Wall clock time and date at job start Tue Mar 31 2020 12:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46884 * 2 1 4 4 C 1.50700 * 109.46977 * 240.00187 * 2 1 3 5 5 H 1.07999 * 119.99826 * 239.99718 * 4 2 1 6 6 C 1.37882 * 120.00002 * 59.99529 * 4 2 1 7 7 N 1.31515 * 119.99757 * 179.72255 * 6 4 2 8 8 Si 1.86792 * 119.99986 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47180 * 269.72078 * 8 6 4 10 10 H 1.48500 * 109.47378 * 29.72143 * 8 6 4 11 11 H 1.48504 * 109.47081 * 149.71972 * 8 6 4 12 12 N 1.46497 * 109.47340 * 120.00319 * 2 1 3 13 13 C 1.46501 * 119.99982 * 59.99458 * 12 2 1 14 14 C 1.34776 * 119.99892 * 240.00239 * 12 2 1 15 15 O 1.21366 * 119.99688 * 356.73040 * 14 12 2 16 16 C 1.49333 * 120.00107 * 176.73243 * 14 12 2 17 17 O 1.21383 * 119.99739 * 6.10952 * 16 14 12 18 18 N 1.34771 * 120.00245 * 186.11130 * 16 14 12 19 19 C 1.39863 * 120.00405 * 174.43791 * 18 16 14 20 20 C 1.38944 * 120.19902 * 153.64684 * 19 18 16 21 21 C 1.37832 * 120.27051 * 179.87344 * 20 19 18 22 22 C 1.39326 * 120.34598 * 0.04741 * 21 20 19 23 23 C 1.38916 * 118.99099 * 0.18075 * 22 21 20 24 24 C 1.37662 * 120.86548 * 359.38757 * 23 22 21 25 25 C 1.51668 * 107.03585 * 179.45276 * 23 22 21 26 26 C 1.54703 * 101.92723 * 344.48513 * 25 23 22 27 27 O 1.36212 * 129.79395 * 180.61309 * 22 21 20 28 28 H 1.08992 * 109.47358 * 299.99551 * 1 2 3 29 29 H 1.08997 * 109.47190 * 60.00405 * 1 2 3 30 30 H 1.09006 * 109.47170 * 180.02562 * 1 2 3 31 31 H 0.96995 * 119.99910 * 180.27855 * 7 6 4 32 32 H 1.09007 * 109.46735 * 95.87604 * 13 12 2 33 33 H 1.09001 * 109.47104 * 215.86850 * 13 12 2 34 34 H 1.08994 * 109.47512 * 335.87699 * 13 12 2 35 35 H 0.97008 * 119.99681 * 354.43860 * 18 16 14 36 36 H 1.07997 * 119.86078 * 359.84637 * 20 19 18 37 37 H 1.08003 * 119.82554 * 180.02562 * 21 20 19 38 38 H 1.07997 * 120.04213 * 180.58733 * 24 23 22 39 39 H 1.09002 * 110.93478 * 226.32577 * 25 23 22 40 40 H 1.08996 * 110.96869 * 102.65910 * 25 23 22 41 41 H 1.08996 * 110.74394 * 267.01847 * 26 25 23 42 42 H 1.08996 * 110.74415 * 143.67653 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 2.1420 -0.8561 -3.5566 8 14 0.6257 1.2798 -2.6541 9 1 -0.8017 0.8739 -2.7060 10 1 0.8440 2.1742 -1.4889 11 1 0.9816 1.9990 -3.9037 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1354 1.1076 1.8622 16 6 3.2308 -0.7166 3.3382 17 8 2.9831 -1.8926 3.5086 18 7 3.9006 -0.0255 4.2816 19 6 4.2085 -0.6297 5.5048 20 6 5.3054 -0.1988 6.2408 21 6 5.6086 -0.7914 7.4477 22 6 4.8193 -1.8284 7.9406 23 6 3.7274 -2.2560 7.1959 24 6 3.4156 -1.6612 5.9942 25 6 3.0786 -3.3884 7.9685 26 6 4.1856 -3.7580 8.9841 27 8 4.9328 -2.5352 9.0995 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.9110 -0.5224 -4.4375 32 1 2.4665 -2.7353 1.0637 33 1 1.5218 -2.2603 2.4956 34 1 0.7419 -2.3277 0.8969 35 1 4.1693 0.8911 4.1122 36 1 5.9231 0.6036 5.8654 37 1 6.4627 -0.4505 8.0140 38 1 2.5581 -1.9979 5.4306 39 1 2.8553 -4.2297 7.3124 40 1 2.1790 -3.0464 8.4801 41 1 4.8140 -4.5593 8.5956 42 1 3.7513 -4.0372 9.9439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190143229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:19 Heat of formation + Delta-G solvation = -40.728666 kcal Electronic energy + Delta-G solvation = -26321.331362 eV Core-core repulsion = 22461.386509 eV Total energy + Delta-G solvation = -3859.944853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44433 -40.63988 -38.75819 -37.37976 -35.98920 -34.40466 -32.90954 -32.71090 -30.51759 -29.59038 -29.21977 -26.45424 -25.39234 -24.88355 -23.78236 -22.46628 -21.84167 -20.80183 -19.36112 -17.84958 -17.69975 -17.18031 -16.85579 -16.60699 -16.27314 -15.94817 -15.69471 -15.16012 -14.60856 -14.36228 -14.03589 -13.78907 -13.49309 -13.35731 -13.17472 -13.03031 -12.92353 -12.75500 -12.44002 -12.30796 -12.04959 -11.97658 -11.85643 -11.62731 -11.26978 -11.02524 -10.77767 -10.72339 -10.21987 -10.04676 -9.70583 -9.43570 -9.13459 -8.89737 -8.70918 -7.98092 -7.81611 -6.20916 -4.23090 0.92080 1.12121 1.78889 2.50811 3.04302 3.18146 3.31823 3.32700 3.38074 3.62707 3.81736 4.16542 4.28272 4.33054 4.62083 4.68038 4.71425 4.91162 4.99769 5.09798 5.11213 5.38151 5.42471 5.48401 5.61841 5.75293 5.84850 6.04024 6.06070 6.10900 6.17483 6.20963 6.22284 6.32923 6.43807 6.55482 6.72819 6.84172 6.96788 7.06514 7.14514 7.48961 7.73277 7.97622 8.29289 8.48156 8.80896 9.37910 10.91637 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.002728 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.033173 B =10263.174640 C =10642.759722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.226 3.774 3 H 0.066 0.934 4 C -0.531 4.531 5 H 0.081 0.919 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.293 1.293 12 N -0.545 5.545 13 C 0.073 3.927 14 C 0.496 3.504 15 O -0.535 6.535 16 C 0.510 3.490 17 O -0.497 6.497 18 N -0.645 5.645 19 C 0.126 3.874 20 C -0.112 4.112 21 C -0.115 4.115 22 C 0.083 3.917 23 C -0.153 4.153 24 C -0.079 4.079 25 C -0.110 4.110 26 C 0.052 3.948 27 O -0.307 6.307 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.267 0.733 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.424 0.576 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.147 0.853 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.962 -2.816 23.609 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.125 3.875 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.188 1.188 11 H -0.220 1.220 12 N -0.275 5.275 13 C -0.070 4.070 14 C 0.277 3.723 15 O -0.414 6.414 16 C 0.293 3.707 17 O -0.371 6.371 18 N -0.291 5.291 19 C 0.031 3.969 20 C -0.132 4.132 21 C -0.135 4.135 22 C 0.038 3.962 23 C -0.154 4.154 24 C -0.099 4.099 25 C -0.147 4.147 26 C -0.023 4.023 27 O -0.221 6.221 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.262 0.738 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.165 0.835 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.018 -3.022 23.501 23.781 hybrid contribution -0.530 0.954 -0.564 1.228 sum 1.489 -2.068 22.937 23.078 Atomic orbital electron populations 1.22479 0.98484 1.01525 0.99559 1.19507 0.90377 0.95244 0.82342 0.91628 1.21099 1.33107 1.14502 0.88213 0.90105 1.24857 0.95622 0.96596 0.95529 1.69866 1.44813 1.40126 0.98024 0.86920 0.80468 0.83712 0.77638 1.20266 1.18764 1.21981 1.47871 1.45816 1.12714 1.21137 1.22191 1.01406 0.80792 1.02594 1.19584 0.81706 0.86704 0.84330 1.90726 1.56022 1.17669 1.76995 1.20784 0.78365 0.86709 0.84806 1.90643 1.52430 1.15262 1.78770 1.43195 1.55433 1.17714 1.12802 1.17554 0.95729 0.97034 0.86538 1.20590 0.95852 1.01854 0.94911 1.19966 1.00142 0.97189 0.96156 1.19548 0.95088 0.95130 0.86462 1.20593 0.97360 1.00977 0.96508 1.20431 0.99909 0.95627 0.93923 1.21798 0.98823 0.97083 0.97021 1.23819 0.91880 0.85962 1.00608 1.86819 1.70987 1.32057 1.32264 0.94602 0.92763 0.92148 0.92279 0.92392 0.89339 0.91006 0.73821 0.84447 0.84952 0.83540 0.88748 0.89056 0.90516 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 8.66 37.16 0.32 -3.06 16 2 C 0.23 5.33 2.22 -69.08 -0.15 5.18 16 3 H 0.07 1.67 5.96 -51.93 -0.31 1.36 16 4 C -0.53 -14.51 8.95 -34.44 -0.31 -14.81 16 5 H 0.08 2.40 7.89 -52.49 -0.41 1.99 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 8 Si 0.88 21.21 24.37 -169.99 -4.14 17.07 16 9 H -0.28 -6.33 6.88 56.52 0.39 -5.94 16 10 H -0.26 -6.15 6.52 56.52 0.37 -5.79 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 N -0.55 -11.27 2.75 -175.81 -0.48 -11.76 16 13 C 0.07 1.30 8.74 59.85 0.52 1.82 16 14 C 0.50 9.67 7.73 -11.64 -0.09 9.58 16 15 O -0.54 -11.47 15.82 5.48 0.09 -11.38 16 16 C 0.51 8.24 7.56 -11.64 -0.09 8.15 16 17 O -0.50 -8.26 10.43 5.47 0.06 -8.20 16 18 N -0.65 -8.53 5.36 -10.25 -0.05 -8.58 16 19 C 0.13 1.56 6.41 -83.65 -0.54 1.03 16 20 C -0.11 -1.14 9.92 -39.47 -0.39 -1.54 16 21 C -0.12 -1.18 10.05 -39.33 -0.40 -1.57 16 22 C 0.08 0.94 7.04 -38.93 -0.27 0.67 16 23 C -0.15 -1.73 6.26 -104.10 -0.65 -2.39 16 24 C -0.08 -1.00 8.69 -39.51 -0.34 -1.34 16 25 C -0.11 -0.90 7.12 -26.51 -0.19 -1.08 16 26 C 0.05 0.38 8.01 38.05 0.30 0.69 16 27 O -0.31 -3.29 11.11 -20.42 -0.23 -3.52 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 1.17 3.28 -51.93 -0.17 1.00 16 30 H 0.06 1.17 6.67 -51.93 -0.35 0.83 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 33 H 0.09 1.42 5.37 -51.93 -0.28 1.14 16 34 H 0.07 1.24 6.44 -51.93 -0.33 0.91 16 35 H 0.42 4.92 8.27 -40.82 -0.34 4.58 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.15 1.98 5.94 -52.49 -0.31 1.67 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -32.31 340.20 -6.30 -38.61 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.07 Total: 4.98 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -2.37 Total: 3.38 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.23 Total: -46.07 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.08 Total: -23.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.14 Total: 17.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.31 -6.30 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190143229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.123 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds