Wall clock time and date at job start Tue Mar 31 2020 12:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35908 * 117.00508 * 2 1 4 4 C 1.38860 * 119.97774 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.24430 * 179.72053 * 4 3 2 6 6 C 1.38006 * 120.21018 * 0.27841 * 5 4 3 7 7 C 1.39603 * 119.95997 * 359.97438 * 6 5 4 8 8 C 1.47651 * 120.12131 * 179.97438 * 7 6 5 9 9 N 1.29085 * 125.86417 * 180.02562 * 8 7 6 10 10 O 1.41387 * 112.87338 * 179.68143 * 9 8 7 11 11 C 1.44212 * 107.59632 * 17.50081 * 10 9 8 12 12 H 1.08999 * 110.97456 * 216.44897 * 11 10 9 13 13 C 1.50694 * 110.97429 * 92.70678 * 11 10 9 14 14 O 1.21282 * 119.99943 * 356.45645 * 13 11 10 15 15 N 1.34780 * 120.00218 * 176.45839 * 13 11 10 16 16 C 1.46501 * 120.00266 * 180.02562 * 15 13 11 17 17 H 1.09001 * 109.46757 * 324.99388 * 16 15 13 18 18 C 1.52996 * 109.47201 * 84.99430 * 16 15 13 19 19 C 1.50697 * 109.47072 * 204.99886 * 16 15 13 20 20 H 1.08005 * 120.00043 * 359.97438 * 19 16 15 21 21 C 1.37875 * 119.99971 * 179.97438 * 19 16 15 22 22 N 1.31513 * 120.00175 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99892 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47132 * 60.00258 * 23 21 19 25 25 H 1.48506 * 109.46946 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47571 * 299.99997 * 23 21 19 27 27 C 1.51690 * 125.86640 * 359.71823 * 8 7 6 28 28 C 1.38445 * 119.98478 * 180.27607 * 3 2 1 29 29 H 1.09007 * 109.46995 * 59.99823 * 1 2 3 30 30 H 1.08997 * 109.47214 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46854 * 300.00166 * 1 2 3 32 32 H 1.08002 * 119.88060 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.89271 * 180.25732 * 5 4 3 34 34 H 1.08004 * 120.01869 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99518 * 359.97438 * 15 13 11 36 36 H 1.09001 * 109.47299 * 60.00290 * 18 16 15 37 37 H 1.09004 * 109.47012 * 180.02562 * 18 16 15 38 38 H 1.08997 * 109.47659 * 299.99980 * 18 16 15 39 39 H 0.96997 * 120.00260 * 180.02562 * 22 21 19 40 40 H 1.08994 * 110.79322 * 282.87424 * 27 8 7 41 41 H 1.08998 * 110.79147 * 46.34411 * 27 8 7 42 42 H 1.08000 * 120.10539 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2894 2.3752 0.0005 5 6 1.9114 3.6098 0.0064 6 6 3.2889 3.6934 0.0059 7 6 4.0581 2.5284 0.0001 8 6 5.5321 2.6137 -0.0010 9 7 6.3475 1.6130 -0.0067 10 8 7.7046 2.0099 -0.0134 11 6 7.7572 3.3900 0.4015 12 1 8.5322 3.9313 -0.1412 13 6 7.9688 3.4983 1.8896 14 8 8.0051 2.4959 2.5714 15 7 8.1176 4.7090 2.4628 16 6 8.3239 4.8141 3.9094 17 1 7.7531 4.0355 4.4154 18 6 9.8110 4.6439 4.2263 19 6 7.8604 6.1666 4.3859 20 1 7.4532 6.8769 3.6815 21 6 7.9560 6.4971 5.7210 22 7 8.4513 5.6320 6.5788 23 14 7.3821 8.1738 6.3115 24 1 5.9389 8.3398 6.0033 25 1 7.5899 8.2799 7.7781 26 1 8.1605 9.2344 5.6227 27 6 6.3484 3.8922 -0.0023 28 6 3.4286 1.2829 -0.0058 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2110 2.3161 0.0014 33 1 1.3174 4.5118 0.0110 34 1 3.7716 4.6596 0.0109 35 1 8.0889 5.5106 1.9174 36 1 10.3818 5.4226 3.7203 37 1 9.9644 4.7217 5.3026 38 1 10.1463 3.6657 3.8817 39 1 8.5183 5.8644 7.5182 40 1 6.3645 4.3400 -0.9959 41 1 5.9642 4.5973 0.7348 42 1 4.0182 0.3780 -0.0107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194202830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:36 Heat of formation + Delta-G solvation = -50.486774 kcal Electronic energy + Delta-G solvation = -25957.314623 eV Core-core repulsion = 22096.946626 eV Total energy + Delta-G solvation = -3860.367996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.89126 -41.03303 -39.81426 -38.40987 -36.74593 -34.64052 -34.42568 -32.52336 -31.74425 -30.93583 -30.35861 -28.14538 -27.36389 -25.94033 -24.42604 -23.45914 -22.78604 -21.38333 -21.04198 -19.46320 -18.81380 -17.96745 -17.46512 -17.29747 -17.04982 -16.91924 -16.68388 -16.46051 -16.25405 -15.59511 -15.51754 -14.82770 -14.61110 -14.54738 -14.46774 -14.27516 -13.86830 -13.64544 -13.44888 -13.07162 -13.01018 -12.96501 -12.81484 -12.72804 -12.71119 -12.28267 -12.21641 -12.14944 -11.94901 -11.79085 -11.48807 -11.14199 -10.62469 -10.48144 -9.85915 -9.76331 -9.24845 -8.16995 -6.35737 -0.40217 0.39369 1.15178 1.46888 1.49273 1.52382 1.57378 1.95493 2.23525 2.28967 2.48723 2.75539 2.98219 3.13767 3.29120 3.36585 3.79188 3.81573 3.99234 4.10712 4.17355 4.26789 4.40762 4.41362 4.45911 4.49617 4.61784 4.67240 4.71826 4.74494 4.88166 4.90811 5.06144 5.21205 5.34031 5.38580 5.40724 5.56526 5.64087 5.66474 5.86092 6.06365 6.22430 6.39087 6.71171 6.85385 7.30315 7.46936 8.89495 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.003196 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.778263 B = 8759.580960 C = 9965.815853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.342 6.342 3 C 0.111 3.889 4 C -0.183 4.183 5 C -0.076 4.076 6 C -0.117 4.117 7 C -0.021 4.021 8 C 0.126 3.874 9 N -0.319 5.319 10 O -0.196 6.196 11 C 0.026 3.974 12 H 0.183 0.817 13 C 0.479 3.521 14 O -0.592 6.592 15 N -0.691 5.691 16 C 0.272 3.728 17 H -0.009 1.009 18 C -0.136 4.136 19 C -0.544 4.544 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.976 3.024 24 H -0.266 1.266 25 H -0.291 1.291 26 H -0.261 1.261 27 C -0.125 4.125 28 C -0.142 4.142 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.161 0.839 35 H 0.411 0.589 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.006 0.994 39 H 0.265 0.735 40 H 0.167 0.833 41 H 0.124 0.876 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.279 1.705 -18.599 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.256 6.256 3 C 0.066 3.934 4 C -0.202 4.202 5 C -0.093 4.093 6 C -0.137 4.137 7 C -0.022 4.022 8 C -0.064 4.064 9 N -0.061 5.061 10 O -0.213 6.213 11 C -0.036 4.036 12 H 0.200 0.800 13 C 0.265 3.735 14 O -0.473 6.473 15 N -0.342 5.342 16 C 0.168 3.832 17 H 0.009 0.991 18 C -0.195 4.195 19 C -0.582 4.582 20 H 0.101 0.899 21 C -0.189 4.189 22 N -0.560 5.560 23 Si 0.800 3.200 24 H -0.191 1.191 25 H -0.217 1.217 26 H -0.185 1.185 27 C -0.164 4.164 28 C -0.163 4.163 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.086 0.914 32 H 0.180 0.820 33 H 0.189 0.811 34 H 0.178 0.822 35 H 0.248 0.752 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.184 0.816 41 H 0.143 0.857 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.749 -0.439 -17.982 24.578 hybrid contribution 0.193 1.149 0.868 1.453 sum -16.556 0.710 -17.114 23.822 Atomic orbital electron populations 1.23401 0.75942 1.05677 1.02703 1.86075 1.23943 1.26850 1.88752 1.18947 0.91473 0.85640 0.97325 1.21802 1.01761 0.91546 1.05083 1.21346 0.93826 0.98419 0.95750 1.21535 0.94480 0.97451 1.00272 1.17643 0.86583 0.94263 1.03733 1.24737 0.94627 0.93749 0.93251 1.78432 0.89334 1.23605 1.14756 1.91264 1.17595 1.27029 1.85367 1.23988 1.02648 0.85401 0.91559 0.80041 1.21563 0.76874 0.83848 0.91229 1.90694 1.52601 1.38137 1.65840 1.46158 1.70499 1.07372 1.10150 1.18351 0.92612 0.96109 0.76101 0.99066 1.21923 0.98050 0.96694 1.02805 1.21506 1.42764 0.99651 0.94282 0.89912 1.25879 0.94802 1.01441 0.96742 1.70071 1.45373 1.37058 1.03486 0.85340 0.79125 0.78788 0.76750 1.19118 1.21713 1.18541 1.23154 0.88128 0.96731 1.08401 1.20547 0.92811 0.97780 1.05177 0.90791 0.86704 0.91435 0.81985 0.81085 0.82167 0.75232 0.93461 0.91515 0.97518 0.92617 0.81565 0.85745 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -7.43 10.49 -92.51 -0.97 -8.40 16 3 C 0.11 2.51 6.68 22.47 0.15 2.66 16 4 C -0.18 -2.81 9.03 22.42 0.20 -2.61 16 5 C -0.08 -1.02 10.03 22.22 0.22 -0.80 16 6 C -0.12 -2.03 9.61 22.54 0.22 -1.82 16 7 C -0.02 -0.53 5.87 -20.14 -0.12 -0.65 16 8 C 0.13 3.63 7.15 45.77 0.33 3.95 16 9 N -0.32 -11.80 12.11 -42.22 -0.51 -12.31 16 10 O -0.20 -7.38 11.82 -20.30 -0.24 -7.62 16 11 C 0.03 0.76 4.22 30.50 0.13 0.89 16 12 H 0.18 3.56 8.14 -2.39 -0.02 3.54 16 13 C 0.48 19.82 7.12 87.65 0.62 20.45 16 14 O -0.59 -32.23 16.25 14.98 0.24 -31.99 16 15 N -0.69 -27.50 5.07 -446.10 -2.26 -29.77 16 16 C 0.27 14.02 2.56 44.24 0.11 14.14 16 17 H -0.01 -0.54 7.58 -2.39 -0.02 -0.56 16 18 C -0.14 -6.99 9.26 71.98 0.67 -6.32 16 19 C -0.54 -27.73 8.73 25.60 0.22 -27.51 16 20 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 21 C 0.01 0.59 5.30 84.65 0.45 1.04 16 22 N -0.92 -52.95 11.32 21.45 0.24 -52.71 16 23 Si 0.98 40.56 29.54 68.60 2.03 42.59 16 24 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 25 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 27 C -0.13 -2.64 5.83 30.82 0.18 -2.46 16 28 C -0.14 -3.94 9.62 22.64 0.22 -3.72 16 29 H 0.07 0.52 7.66 -2.38 -0.02 0.50 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 32 H 0.16 1.40 6.28 -2.91 -0.02 1.39 16 33 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.16 1.84 7.36 -2.91 -0.02 1.82 16 35 H 0.41 12.51 8.54 -92.71 -0.79 11.72 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.07 3.76 6.07 -2.38 -0.01 3.75 16 38 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.17 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.12 2.38 7.72 -2.39 -0.02 2.36 16 42 H 0.11 3.62 7.84 -2.91 -0.02 3.60 16 Total: -1.00 -83.86 360.26 3.51 -80.35 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.27 Total: 21.33 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 4.72 Total: -1.47 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -2.53 Total: -94.78 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.97 Total: -48.01 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -83.86 3.51 -80.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194202830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.862 kcal (2) G-P(sol) polarization free energy of solvation -83.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds