Wall clock time and date at job start Tue Mar 31 2020 12:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.44597 * 2 1 4 4 O 1.42999 * 109.44134 * 240.09835 * 2 1 3 5 5 C 1.35686 * 116.73421 * 286.33027 * 4 2 1 6 6 C 1.39275 * 119.52204 * 326.92199 * 5 4 2 7 7 C 1.38400 * 119.97308 * 180.23065 * 6 5 4 8 8 C 1.38575 * 120.16256 * 0.31248 * 7 6 5 9 9 C 1.37773 * 120.41370 * 359.97438 * 8 7 6 10 10 C 1.39484 * 120.06347 * 359.41708 * 9 8 7 11 11 C 1.47544 * 120.13810 * 180.02562 * 10 9 8 12 12 O 1.21586 * 120.00166 * 180.86573 * 11 10 9 13 13 N 1.34778 * 120.00033 * 0.87258 * 11 10 9 14 14 C 1.46504 * 120.00047 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47285 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47512 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47461 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00157 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00100 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00012 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46671 * 90.00196 * 21 19 17 23 23 H 1.48499 * 109.47220 * 209.99902 * 21 19 17 24 24 H 1.48494 * 109.46941 * 330.00397 * 21 19 17 25 25 N 1.40250 * 119.31684 * 0.46546 * 6 5 4 26 26 C 1.35092 * 118.95825 * 14.90622 * 25 6 5 27 27 O 1.21288 * 120.14125 * 181.94036 * 26 25 6 28 28 H 1.09007 * 109.47141 * 300.06597 * 1 2 3 29 29 H 1.09004 * 109.47447 * 60.06241 * 1 2 3 30 30 H 1.08997 * 109.47667 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.91625 * 180.29276 * 7 6 5 32 32 H 1.08000 * 119.79391 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.95196 * 180.02562 * 9 8 7 34 34 H 0.97002 * 120.00025 * 359.97438 * 13 11 10 35 35 H 1.08996 * 109.47351 * 300.00483 * 14 13 11 36 36 H 1.09001 * 109.46610 * 60.00248 * 14 13 11 37 37 H 1.09007 * 109.46976 * 300.00540 * 15 14 13 38 38 H 1.09006 * 109.47250 * 59.99904 * 15 14 13 39 39 H 1.08996 * 109.47098 * 300.00576 * 16 15 14 40 40 H 1.09003 * 109.47155 * 60.00147 * 16 15 14 41 41 H 0.96999 * 119.99971 * 179.97438 * 20 19 17 42 42 H 0.97001 * 120.52479 * 195.19144 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6722 -1.1690 5 6 1.8878 -2.0238 -1.1865 6 6 2.0037 -2.7384 0.0034 7 6 1.8895 -4.1176 -0.0044 8 6 1.6665 -4.7911 -1.1948 9 6 1.5560 -4.0961 -2.3793 10 6 1.6562 -2.7048 -2.3851 11 6 1.5375 -1.9588 -3.6525 12 8 1.6410 -0.7474 -3.6568 13 7 1.3143 -2.6202 -4.8054 14 6 1.1959 -1.8795 -6.0638 15 6 0.9467 -2.8601 -7.2114 16 6 0.8237 -2.0866 -8.5256 17 6 0.5776 -3.0525 -9.6559 18 1 0.5157 -4.1122 -9.4568 19 6 0.4327 -2.5834 -10.9443 20 7 0.2185 -3.4264 -11.9308 21 14 0.5406 -0.7506 -11.2888 22 1 1.9502 -0.3837 -11.5786 23 1 -0.3088 -0.4162 -12.4600 24 1 0.0665 0.0049 -10.1016 25 7 2.2309 -2.0453 1.2013 26 6 2.0319 -0.7094 1.2319 27 8 2.2555 -0.0835 2.2464 28 1 -0.3634 0.5149 0.8894 29 1 -0.3634 0.5129 -0.8906 30 1 -0.3634 -1.0276 0.0005 31 1 1.9747 -4.6704 0.9194 32 1 1.5779 -5.8674 -1.1940 33 1 1.3817 -4.6285 -3.3026 34 1 1.2320 -3.5868 -4.8020 35 1 0.3632 -1.1793 -5.9963 36 1 2.1186 -1.3298 -6.2499 37 1 1.7798 -3.5599 -7.2786 38 1 0.0242 -3.4102 -7.0254 39 1 -0.0090 -1.3865 -8.4586 40 1 1.7464 -1.5368 -8.7114 41 1 0.1162 -3.0964 -12.8372 42 1 2.5303 -2.5170 1.9942 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171512394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:20 Heat of formation + Delta-G solvation = -110.679939 kcal Electronic energy + Delta-G solvation = -25882.570856 eV Core-core repulsion = 22019.592688 eV Total energy + Delta-G solvation = -3862.978168 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.79736 -40.90319 -39.64269 -38.69526 -36.95247 -36.25557 -35.12388 -33.37379 -33.04984 -31.68373 -30.16530 -28.89886 -26.03875 -25.61611 -24.54654 -24.07834 -22.23157 -21.58067 -20.59802 -20.12479 -19.24151 -18.84401 -17.86504 -17.49233 -17.29393 -16.78623 -16.64025 -16.45965 -16.22097 -16.11701 -15.61444 -15.39265 -15.32684 -14.80877 -14.73686 -14.22977 -13.99112 -13.80538 -13.60110 -13.55522 -13.23851 -13.11484 -12.78399 -12.70458 -12.61241 -12.26167 -11.95532 -11.89626 -11.76000 -11.56290 -11.30329 -11.25055 -10.84187 -10.74035 -10.13698 -9.75113 -9.09109 -8.27390 -6.30690 -0.30927 -0.02681 1.07496 1.38315 1.40109 1.51604 1.57731 1.87013 2.15072 2.15523 2.38008 2.72604 2.80873 3.08632 3.46286 3.65840 3.75993 3.83957 3.93993 4.12875 4.21216 4.24019 4.24412 4.46104 4.52377 4.54064 4.57900 4.85780 4.92282 4.94309 4.96750 5.03284 5.07725 5.31062 5.37139 5.40760 5.53161 5.58402 5.59239 5.63766 5.67666 6.15562 6.29889 6.58600 6.61729 6.77601 7.25738 7.34153 8.88840 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024979 B = 0.002446 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.689956 B =11444.201718 C =12346.063686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.068 3.932 3 H 0.157 0.843 4 O -0.294 6.294 5 C 0.112 3.888 6 C 0.068 3.932 7 C -0.080 4.080 8 C -0.106 4.106 9 C -0.071 4.071 10 C -0.148 4.148 11 C 0.549 3.451 12 O -0.565 6.565 13 N -0.711 5.711 14 C 0.128 3.872 15 C -0.100 4.100 16 C -0.013 4.013 17 C -0.528 4.528 18 H 0.040 0.960 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.945 3.055 22 H -0.269 1.269 23 H -0.286 1.286 24 H -0.248 1.248 25 N -0.646 5.646 26 C 0.499 3.501 27 O -0.542 6.542 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.174 0.826 32 H 0.179 0.821 33 H 0.161 0.839 34 H 0.414 0.586 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.265 0.735 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 -3.036 30.317 30.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.009 3.991 3 H 0.174 0.826 4 O -0.207 6.207 5 C 0.064 3.936 6 C -0.027 4.027 7 C -0.101 4.101 8 C -0.125 4.125 9 C -0.090 4.090 10 C -0.152 4.152 11 C 0.338 3.662 12 O -0.444 6.444 13 N -0.364 5.364 14 C 0.005 3.995 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.566 4.566 18 H 0.059 0.941 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.769 3.231 22 H -0.194 1.194 23 H -0.211 1.211 24 H -0.172 1.172 25 N -0.294 5.294 26 C 0.286 3.714 27 O -0.419 6.419 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.192 0.808 32 H 0.196 0.804 33 H 0.178 0.822 34 H 0.252 0.748 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 2.188 -1.568 30.421 30.540 hybrid contribution 0.118 0.187 -0.368 0.429 sum 2.306 -1.381 30.053 30.173 Atomic orbital electron populations 1.22270 0.91044 1.03923 1.05225 1.23116 0.97847 0.98017 0.80093 0.82578 1.86520 1.77900 1.16327 1.39959 1.18789 0.99181 0.83043 0.92602 1.18010 1.06986 0.93503 0.84180 1.21292 0.97553 0.89706 1.01530 1.21370 0.98763 1.02382 0.89951 1.21519 0.95953 0.90259 1.01256 1.19335 1.10032 0.94966 0.90912 1.18411 0.76596 0.87029 0.84212 1.90802 1.51167 1.15282 1.87181 1.45847 1.72693 1.11603 1.06278 1.21305 1.01099 0.94829 0.82312 1.21481 1.02122 0.97613 0.92531 1.19474 0.96643 0.95860 0.93163 1.21466 1.48385 0.94396 0.92329 0.94149 1.25959 0.94377 1.02722 0.96155 1.70054 1.51486 1.36845 1.00709 0.85732 0.78722 0.80249 0.78413 1.19390 1.21140 1.17150 1.43548 1.65568 1.07538 1.12723 1.21587 0.76704 0.82671 0.90429 1.90787 1.50855 1.65812 1.34417 0.88547 0.89753 0.91782 0.80837 0.80376 0.82179 0.74822 0.92403 0.92534 0.91461 0.91372 0.96150 0.96350 0.92568 0.72970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.30 71.98 0.67 -2.10 16 2 C 0.07 1.38 3.81 29.87 0.11 1.49 16 3 H 0.16 2.84 8.14 -2.39 -0.02 2.82 16 4 O -0.29 -7.65 8.29 -69.31 -0.57 -8.23 16 5 C 0.11 2.44 5.85 22.89 0.13 2.58 16 6 C 0.07 1.01 6.54 38.08 0.25 1.26 16 7 C -0.08 -0.60 9.94 22.39 0.22 -0.38 16 8 C -0.11 -0.70 10.02 22.24 0.22 -0.48 16 9 C -0.07 -0.85 9.52 22.46 0.21 -0.63 16 10 C -0.15 -3.12 5.87 -20.15 -0.12 -3.24 16 11 C 0.55 15.56 7.76 86.70 0.67 16.23 16 12 O -0.56 -20.90 15.20 16.75 0.25 -20.65 16 13 N -0.71 -17.77 5.51 -466.26 -2.57 -20.34 16 14 C 0.13 3.97 5.67 86.38 0.49 4.46 16 15 C -0.10 -3.44 5.27 30.59 0.16 -3.28 16 16 C -0.01 -0.60 4.04 29.84 0.12 -0.48 16 17 C -0.53 -29.41 9.66 25.60 0.25 -29.17 16 18 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 19 C 0.00 0.27 5.47 84.65 0.46 0.73 16 20 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 21 Si 0.94 44.11 27.47 68.60 1.88 45.99 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 25 N -0.65 -9.36 5.48 -302.84 -1.66 -11.02 16 26 C 0.50 10.02 7.19 87.63 0.63 10.65 16 27 O -0.54 -13.79 17.95 -3.06 -0.05 -13.84 16 28 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.06 1.05 7.81 -2.39 -0.02 1.03 16 31 H 0.17 0.05 8.06 -2.91 -0.02 0.02 16 32 H 0.18 -0.08 8.06 -2.91 -0.02 -0.11 16 33 H 0.16 1.18 6.39 -2.91 -0.02 1.16 16 34 H 0.41 7.41 6.50 -92.71 -0.60 6.81 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 40 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 41 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.43 3.92 8.89 -92.71 -0.82 3.09 16 Total: -1.00 -80.18 354.28 1.67 -78.51 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -0.41 Total: 10.40 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 4.49 Total: -2.34 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -3.93 Total: -89.85 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.38 Total: -42.72 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Total: -80.18 1.67 -78.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171512394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.165 kcal (2) G-P(sol) polarization free energy of solvation -80.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds