Wall clock time and date at job start Tue Mar 31 2020 12:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.44597 * 2 1 4 4 O 1.42999 * 109.44134 * 240.09835 * 2 1 3 5 5 C 1.35686 * 116.73421 * 286.33027 * 4 2 1 6 6 C 1.39275 * 119.52204 * 326.92199 * 5 4 2 7 7 C 1.38400 * 119.97308 * 180.23065 * 6 5 4 8 8 C 1.38575 * 120.16256 * 0.31248 * 7 6 5 9 9 C 1.37773 * 120.41370 * 359.97438 * 8 7 6 10 10 C 1.39484 * 120.06347 * 359.41708 * 9 8 7 11 11 C 1.47544 * 120.13810 * 180.02562 * 10 9 8 12 12 O 1.21586 * 120.00166 * 180.86573 * 11 10 9 13 13 N 1.34778 * 120.00033 * 0.87258 * 11 10 9 14 14 C 1.46504 * 120.00047 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47285 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47512 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47461 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00157 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00100 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00012 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46671 * 90.00196 * 21 19 17 23 23 H 1.48499 * 109.47220 * 209.99902 * 21 19 17 24 24 H 1.48494 * 109.46941 * 330.00397 * 21 19 17 25 25 N 1.40250 * 119.31684 * 0.46546 * 6 5 4 26 26 C 1.35092 * 118.95825 * 14.90622 * 25 6 5 27 27 O 1.21288 * 120.14125 * 181.94036 * 26 25 6 28 28 H 1.09007 * 109.47141 * 300.06597 * 1 2 3 29 29 H 1.09004 * 109.47447 * 60.06241 * 1 2 3 30 30 H 1.08997 * 109.47667 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.91625 * 180.29276 * 7 6 5 32 32 H 1.08000 * 119.79391 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.95196 * 180.02562 * 9 8 7 34 34 H 0.97002 * 120.00025 * 359.97438 * 13 11 10 35 35 H 1.08996 * 109.47351 * 300.00483 * 14 13 11 36 36 H 1.09001 * 109.46610 * 60.00248 * 14 13 11 37 37 H 1.09007 * 109.46976 * 300.00540 * 15 14 13 38 38 H 1.09006 * 109.47250 * 59.99904 * 15 14 13 39 39 H 1.08996 * 109.47098 * 300.00576 * 16 15 14 40 40 H 1.09003 * 109.47155 * 60.00147 * 16 15 14 41 41 H 0.96999 * 119.99971 * 179.97438 * 20 19 17 42 42 H 0.97001 * 120.52479 * 195.19144 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6722 -1.1690 5 6 1.8878 -2.0238 -1.1865 6 6 2.0037 -2.7384 0.0034 7 6 1.8895 -4.1176 -0.0044 8 6 1.6665 -4.7911 -1.1948 9 6 1.5560 -4.0961 -2.3793 10 6 1.6562 -2.7048 -2.3851 11 6 1.5375 -1.9588 -3.6525 12 8 1.6410 -0.7474 -3.6568 13 7 1.3143 -2.6202 -4.8054 14 6 1.1959 -1.8795 -6.0638 15 6 0.9467 -2.8601 -7.2114 16 6 0.8237 -2.0866 -8.5256 17 6 0.5776 -3.0525 -9.6559 18 1 0.5157 -4.1122 -9.4568 19 6 0.4327 -2.5834 -10.9443 20 7 0.2185 -3.4264 -11.9308 21 14 0.5406 -0.7506 -11.2888 22 1 1.9502 -0.3837 -11.5786 23 1 -0.3088 -0.4162 -12.4600 24 1 0.0665 0.0049 -10.1016 25 7 2.2309 -2.0453 1.2013 26 6 2.0319 -0.7094 1.2319 27 8 2.2555 -0.0835 2.2464 28 1 -0.3634 0.5149 0.8894 29 1 -0.3634 0.5129 -0.8906 30 1 -0.3634 -1.0276 0.0005 31 1 1.9747 -4.6704 0.9194 32 1 1.5779 -5.8674 -1.1940 33 1 1.3817 -4.6285 -3.3026 34 1 1.2320 -3.5868 -4.8020 35 1 0.3632 -1.1793 -5.9963 36 1 2.1186 -1.3298 -6.2499 37 1 1.7798 -3.5599 -7.2786 38 1 0.0242 -3.4102 -7.0254 39 1 -0.0090 -1.3865 -8.4586 40 1 1.7464 -1.5368 -8.7114 41 1 0.1162 -3.0964 -12.8372 42 1 2.5303 -2.5170 1.9942 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171512394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:21 Heat of formation + Delta-G solvation = -85.294203 kcal Electronic energy + Delta-G solvation = -25881.470048 eV Core-core repulsion = 22019.592688 eV Total energy + Delta-G solvation = -3861.877360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.07796 -39.95344 -38.72875 -37.99274 -35.60298 -35.46636 -33.35620 -32.36016 -31.75438 -30.74299 -29.51037 -27.28888 -25.30517 -24.54605 -23.88534 -22.67516 -20.91046 -20.31378 -19.91961 -19.30436 -18.34692 -17.09257 -16.90430 -16.66163 -16.40234 -15.86976 -15.58395 -15.49999 -15.34190 -14.87471 -14.70022 -14.21915 -14.11013 -13.67312 -13.41690 -13.32287 -12.90777 -12.71511 -12.56865 -12.50161 -12.13975 -12.01946 -11.91538 -11.58174 -11.26364 -11.08671 -10.89941 -10.46166 -10.20142 -9.98025 -9.79163 -9.59614 -9.23957 -9.21219 -8.83271 -8.56412 -8.43679 -6.07332 -4.06109 0.35526 0.62356 1.79380 2.24356 2.70101 2.86038 3.15467 3.30997 3.38696 3.42828 3.49043 3.54036 4.12426 4.34561 4.38246 4.43727 4.51361 4.61439 4.71185 4.78455 5.08764 5.16066 5.20756 5.26903 5.41185 5.55027 5.57541 5.61742 5.64619 5.85526 5.95131 6.00486 6.11217 6.29299 6.32348 6.43136 6.67484 6.77470 6.86472 7.21635 7.28473 7.35102 7.59265 7.75438 8.29464 8.49092 8.96373 9.55017 11.05845 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024979 B = 0.002446 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.689956 B =11444.201718 C =12346.063686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.154 0.846 4 O -0.264 6.264 5 C 0.137 3.863 6 C 0.079 3.921 7 C -0.101 4.101 8 C -0.118 4.118 9 C -0.077 4.077 10 C -0.123 4.123 11 C 0.552 3.448 12 O -0.518 6.518 13 N -0.721 5.721 14 C 0.116 3.884 15 C -0.114 4.114 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 N -0.658 5.658 26 C 0.497 3.503 27 O -0.510 6.510 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.398 0.602 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -1.767 28.345 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 H 0.171 0.829 4 O -0.177 6.177 5 C 0.088 3.912 6 C -0.016 4.016 7 C -0.122 4.122 8 C -0.136 4.136 9 C -0.096 4.096 10 C -0.127 4.127 11 C 0.337 3.663 12 O -0.394 6.394 13 N -0.374 5.374 14 C -0.007 4.007 15 C -0.152 4.152 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 N -0.305 5.305 26 C 0.284 3.716 27 O -0.384 6.384 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.233 0.767 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.118 -0.230 28.433 28.513 hybrid contribution 0.134 -0.025 0.225 0.263 sum 2.252 -0.255 28.658 28.747 Atomic orbital electron populations 1.22339 0.92078 1.03928 1.04957 1.22989 0.96954 0.97918 0.80605 0.82921 1.86566 1.77252 1.15033 1.38847 1.18486 0.97932 0.83371 0.91401 1.17899 1.06049 0.92567 0.85111 1.20794 1.00688 0.90941 0.99761 1.20911 1.00910 1.00656 0.91153 1.21212 0.97311 0.91794 0.99331 1.19480 1.06946 0.93673 0.92615 1.17889 0.77859 0.87341 0.83167 1.90833 1.48980 1.13163 1.86430 1.46070 1.72996 1.10892 1.07393 1.21675 1.01874 0.95441 0.81712 1.21712 1.01453 0.97787 0.94201 1.19501 0.96655 0.96387 0.92384 1.21091 1.49410 0.94810 0.90686 0.91004 1.25030 0.94479 0.97754 0.96226 1.69911 1.49665 1.34493 1.00128 0.86778 0.78354 0.86101 0.78087 1.20241 1.21395 1.18862 1.43695 1.66392 1.08189 1.12267 1.21601 0.77072 0.82007 0.90967 1.90805 1.49117 1.64999 1.33472 0.89942 0.89031 0.91699 0.84529 0.84211 0.84158 0.76727 0.91603 0.91599 0.92070 0.92051 0.96284 0.96710 0.92696 0.74427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.30 37.16 0.35 -1.09 16 2 C 0.07 0.73 3.81 -27.85 -0.11 0.63 16 3 H 0.15 1.29 8.14 -51.93 -0.42 0.86 16 4 O -0.26 -3.34 8.29 -40.45 -0.34 -3.67 16 5 C 0.14 1.53 5.85 -38.62 -0.23 1.31 16 6 C 0.08 0.67 6.54 -83.56 -0.55 0.12 16 7 C -0.10 -0.60 9.94 -39.40 -0.39 -0.99 16 8 C -0.12 -0.67 10.02 -39.63 -0.40 -1.07 16 9 C -0.08 -0.59 9.52 -39.29 -0.37 -0.96 16 10 C -0.12 -1.36 5.87 -105.06 -0.62 -1.98 16 11 C 0.55 7.87 7.76 -12.47 -0.10 7.77 16 12 O -0.52 -9.31 15.20 -16.40 -0.25 -9.56 16 13 N -0.72 -9.42 5.51 -61.35 -0.34 -9.76 16 14 C 0.12 1.84 5.67 -4.04 -0.02 1.81 16 15 C -0.11 -2.03 5.27 -26.74 -0.14 -2.17 16 16 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 17 C -0.52 -14.44 9.66 -34.44 -0.33 -14.77 16 18 H 0.07 2.11 7.99 -52.48 -0.42 1.70 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 21 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 25 N -0.66 -5.29 5.48 -9.71 -0.05 -5.34 16 26 C 0.50 5.05 7.19 -10.82 -0.08 4.98 16 27 O -0.51 -6.48 17.95 5.55 0.10 -6.38 16 28 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.54 7.81 -51.93 -0.41 0.13 16 31 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 32 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 33 H 0.14 0.78 6.39 -52.49 -0.34 0.45 16 34 H 0.40 3.98 6.50 -40.82 -0.27 3.72 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.42 2.37 8.89 -40.82 -0.36 2.01 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -35.59 354.28 -8.15 -43.75 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.53 Total: 0.45 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -3.19 Total: -4.98 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.38 Total: -41.79 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.49 Total: -19.61 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.59 -8.15 -43.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171512394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.548 kcal (2) G-P(sol) polarization free energy of solvation -35.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds