Wall clock time and date at job start Tue Mar 31 2020 12:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35904 * 116.99579 * 2 1 4 4 C 1.38858 * 119.98875 * 359.97438 * 3 2 1 5 5 C 1.38241 * 120.25168 * 179.97438 * 4 3 2 6 6 C 1.38010 * 120.20630 * 359.76492 * 5 4 3 7 7 C 1.39604 * 119.95955 * 0.50824 * 6 5 4 8 8 C 1.47650 * 120.12303 * 179.74427 * 7 6 5 9 9 N 1.29082 * 125.86790 * 179.69869 * 8 7 6 10 10 O 1.41392 * 112.87202 * 180.32137 * 9 8 7 11 11 C 1.44202 * 107.59689 * 342.50621 * 10 9 8 12 12 H 1.08997 * 110.97205 * 143.56069 * 11 10 9 13 13 C 1.50698 * 110.97423 * 267.28752 * 11 10 9 14 14 O 1.21285 * 120.00172 * 3.55229 * 13 11 10 15 15 N 1.34773 * 120.00176 * 183.54285 * 13 11 10 16 16 C 1.46507 * 120.00337 * 180.02562 * 15 13 11 17 17 H 1.09001 * 109.46896 * 325.00217 * 16 15 13 18 18 C 1.52999 * 109.47144 * 85.00358 * 16 15 13 19 19 C 1.50697 * 109.47006 * 205.00517 * 16 15 13 20 20 H 1.07991 * 120.00449 * 359.72165 * 19 16 15 21 21 C 1.37885 * 119.99686 * 179.97438 * 19 16 15 22 22 N 1.31516 * 119.99913 * 359.72095 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.72528 * 21 19 16 24 24 H 1.48498 * 109.47416 * 59.99812 * 23 21 19 25 25 H 1.48508 * 109.46609 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46903 * 299.99397 * 23 21 19 27 27 C 1.51687 * 125.86462 * 359.70429 * 8 7 6 28 28 C 1.38453 * 119.97888 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47040 * 299.99875 * 1 2 3 30 30 H 1.09001 * 109.47300 * 59.99889 * 1 2 3 31 31 H 1.08996 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.87586 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.89884 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.01673 * 180.26199 * 6 5 4 35 35 H 0.96999 * 120.00410 * 0.02562 * 15 13 11 36 36 H 1.09007 * 109.46899 * 300.00475 * 18 16 15 37 37 H 1.08993 * 109.47037 * 60.00126 * 18 16 15 38 38 H 1.08997 * 109.47084 * 180.02562 * 18 16 15 39 39 H 0.97000 * 119.99651 * 180.02562 * 22 21 19 40 40 H 1.08998 * 110.79524 * 77.12757 * 27 8 7 41 41 H 1.08998 * 110.79486 * 313.65590 * 27 8 7 42 42 H 1.08001 * 120.10358 * 359.95403 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3753 -0.0005 5 6 1.9112 3.6100 0.0000 6 6 3.2888 3.6936 0.0060 7 6 4.0580 2.5286 0.0007 8 6 5.5320 2.6139 0.0014 9 7 6.3475 1.6133 0.0024 10 8 7.7045 2.0103 0.0101 11 6 7.7568 3.3921 -0.3988 12 1 8.5321 3.9310 0.1457 13 6 7.9677 3.5067 -1.8866 14 8 8.0038 2.5073 -2.5728 15 7 8.1162 4.7198 -2.4547 16 6 8.3207 4.8313 -3.9011 17 1 8.9152 3.9870 -4.2501 18 6 6.9647 4.8279 -4.6097 19 6 9.0449 6.1167 -4.2084 20 1 9.3208 6.7860 -3.4070 21 6 9.3506 6.4407 -5.5133 22 7 9.0150 5.6255 -6.4892 23 14 10.2414 8.0377 -5.8949 24 1 11.5564 8.0480 -5.2051 25 1 10.4498 8.1500 -7.3609 26 1 9.4254 9.1848 -5.4221 27 6 6.3482 3.8924 0.0011 28 6 3.4286 1.2830 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2110 2.3162 -0.0005 33 1 1.3172 4.5119 0.0000 34 1 3.7714 4.6598 0.0106 35 1 8.0877 5.5192 -1.9059 36 1 6.4409 3.8982 -4.3873 37 1 6.3703 5.6722 -4.2606 38 1 7.1169 4.9104 -5.6858 39 1 9.2304 5.8533 -7.4071 40 1 6.3646 4.3413 0.9942 41 1 5.9639 4.5967 -0.7367 42 1 4.0182 0.3781 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194202870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:45 Heat of formation + Delta-G solvation = -26.072894 kcal Electronic energy + Delta-G solvation = -25969.913243 eV Core-core repulsion = 22110.603912 eV Total energy + Delta-G solvation = -3859.309331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74537 -40.15645 -38.30550 -37.56419 -34.84166 -33.56919 -32.57305 -31.32537 -30.74655 -30.04342 -28.68526 -27.59385 -25.30852 -24.65412 -23.52765 -22.54184 -21.21246 -20.15110 -19.55525 -18.16611 -17.65895 -16.68349 -16.44210 -16.18058 -16.04415 -15.89697 -15.40915 -15.05088 -14.83406 -14.27099 -14.07314 -13.83142 -13.77803 -13.34525 -13.21413 -12.83741 -12.50300 -12.41925 -12.28083 -11.99866 -11.95222 -11.66288 -11.48497 -11.23611 -11.13814 -10.98690 -10.82967 -10.73180 -10.40581 -10.30289 -10.26436 -9.14162 -9.10552 -8.71302 -8.58563 -8.45549 -8.00886 -6.15574 -4.25648 0.48738 1.15398 2.10788 2.81765 2.96171 3.22958 3.28640 3.29467 3.30546 3.54376 3.79783 3.94458 4.30469 4.34319 4.47838 4.48152 4.67089 4.76872 4.81063 4.91610 5.01564 5.10343 5.15004 5.16789 5.22880 5.23111 5.45566 5.49993 5.57960 5.75979 5.95478 6.08616 6.20283 6.35830 6.76668 6.90144 7.07034 7.09340 7.29596 7.37533 7.49633 7.63719 7.85872 8.09869 8.54976 8.72144 9.00668 9.41653 10.90435 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.002815 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.698430 B = 9944.707757 C =10564.979451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.124 3.876 4 C -0.193 4.193 5 C -0.081 4.081 6 C -0.123 4.123 7 C 0.006 3.994 8 C 0.114 3.886 9 N -0.264 5.264 10 O -0.163 6.163 11 C 0.022 3.978 12 H 0.138 0.862 13 C 0.485 3.515 14 O -0.528 6.528 15 N -0.704 5.704 16 C 0.265 3.735 17 H 0.049 0.951 18 C -0.146 4.146 19 C -0.536 4.536 20 H 0.061 0.939 21 C 0.066 3.934 22 N -0.883 5.883 23 Si 0.903 3.097 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.136 4.136 28 C -0.113 4.113 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.389 0.611 36 H 0.013 0.987 37 H 0.027 0.973 38 H 0.091 0.909 39 H 0.266 0.734 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.333 -2.066 16.302 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.079 3.921 4 C -0.213 4.213 5 C -0.099 4.099 6 C -0.144 4.144 7 C 0.005 3.995 8 C -0.076 4.076 9 N -0.003 5.003 10 O -0.182 6.182 11 C -0.040 4.040 12 H 0.155 0.845 13 C 0.267 3.733 14 O -0.405 6.405 15 N -0.353 5.353 16 C 0.164 3.836 17 H 0.067 0.933 18 C -0.205 4.205 19 C -0.574 4.574 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.175 4.175 28 C -0.134 4.134 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.221 0.779 36 H 0.032 0.968 37 H 0.046 0.954 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.841 -4.240 15.613 23.353 hybrid contribution 0.282 2.372 -0.146 2.393 sum -16.559 -1.868 15.467 22.736 Atomic orbital electron populations 1.23083 0.78237 1.04125 1.01373 1.86110 1.21463 1.26588 1.88691 1.18817 0.91897 0.84453 0.96900 1.21393 1.00269 0.92329 1.07309 1.20847 0.94119 0.97237 0.97706 1.21160 0.93771 0.97535 1.01888 1.17469 0.87280 0.93316 1.01427 1.24112 0.93765 0.92999 0.96720 1.78390 0.89395 1.22013 1.10505 1.91305 1.16337 1.25197 1.85388 1.23773 0.98945 0.85502 0.95826 0.84495 1.20518 0.78863 0.85064 0.88846 1.90724 1.49900 1.36367 1.63479 1.46502 1.70843 1.06096 1.11900 1.18774 0.93746 0.98005 0.73072 0.93315 1.22073 0.97181 0.96667 1.04579 1.21149 1.38392 1.04910 0.92954 0.92052 1.24900 0.95540 0.97263 0.96005 1.69897 1.45793 1.36291 0.99990 0.86488 0.80076 0.83059 0.77346 1.20136 1.21106 1.20149 1.22956 0.91322 0.97928 1.05309 1.20560 0.91637 0.98192 1.02980 0.92590 0.92494 0.88119 0.85101 0.84913 0.84859 0.77909 0.96756 0.95416 0.89068 0.92438 0.86833 0.87092 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.33 10.49 -19.44 -0.20 -3.54 16 3 C 0.12 1.38 6.68 -39.27 -0.26 1.12 16 4 C -0.19 -1.70 9.03 -39.35 -0.36 -2.06 16 5 C -0.08 -0.68 10.03 -39.66 -0.40 -1.08 16 6 C -0.12 -1.21 9.61 -39.16 -0.38 -1.59 16 7 C 0.01 0.08 5.87 -105.05 -0.62 -0.54 16 8 C 0.11 1.63 7.16 -79.42 -0.57 1.06 16 9 N -0.26 -4.62 12.11 35.30 0.43 -4.19 16 10 O -0.16 -3.00 11.82 -30.20 -0.36 -3.35 16 11 C 0.02 0.34 4.23 -26.97 -0.11 0.23 16 12 H 0.14 1.60 8.14 -51.93 -0.42 1.18 16 13 C 0.48 9.92 7.10 -10.99 -0.08 9.84 16 14 O -0.53 -13.60 16.25 -13.28 -0.22 -13.82 16 15 N -0.70 -14.24 5.07 -54.93 -0.28 -14.52 16 16 C 0.27 6.72 2.56 -69.08 -0.18 6.54 16 17 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 18 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 19 C -0.54 -13.95 8.73 -34.44 -0.30 -14.25 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.81 11.33 55.43 0.63 -24.19 16 23 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 C -0.14 -1.60 5.80 -26.48 -0.15 -1.75 16 28 C -0.11 -1.46 9.62 -39.01 -0.38 -1.83 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.13 0.80 6.28 -52.48 -0.33 0.47 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.13 1.02 7.37 -52.49 -0.39 0.64 16 35 H 0.39 6.44 8.54 -40.82 -0.35 6.09 16 36 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 2.46 6.08 -51.93 -0.32 2.15 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.11 1.22 7.73 -51.93 -0.40 0.82 16 42 H 0.14 1.94 7.84 -52.49 -0.41 1.53 16 LS Contribution 360.27 15.07 5.43 5.43 Total: -1.00 -35.02 360.27 -7.58 -42.61 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.46 Total: 4.98 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -2.53 Total: -4.76 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.78 Total: -42.90 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.78 Total: -20.71 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.02 -7.58 -42.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194202870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.536 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds