Wall clock time and date at job start Tue Mar 31 2020 12:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.44895 * 2 1 4 4 O 1.43003 * 109.42185 * 119.92365 * 2 1 3 5 5 C 1.35683 * 116.73470 * 166.42376 * 4 2 1 6 6 C 1.39417 * 119.55405 * 327.21214 * 5 4 2 7 7 C 1.38396 * 120.06720 * 179.89711 * 6 5 4 8 8 C 1.38580 * 120.16200 * 0.05031 * 7 6 5 9 9 C 1.37774 * 120.41494 * 359.65865 * 8 7 6 10 10 C 1.39787 * 120.71694 * 147.14056 * 5 4 2 11 11 C 1.47545 * 120.23340 * 0.08455 * 10 5 4 12 12 O 1.21590 * 119.99903 * 0.02562 * 11 10 5 13 13 N 1.34779 * 119.99800 * 180.02562 * 11 10 5 14 14 C 1.46499 * 119.99872 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46840 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46616 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47104 * 119.99966 * 21 19 17 24 24 H 1.48489 * 109.47200 * 240.00246 * 21 19 17 25 25 N 1.40249 * 119.21630 * 359.87610 * 6 5 4 26 26 C 1.35092 * 118.95737 * 15.49345 * 25 6 5 27 27 O 1.21298 * 120.14100 * 181.69115 * 26 25 6 28 28 H 1.09005 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46864 * 299.93626 * 1 2 3 30 30 H 1.09000 * 109.47458 * 59.93576 * 1 2 3 31 31 H 1.08004 * 119.91410 * 180.02562 * 7 6 5 32 32 H 1.08005 * 119.78929 * 179.97438 * 8 7 6 33 33 H 1.08004 * 119.94888 * 180.30430 * 9 8 7 34 34 H 0.97005 * 119.99680 * 0.02562 * 13 11 10 35 35 H 1.09001 * 109.46813 * 60.00258 * 14 13 11 36 36 H 1.08992 * 109.47397 * 300.00319 * 14 13 11 37 37 H 1.09002 * 109.47398 * 300.00326 * 15 14 13 38 38 H 1.09001 * 109.47194 * 60.00507 * 15 14 13 39 39 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 40 40 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 41 41 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 42 42 H 0.97001 * 120.51978 * 195.47709 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0055 -0.6728 1.1689 5 6 3.3194 -1.0111 1.1864 6 6 3.9576 -1.3524 -0.0052 7 6 5.2979 -1.6971 0.0001 8 6 6.0100 -1.7054 1.1889 9 6 5.3941 -1.3646 2.3733 10 6 4.0386 -1.0194 2.3850 11 6 3.3743 -0.6604 3.6526 12 8 2.1970 -0.3563 3.6571 13 7 4.0724 -0.6694 4.8054 14 6 3.4127 -0.3135 6.0641 15 6 4.4207 -0.4038 7.2115 16 6 3.7316 -0.0327 8.5262 17 6 4.7245 -0.1210 9.6563 18 1 5.7452 -0.4122 9.4568 19 6 4.3303 0.1710 10.9448 20 7 3.0875 0.5262 11.1877 21 14 5.5609 0.0609 12.3458 22 1 6.8820 -0.3577 11.8123 23 1 5.6892 1.3891 12.9976 24 1 5.0902 -0.9355 13.3410 25 7 3.2254 -1.3416 -1.2013 26 6 2.0319 -0.7094 -1.2320 27 8 1.3667 -0.7129 -2.2462 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5129 0.8906 30 1 -0.3634 0.5148 -0.8894 31 1 5.7899 -1.9607 -0.9245 32 1 7.0556 -1.9758 1.1862 33 1 5.9575 -1.3689 3.2947 34 1 5.0117 -0.9116 4.8017 35 1 2.5886 -1.0025 6.2498 36 1 3.0276 0.7039 5.9975 37 1 4.8054 -1.4215 7.2780 38 1 5.2450 0.2849 7.0260 39 1 3.3465 0.9849 8.4599 40 1 2.9075 -0.7216 8.7115 41 1 2.8102 0.7320 12.0941 42 1 3.5707 -1.7809 -1.9943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171512391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:16 Heat of formation + Delta-G solvation = -112.693604 kcal Electronic energy + Delta-G solvation = -25681.402162 eV Core-core repulsion = 21818.336675 eV Total energy + Delta-G solvation = -3863.065487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.71792 -40.91522 -39.64686 -38.67409 -36.92727 -36.28460 -35.17059 -33.21795 -33.14567 -31.51645 -30.07966 -28.57652 -26.22648 -25.52114 -24.46961 -24.09611 -22.30748 -21.62940 -20.72313 -20.19142 -19.11728 -18.49685 -18.24076 -17.70641 -17.27335 -16.77132 -16.68907 -16.42371 -16.09465 -15.89418 -15.60415 -15.52480 -15.15239 -14.89279 -14.28804 -14.15109 -13.97262 -13.73849 -13.48707 -13.38386 -13.24966 -13.11746 -12.76391 -12.65174 -12.49636 -12.33751 -12.27790 -11.94710 -11.64461 -11.57352 -11.26246 -11.18045 -10.82624 -10.54221 -10.15298 -9.75317 -9.09640 -8.17589 -6.28853 -0.31882 -0.03994 1.07148 1.43683 1.43742 1.56367 1.57045 1.86130 2.10473 2.13518 2.44275 2.72522 2.80780 3.16517 3.45643 3.62794 3.77119 3.83509 3.93875 4.17568 4.21856 4.24903 4.25546 4.49096 4.58102 4.64541 4.68605 4.86348 4.97499 5.00135 5.01801 5.05713 5.20333 5.30549 5.37185 5.44414 5.55502 5.59404 5.63390 5.73661 5.86850 6.15278 6.24388 6.58925 6.62260 6.89422 7.25757 7.40867 8.94828 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.002293 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.677535 B =12208.981998 C =13245.695519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.067 3.933 3 H 0.116 0.884 4 O -0.296 6.296 5 C 0.108 3.892 6 C 0.067 3.933 7 C -0.079 4.079 8 C -0.105 4.105 9 C -0.069 4.069 10 C -0.149 4.149 11 C 0.547 3.453 12 O -0.568 6.568 13 N -0.708 5.708 14 C 0.131 3.869 15 C -0.101 4.101 16 C 0.022 3.978 17 C -0.537 4.537 18 H 0.069 0.931 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.281 1.281 24 H -0.281 1.281 25 N -0.647 5.647 26 C 0.495 3.505 27 O -0.534 6.534 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.176 0.824 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.415 0.585 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.071 0.929 39 H -0.009 1.009 40 H -0.009 1.009 41 H 0.262 0.738 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.982 -5.008 -27.734 29.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.008 3.992 3 H 0.133 0.867 4 O -0.210 6.210 5 C 0.060 3.940 6 C -0.028 4.028 7 C -0.099 4.099 8 C -0.123 4.123 9 C -0.088 4.088 10 C -0.153 4.153 11 C 0.336 3.664 12 O -0.447 6.447 13 N -0.361 5.361 14 C 0.007 3.993 15 C -0.139 4.139 16 C -0.016 4.016 17 C -0.575 4.575 18 H 0.087 0.913 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.792 3.208 22 H -0.180 1.180 23 H -0.207 1.207 24 H -0.207 1.207 25 N -0.296 5.296 26 C 0.282 3.718 27 O -0.410 6.410 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.193 0.807 32 H 0.199 0.801 33 H 0.180 0.820 34 H 0.253 0.747 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.010 0.990 40 H 0.009 0.991 41 H 0.071 0.929 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 7.398 -4.682 -27.892 29.234 hybrid contribution 0.298 -0.073 0.654 0.723 sum 7.696 -4.754 -27.238 28.701 Atomic orbital electron populations 1.21691 0.88330 1.04038 1.04698 1.22873 0.99049 0.96842 0.80406 0.86655 1.86478 1.21419 1.73376 1.39733 1.18896 0.83588 0.98789 0.92739 1.18059 0.93889 1.06739 0.84108 1.21308 0.89283 0.97702 1.01625 1.21392 1.02249 0.98807 0.89878 1.21617 0.90570 0.95275 1.01351 1.19415 0.95185 1.10012 0.90678 1.18478 0.86167 0.77471 0.84324 1.90808 1.17376 1.49332 1.87215 1.45823 1.14878 1.69327 1.06102 1.21238 0.95931 0.99477 0.82613 1.21597 0.97494 1.02100 0.92661 1.18958 0.95306 0.94873 0.92438 1.21718 0.97363 1.45496 0.92935 0.91293 1.26046 0.97178 0.94897 1.02192 1.70129 1.18553 1.47699 1.21343 0.85359 0.79314 0.77634 0.78487 1.17962 1.20711 1.20741 1.43562 1.19373 1.53809 1.12827 1.21633 0.80833 0.78859 0.90481 1.90769 1.56013 1.60137 1.34109 0.91940 0.89899 0.87903 0.80688 0.80112 0.81974 0.74680 0.93380 0.93212 0.91099 0.91006 0.99026 0.99088 0.92887 0.72923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.14 71.98 0.66 -1.96 16 2 C 0.07 1.48 3.68 29.87 0.11 1.59 16 3 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 4 O -0.30 -8.30 8.20 -69.27 -0.57 -8.87 16 5 C 0.11 2.53 6.45 22.93 0.15 2.68 16 6 C 0.07 1.06 6.54 38.12 0.25 1.31 16 7 C -0.08 -0.62 9.94 22.39 0.22 -0.40 16 8 C -0.11 -0.71 10.02 22.24 0.22 -0.49 16 9 C -0.07 -0.86 9.54 22.56 0.22 -0.65 16 10 C -0.15 -3.34 5.88 -20.05 -0.12 -3.46 16 11 C 0.55 16.76 7.77 86.70 0.67 17.43 16 12 O -0.57 -22.75 15.20 16.74 0.25 -22.49 16 13 N -0.71 -19.25 5.51 -466.26 -2.57 -21.81 16 14 C 0.13 4.60 5.67 86.38 0.49 5.09 16 15 C -0.10 -3.75 5.27 30.59 0.16 -3.58 16 16 C 0.02 1.13 4.97 29.85 0.15 1.28 16 17 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 18 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 19 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 20 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 21 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 N -0.65 -9.95 5.48 -302.72 -1.66 -11.61 16 26 C 0.49 10.44 7.65 87.63 0.67 11.11 16 27 O -0.53 -13.65 17.01 -3.08 -0.05 -13.71 16 28 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.10 1.75 7.86 -2.39 -0.02 1.73 16 31 H 0.18 0.08 8.06 -2.91 -0.02 0.05 16 32 H 0.18 -0.14 8.06 -2.91 -0.02 -0.16 16 33 H 0.16 1.21 6.41 -2.91 -0.02 1.19 16 34 H 0.41 7.88 6.51 -92.70 -0.60 7.28 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.43 4.17 8.89 -92.71 -0.82 3.35 16 Total: -1.00 -80.59 357.73 1.91 -78.69 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -0.36 Total: 10.48 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 4.55 Total: 0.83 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -3.94 Total: -90.25 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -0.37 Total: -45.07 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -80.59 1.91 -78.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171512391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.008 kcal (2) G-P(sol) polarization free energy of solvation -80.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds