Wall clock time and date at job start Tue Mar 31 2020 12:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35908 * 117.00508 * 2 1 4 4 C 1.38860 * 119.97774 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.24430 * 179.72053 * 4 3 2 6 6 C 1.38006 * 120.21018 * 0.27841 * 5 4 3 7 7 C 1.39603 * 119.95997 * 359.97438 * 6 5 4 8 8 C 1.47651 * 120.12131 * 179.97438 * 7 6 5 9 9 N 1.29085 * 125.86417 * 180.02562 * 8 7 6 10 10 O 1.41387 * 112.87338 * 179.68143 * 9 8 7 11 11 C 1.44212 * 107.59632 * 17.50081 * 10 9 8 12 12 H 1.08999 * 110.97456 * 216.44897 * 11 10 9 13 13 C 1.50694 * 110.97429 * 92.70678 * 11 10 9 14 14 O 1.21282 * 119.99943 * 356.45645 * 13 11 10 15 15 N 1.34780 * 120.00218 * 176.45839 * 13 11 10 16 16 C 1.46501 * 120.00266 * 180.02562 * 15 13 11 17 17 H 1.09001 * 109.46757 * 324.99388 * 16 15 13 18 18 C 1.52996 * 109.47201 * 84.99430 * 16 15 13 19 19 C 1.50697 * 109.47072 * 204.99886 * 16 15 13 20 20 H 1.08005 * 120.00043 * 359.97438 * 19 16 15 21 21 C 1.37875 * 119.99971 * 179.97438 * 19 16 15 22 22 N 1.31513 * 120.00175 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99892 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47132 * 60.00258 * 23 21 19 25 25 H 1.48506 * 109.46946 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47571 * 299.99997 * 23 21 19 27 27 C 1.51690 * 125.86640 * 359.71823 * 8 7 6 28 28 C 1.38445 * 119.98478 * 180.27607 * 3 2 1 29 29 H 1.09007 * 109.46995 * 59.99823 * 1 2 3 30 30 H 1.08997 * 109.47214 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46854 * 300.00166 * 1 2 3 32 32 H 1.08002 * 119.88060 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.89271 * 180.25732 * 5 4 3 34 34 H 1.08004 * 120.01869 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99518 * 359.97438 * 15 13 11 36 36 H 1.09001 * 109.47299 * 60.00290 * 18 16 15 37 37 H 1.09004 * 109.47012 * 180.02562 * 18 16 15 38 38 H 1.08997 * 109.47659 * 299.99980 * 18 16 15 39 39 H 0.96997 * 120.00260 * 180.02562 * 22 21 19 40 40 H 1.08994 * 110.79322 * 282.87424 * 27 8 7 41 41 H 1.08998 * 110.79147 * 46.34411 * 27 8 7 42 42 H 1.08000 * 120.10539 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2894 2.3752 0.0005 5 6 1.9114 3.6098 0.0064 6 6 3.2889 3.6934 0.0059 7 6 4.0581 2.5284 0.0001 8 6 5.5321 2.6137 -0.0010 9 7 6.3475 1.6130 -0.0067 10 8 7.7046 2.0099 -0.0134 11 6 7.7572 3.3900 0.4015 12 1 8.5322 3.9313 -0.1412 13 6 7.9688 3.4983 1.8896 14 8 8.0051 2.4959 2.5714 15 7 8.1176 4.7090 2.4628 16 6 8.3239 4.8141 3.9094 17 1 7.7531 4.0355 4.4154 18 6 9.8110 4.6439 4.2263 19 6 7.8604 6.1666 4.3859 20 1 7.4532 6.8769 3.6815 21 6 7.9560 6.4971 5.7210 22 7 8.4513 5.6320 6.5788 23 14 7.3821 8.1738 6.3115 24 1 5.9389 8.3398 6.0033 25 1 7.5899 8.2799 7.7781 26 1 8.1605 9.2344 5.6227 27 6 6.3484 3.8922 -0.0023 28 6 3.4286 1.2829 -0.0058 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2110 2.3161 0.0014 33 1 1.3174 4.5118 0.0110 34 1 3.7716 4.6596 0.0109 35 1 8.0889 5.5106 1.9174 36 1 10.3818 5.4226 3.7203 37 1 9.9644 4.7217 5.3026 38 1 10.1463 3.6657 3.8817 39 1 8.5183 5.8644 7.5182 40 1 6.3645 4.3400 -0.9959 41 1 5.9642 4.5973 0.7348 42 1 4.0182 0.3780 -0.0107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194202830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:37 Heat of formation + Delta-G solvation = -26.099078 kcal Electronic energy + Delta-G solvation = -25956.257093 eV Core-core repulsion = 22096.946626 eV Total energy + Delta-G solvation = -3859.310467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72142 -40.13324 -38.29864 -37.54262 -34.83817 -33.55122 -32.57142 -31.30645 -30.72720 -30.01961 -28.65750 -27.57068 -25.31740 -24.64912 -23.51015 -22.51804 -21.16621 -20.14166 -19.57177 -18.15296 -17.65500 -16.64740 -16.38126 -16.15113 -16.02075 -15.89447 -15.41870 -15.12392 -14.81944 -14.17771 -14.06445 -13.87261 -13.73549 -13.34537 -13.16940 -12.78156 -12.48133 -12.43990 -12.31396 -11.96662 -11.92786 -11.63279 -11.46263 -11.21091 -11.14786 -10.99025 -10.77430 -10.75784 -10.40822 -10.28013 -10.25662 -9.13118 -9.09806 -8.69819 -8.58971 -8.43223 -8.00526 -6.15828 -4.26159 0.51214 1.18404 2.12946 2.83311 2.97934 3.22096 3.26764 3.28410 3.31928 3.57246 3.80434 3.96715 4.30545 4.35005 4.49280 4.50850 4.69678 4.79096 4.83236 4.94919 5.03204 5.12779 5.16042 5.17239 5.23212 5.25918 5.47210 5.51515 5.60505 5.78407 5.98230 6.11620 6.23115 6.38596 6.78768 6.92957 7.09538 7.10721 7.31107 7.38141 7.50143 7.63569 7.86309 8.10455 8.54952 8.71631 9.00645 9.41202 10.90114 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.003196 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.778263 B = 8759.580960 C = 9965.815853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.124 3.876 4 C -0.193 4.193 5 C -0.081 4.081 6 C -0.122 4.122 7 C 0.006 3.994 8 C 0.115 3.885 9 N -0.265 5.265 10 O -0.164 6.164 11 C 0.022 3.978 12 H 0.137 0.863 13 C 0.485 3.515 14 O -0.528 6.528 15 N -0.704 5.704 16 C 0.266 3.734 17 H 0.048 0.952 18 C -0.148 4.148 19 C -0.536 4.536 20 H 0.061 0.939 21 C 0.067 3.933 22 N -0.882 5.882 23 Si 0.902 3.098 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.276 1.276 27 C -0.136 4.136 28 C -0.113 4.113 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.389 0.611 36 H 0.027 0.973 37 H 0.091 0.909 38 H 0.015 0.985 39 H 0.266 0.734 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 -2.128 -16.648 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.079 3.921 4 C -0.213 4.213 5 C -0.099 4.099 6 C -0.143 4.143 7 C 0.005 3.995 8 C -0.075 4.075 9 N -0.004 5.004 10 O -0.183 6.183 11 C -0.040 4.040 12 H 0.154 0.846 13 C 0.267 3.733 14 O -0.405 6.405 15 N -0.353 5.353 16 C 0.164 3.836 17 H 0.066 0.934 18 C -0.207 4.207 19 C -0.574 4.574 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.519 5.519 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.176 4.176 28 C -0.134 4.134 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.221 0.779 36 H 0.046 0.954 37 H 0.109 0.891 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.239 -4.307 -15.971 21.826 hybrid contribution -0.428 2.414 0.260 2.466 sum -14.667 -1.892 -15.711 21.577 Atomic orbital electron populations 1.23081 0.78260 1.04098 1.01372 1.86105 1.21443 1.26603 1.88710 1.18814 0.91898 0.84444 0.96952 1.21394 1.00260 0.92333 1.07291 1.20850 0.94130 0.97241 0.97687 1.21167 0.93776 0.97567 1.01751 1.17468 0.87274 0.93319 1.01467 1.24116 0.93775 0.93007 0.96580 1.78393 0.89349 1.21973 1.10681 1.91299 1.16418 1.25377 1.85222 1.23800 0.98983 0.85534 0.95725 0.84595 1.20510 0.78826 0.85100 0.88837 1.90723 1.50046 1.36044 1.63650 1.46506 1.70859 1.06089 1.11893 1.18770 0.93561 0.97696 0.73543 0.93387 1.22085 0.97651 0.96651 1.04273 1.21143 1.43076 0.99541 0.93666 0.92075 1.24894 0.94816 0.97483 0.96485 1.69892 1.44013 1.34776 1.03248 0.86497 0.79190 0.83584 0.77753 1.20155 1.21098 1.20127 1.22996 0.91295 0.97961 1.05316 1.20553 0.91630 0.98176 1.03002 0.92610 0.88139 0.92489 0.85109 0.84907 0.84819 0.77909 0.95363 0.89062 0.96585 0.92430 0.86832 0.86950 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.42 10.49 -19.45 -0.20 -3.62 16 3 C 0.12 1.42 6.68 -39.27 -0.26 1.16 16 4 C -0.19 -1.77 9.03 -39.35 -0.36 -2.13 16 5 C -0.08 -0.71 10.03 -39.66 -0.40 -1.11 16 6 C -0.12 -1.25 9.61 -39.16 -0.38 -1.63 16 7 C 0.01 0.08 5.87 -105.05 -0.62 -0.54 16 8 C 0.12 1.68 7.15 -79.42 -0.57 1.11 16 9 N -0.26 -4.68 12.11 35.30 0.43 -4.25 16 10 O -0.16 -3.02 11.82 -30.20 -0.36 -3.37 16 11 C 0.02 0.34 4.22 -26.87 -0.11 0.23 16 12 H 0.14 1.57 8.14 -51.93 -0.42 1.15 16 13 C 0.48 9.93 7.12 -10.99 -0.08 9.85 16 14 O -0.53 -13.60 16.25 -13.28 -0.22 -13.82 16 15 N -0.70 -14.24 5.07 -54.94 -0.28 -14.52 16 16 C 0.27 6.72 2.56 -69.08 -0.18 6.55 16 17 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 18 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 19 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 20 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.77 11.32 55.43 0.63 -24.14 16 23 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 27 C -0.14 -1.64 5.83 -26.38 -0.15 -1.79 16 28 C -0.11 -1.49 9.62 -39.01 -0.38 -1.86 16 29 H 0.06 0.27 7.66 -51.92 -0.40 -0.13 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 32 H 0.13 0.85 6.28 -52.49 -0.33 0.52 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.09 7.36 -52.48 -0.39 0.71 16 35 H 0.39 6.44 8.54 -40.82 -0.35 6.09 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.11 1.29 7.72 -51.93 -0.40 0.89 16 42 H 0.14 1.97 7.84 -52.49 -0.41 1.56 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -34.93 360.26 -7.58 -42.51 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.46 Total: 5.45 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.53 Total: -4.88 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.78 Total: -42.91 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.78 Total: -20.81 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.93 -7.58 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194202830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.411 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds