 1 3.5707 -1.7809 -1.9943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171512391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:17 Heat of formation + Delta-G solvation = -88.228329 kcal Electronic energy + Delta-G solvation = -25680.341268 eV Core-core repulsion = 21818.336675 eV Total energy + Delta-G solvation = -3862.004593 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.95382 -39.90850 -38.67487 -37.92073 -35.55505 -35.38480 -33.34268 -32.44784 -31.59899 -30.48821 -29.39287 -26.86761 -25.36296 -24.29828 -23.70498 -22.75274 -20.84857 -20.41763 -19.95369 -19.33687 -18.21127 -17.48070 -16.82260 -16.63524 -16.23797 -15.67338 -15.43945 -15.33711 -15.00056 -14.78406 -14.68044 -14.42992 -13.88276 -13.68659 -13.41589 -13.22298 -12.73900 -12.49278 -12.43987 -12.28566 -11.97047 -11.81276 -11.74267 -11.54909 -11.21798 -10.92850 -10.74136 -10.58315 -10.42635 -9.89374 -9.87920 -9.39860 -9.16411 -9.11493 -8.74358 -8.40453 -8.38357 -6.02790 -4.05841 0.38722 0.64987 1.82530 2.26892 2.75098 2.85335 3.21915 3.29235 3.36904 3.40120 3.55388 3.58384 4.15846 4.36488 4.43351 4.47493 4.56134 4.65041 4.74449 4.86082 5.12952 5.33165 5.37711 5.42718 5.47527 5.57412 5.71576 5.77405 5.80537 5.88032 5.98406 6.15191 6.16539 6.32044 6.46045 6.58968 6.81379 6.91412 6.99067 7.32522 7.63018 7.67974 7.75351 7.96140 8.35086 8.39057 9.01143 9.58463 11.08535 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.002293 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.677535 B =12208.981998 C =13245.695519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 H 0.106 0.894 4 O -0.266 6.266 5 C 0.137 3.863 6 C 0.078 3.922 7 C -0.101 4.101 8 C -0.118 4.118 9 C -0.077 4.077 10 C -0.122 4.122 11 C 0.551 3.449 12 O -0.517 6.517 13 N -0.721 5.721 14 C 0.118 3.882 15 C -0.121 4.121 16 C 0.023 3.977 17 C -0.521 4.521 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 N -0.660 5.660 26 C 0.493 3.507 27 O -0.506 6.506 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.396 0.604 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.835 -3.864 -26.455 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.015 3.985 3 H 0.123 0.877 4 O -0.178 6.178 5 C 0.088 3.912 6 C -0.017 4.017 7 C -0.122 4.122 8 C -0.137 4.137 9 C -0.096 4.096 10 C -0.127 4.127 11 C 0.336 3.664 12 O -0.393 6.393 13 N -0.373 5.373 14 C -0.005 4.005 15 C -0.159 4.159 16 C -0.015 4.015 17 C -0.560 4.560 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 N -0.307 5.307 26 C 0.280 3.720 27 O -0.380 6.380 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.231 0.769 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.171 -3.509 -26.596 27.013 hybrid contribution 1.533 -0.403 0.293 1.612 sum 4.705 -3.912 -26.302 27.005 Atomic orbital electron populations 1.21705 0.88569 1.04519 1.04316 1.22742 0.98664 0.96389 0.80735 0.87652 1.86520 1.20016 1.72747 1.38564 1.18549 0.83831 0.97458 0.91401 1.17944 0.92842 1.05839 0.85114 1.20782 0.90799 1.00856 0.99744 1.20903 1.00603 1.00987 0.91203 1.21292 0.92336 0.96726 0.99275 1.19589 0.93542 1.06908 0.92633 1.17883 0.86630 0.78707 0.83164 1.90839 1.15057 1.47031 1.86400 1.46115 1.14107 1.69608 1.07491 1.21671 0.96630 1.00751 0.81414 1.21894 0.97571 1.00991 0.95436 1.19035 0.95924 0.97143 0.89350 1.21235 0.96500 1.46119 0.92127 0.92590 1.25037 0.95226 0.95288 0.98971 1.69978 1.16247 1.46420 1.20606 0.86529 0.81430 0.77666 0.82317 1.19766 1.21015 1.21007 1.43722 1.20118 1.54532 1.12366 1.21699 0.80369 0.78860 0.91061 1.90787 1.55064 1.58808 1.33359 0.91052 0.89551 0.89133 0.84545 0.84244 0.84174 0.76894 0.91577 0.91587 0.92682 0.92690 0.96243 0.96228 0.92974 0.74468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.14 37.16 0.34 -0.90 16 2 C 0.07 0.78 3.68 -27.85 -0.10 0.67 16 3 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 4 O -0.27 -3.53 8.20 -40.45 -0.33 -3.87 16 5 C 0.14 1.61 6.45 -38.56 -0.25 1.37 16 6 C 0.08 0.70 6.54 -83.51 -0.55 0.15 16 7 C -0.10 -0.63 9.94 -39.40 -0.39 -1.03 16 8 C -0.12 -0.71 10.02 -39.63 -0.40 -1.11 16 9 C -0.08 -0.61 9.54 -39.14 -0.37 -0.99 16 10 C -0.12 -1.43 5.88 -104.91 -0.62 -2.05 16 11 C 0.55 8.28 7.77 -12.46 -0.10 8.18 16 12 O -0.52 -9.76 15.20 -16.41 -0.25 -10.01 16 13 N -0.72 -10.00 5.51 -61.35 -0.34 -10.33 16 14 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16 15 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 16 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 17 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 N -0.66 -5.58 5.48 -9.67 -0.05 -5.63 16 26 C 0.49 5.22 7.65 -10.81 -0.08 5.14 16 27 O -0.51 -6.45 17.01 5.54 0.09 -6.35 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.73 7.86 -51.93 -0.41 0.32 16 31 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 32 H 0.14 0.46 8.06 -52.48 -0.42 0.03 16 33 H 0.14 0.83 6.41 -52.48 -0.34 0.49 16 34 H 0.40 4.21 6.51 -40.82 -0.27 3.95 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.42 2.51 8.89 -40.82 -0.36 2.14 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -35.09 357.73 -8.57 -43.66 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.56 Total: 0.52 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.23 Total: -3.72 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.35 Total: -41.83 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.49 Total: -20.23 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.09 -8.57 -43.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171512391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.573 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds