Wall clock time and date at job start Tue Mar 31 2020 12:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46884 * 2 1 4 4 C 1.50700 * 109.46977 * 240.00187 * 2 1 3 5 5 H 1.07999 * 119.99826 * 239.99718 * 4 2 1 6 6 C 1.37882 * 120.00002 * 59.99529 * 4 2 1 7 7 N 1.31515 * 119.99757 * 179.72255 * 6 4 2 8 8 Si 1.86792 * 119.99986 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47180 * 269.72078 * 8 6 4 10 10 H 1.48500 * 109.47378 * 29.72143 * 8 6 4 11 11 H 1.48504 * 109.47081 * 149.71972 * 8 6 4 12 12 N 1.46497 * 109.47340 * 120.00319 * 2 1 3 13 13 C 1.46501 * 119.99982 * 59.99458 * 12 2 1 14 14 C 1.34776 * 119.99892 * 240.00239 * 12 2 1 15 15 O 1.21366 * 119.99688 * 356.73040 * 14 12 2 16 16 C 1.49333 * 120.00107 * 176.73243 * 14 12 2 17 17 O 1.21383 * 119.99739 * 6.10952 * 16 14 12 18 18 N 1.34771 * 120.00245 * 186.11130 * 16 14 12 19 19 C 1.39863 * 120.00405 * 174.43791 * 18 16 14 20 20 C 1.38944 * 120.19902 * 153.64684 * 19 18 16 21 21 C 1.37832 * 120.27051 * 179.87344 * 20 19 18 22 22 C 1.39326 * 120.34598 * 0.04741 * 21 20 19 23 23 C 1.38916 * 118.99099 * 0.18075 * 22 21 20 24 24 C 1.37662 * 120.86548 * 359.38757 * 23 22 21 25 25 C 1.51668 * 107.03585 * 179.45276 * 23 22 21 26 26 C 1.54703 * 101.92723 * 344.48513 * 25 23 22 27 27 O 1.36212 * 129.79395 * 180.61309 * 22 21 20 28 28 H 1.08992 * 109.47358 * 299.99551 * 1 2 3 29 29 H 1.08997 * 109.47190 * 60.00405 * 1 2 3 30 30 H 1.09006 * 109.47170 * 180.02562 * 1 2 3 31 31 H 0.96995 * 119.99910 * 180.27855 * 7 6 4 32 32 H 1.09007 * 109.46735 * 95.87604 * 13 12 2 33 33 H 1.09001 * 109.47104 * 215.86850 * 13 12 2 34 34 H 1.08994 * 109.47512 * 335.87699 * 13 12 2 35 35 H 0.97008 * 119.99681 * 354.43860 * 18 16 14 36 36 H 1.07997 * 119.86078 * 359.84637 * 20 19 18 37 37 H 1.08003 * 119.82554 * 180.02562 * 21 20 19 38 38 H 1.07997 * 120.04213 * 180.58733 * 24 23 22 39 39 H 1.09002 * 110.93478 * 226.32577 * 25 23 22 40 40 H 1.08996 * 110.96869 * 102.65910 * 25 23 22 41 41 H 1.08996 * 110.74394 * 267.01847 * 26 25 23 42 42 H 1.08996 * 110.74415 * 143.67653 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 2.1420 -0.8561 -3.5566 8 14 0.6257 1.2798 -2.6541 9 1 -0.8017 0.8739 -2.7060 10 1 0.8440 2.1742 -1.4889 11 1 0.9816 1.9990 -3.9037 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1354 1.1076 1.8622 16 6 3.2308 -0.7166 3.3382 17 8 2.9831 -1.8926 3.5086 18 7 3.9006 -0.0255 4.2816 19 6 4.2085 -0.6297 5.5048 20 6 5.3054 -0.1988 6.2408 21 6 5.6086 -0.7914 7.4477 22 6 4.8193 -1.8284 7.9406 23 6 3.7274 -2.2560 7.1959 24 6 3.4156 -1.6612 5.9942 25 6 3.0786 -3.3884 7.9685 26 6 4.1856 -3.7580 8.9841 27 8 4.9328 -2.5352 9.0995 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.9110 -0.5224 -4.4375 32 1 2.4665 -2.7353 1.0637 33 1 1.5218 -2.2603 2.4956 34 1 0.7419 -2.3277 0.8969 35 1 4.1693 0.8911 4.1122 36 1 5.9231 0.6036 5.8654 37 1 6.4627 -0.4505 8.0140 38 1 2.5581 -1.9979 5.4306 39 1 2.8553 -4.2297 7.3124 40 1 2.1790 -3.0464 8.4801 41 1 4.8140 -4.5593 8.5956 42 1 3.7513 -4.0372 9.9439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190143229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:18 Heat of formation + Delta-G solvation = -63.354666 kcal Electronic energy + Delta-G solvation = -26322.312499 eV Core-core repulsion = 22461.386509 eV Total energy + Delta-G solvation = -3860.925990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.42683 -41.76182 -40.11788 -38.44829 -37.60497 -35.57123 -34.67911 -33.62716 -32.34489 -30.42602 -30.07363 -27.95292 -27.23503 -26.34817 -24.65478 -23.42903 -22.78347 -22.11251 -20.82897 -19.19043 -18.76563 -18.61380 -18.23006 -17.71830 -17.52064 -17.18859 -16.96861 -16.57343 -16.07883 -15.40323 -15.25213 -15.08253 -14.82584 -14.64905 -14.20649 -14.14762 -14.02125 -13.98404 -13.82614 -13.67266 -13.59167 -13.28949 -13.08598 -12.68845 -12.63479 -12.42862 -12.21964 -12.07301 -11.81369 -11.54626 -11.41232 -10.96082 -10.82379 -10.40695 -9.89365 -9.63623 -8.74207 -8.36732 -6.43806 -0.11871 0.27183 0.57009 1.21137 1.28254 1.37189 1.45793 2.01819 2.26955 2.32112 2.50373 2.68899 2.97743 3.17377 3.48707 3.69135 3.91388 4.13472 4.17292 4.23839 4.31033 4.39898 4.48205 4.49458 4.54453 4.62782 4.70863 4.76850 4.87130 4.89150 4.94367 4.98039 5.00912 5.17917 5.23215 5.27205 5.36409 5.38016 5.52684 5.59176 5.90993 6.13759 6.16966 6.39276 6.58100 6.63949 6.87527 7.22163 8.79483 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.002728 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.033173 B =10263.174640 C =10642.759722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.229 3.771 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.939 5.939 8 Si 0.944 3.056 9 H -0.252 1.252 10 H -0.253 1.253 11 H -0.295 1.295 12 N -0.557 5.557 13 C 0.079 3.921 14 C 0.492 3.508 15 O -0.558 6.558 16 C 0.517 3.483 17 O -0.505 6.505 18 N -0.628 5.628 19 C 0.102 3.898 20 C -0.102 4.102 21 C -0.118 4.118 22 C 0.076 3.924 23 C -0.166 4.166 24 C -0.093 4.093 25 C -0.110 4.110 26 C 0.049 3.951 27 O -0.320 6.320 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.270 0.730 32 H 0.043 0.957 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.431 0.569 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -2.271 26.142 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.126 3.874 3 H 0.064 0.936 4 C -0.572 4.572 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.578 5.578 8 Si 0.770 3.230 9 H -0.178 1.178 10 H -0.177 1.177 11 H -0.223 1.223 12 N -0.287 5.287 13 C -0.063 4.063 14 C 0.274 3.726 15 O -0.438 6.438 16 C 0.300 3.700 17 O -0.380 6.380 18 N -0.275 5.275 19 C 0.009 3.991 20 C -0.122 4.122 21 C -0.137 4.137 22 C 0.030 3.970 23 C -0.167 4.167 24 C -0.113 4.113 25 C -0.147 4.147 26 C -0.025 4.025 27 O -0.235 6.235 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.271 0.729 36 H 0.181 0.819 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.407 -2.489 26.093 26.249 hybrid contribution -0.197 0.699 -1.217 1.417 sum 1.210 -1.789 24.876 24.970 Atomic orbital electron populations 1.22351 0.95828 1.02664 1.00588 1.19234 0.92363 0.93806 0.81969 0.93566 1.21289 1.32296 1.13353 0.90247 0.94107 1.25698 0.97087 0.99745 0.95043 1.70007 1.46805 1.42246 0.98723 0.85931 0.79701 0.79779 0.77567 1.17769 1.17743 1.22278 1.47893 1.46429 1.13655 1.20735 1.22253 1.00959 0.79145 1.03954 1.20148 0.80738 0.86514 0.85170 1.90699 1.56561 1.18754 1.77803 1.20035 0.79279 0.86498 0.84192 1.90636 1.53362 1.15338 1.78685 1.43003 1.54156 1.17803 1.12498 1.17743 0.97111 0.97930 0.86365 1.20855 0.95032 1.01879 0.94424 1.20304 1.00600 0.96662 0.96151 1.19848 0.95159 0.95363 0.86636 1.20903 0.97862 1.01752 0.96195 1.20425 0.99954 0.96291 0.94671 1.21908 0.99400 0.96342 0.97055 1.24101 0.91501 0.84943 1.01953 1.86803 1.71528 1.33146 1.31981 0.91846 0.93284 0.91073 0.92090 0.93847 0.87186 0.90508 0.72948 0.81887 0.82664 0.84815 0.87961 0.87923 0.89636 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.21 8.66 71.98 0.62 -5.59 16 2 C 0.23 10.74 2.22 44.25 0.10 10.84 16 3 H 0.05 2.36 5.96 -2.39 -0.01 2.34 16 4 C -0.53 -29.89 8.95 25.60 0.23 -29.66 16 5 H 0.04 2.55 7.89 -2.91 -0.02 2.52 16 6 C 0.02 1.33 5.45 84.66 0.46 1.79 16 7 N -0.94 -57.33 13.96 21.45 0.30 -57.03 16 8 Si 0.94 43.50 24.37 68.60 1.67 45.17 16 9 H -0.25 -10.64 6.88 99.48 0.68 -9.95 16 10 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16 11 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 12 N -0.56 -23.07 2.75 -828.51 -2.28 -25.35 16 13 C 0.08 2.80 8.74 127.77 1.12 3.92 16 14 C 0.49 19.16 7.73 87.23 0.67 19.84 16 15 O -0.56 -23.93 15.82 -3.30 -0.05 -23.98 16 16 C 0.52 16.51 7.56 87.23 0.66 17.16 16 17 O -0.50 -16.60 10.43 -3.35 -0.03 -16.63 16 18 N -0.63 -16.03 5.36 -304.69 -1.63 -17.66 16 19 C 0.10 2.41 6.41 38.21 0.24 2.65 16 20 C -0.10 -1.87 9.92 22.34 0.22 -1.65 16 21 C -0.12 -2.14 10.05 22.44 0.23 -1.92 16 22 C 0.08 1.58 7.04 22.69 0.16 1.74 16 23 C -0.17 -3.53 6.26 -19.53 -0.12 -3.66 16 24 C -0.09 -2.30 8.69 22.32 0.19 -2.11 16 25 C -0.11 -1.58 7.12 30.74 0.22 -1.36 16 26 C 0.05 0.60 8.01 72.56 0.58 1.18 16 27 O -0.32 -6.16 11.11 -95.97 -1.07 -7.23 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.05 1.99 3.28 -2.39 -0.01 1.98 16 30 H 0.07 2.64 6.67 -2.38 -0.02 2.62 16 31 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.11 3.45 5.37 -2.43 -0.01 3.44 16 34 H 0.08 2.62 6.44 -2.39 -0.02 2.61 16 35 H 0.43 9.55 8.27 -92.70 -0.77 8.78 16 36 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.13 3.59 5.94 -2.91 -0.02 3.57 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -71.22 340.20 2.72 -68.50 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.23 Total: 21.05 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.59 Total: 13.17 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -3.61 Total: -100.05 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -1.15 Total: -47.84 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.67 Total: 45.17 kcal Total: -71.22 2.72 -68.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190143229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.144 kcal (2) G-P(sol) polarization free energy of solvation -71.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds