Wall clock time and date at job start Tue Mar 31 2020 12:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35904 * 116.99579 * 2 1 4 4 C 1.38858 * 119.98875 * 359.97438 * 3 2 1 5 5 C 1.38241 * 120.25168 * 179.97438 * 4 3 2 6 6 C 1.38010 * 120.20630 * 359.76492 * 5 4 3 7 7 C 1.39604 * 119.95955 * 0.50824 * 6 5 4 8 8 C 1.47650 * 120.12303 * 179.74427 * 7 6 5 9 9 N 1.29082 * 125.86790 * 179.69869 * 8 7 6 10 10 O 1.41392 * 112.87202 * 180.32137 * 9 8 7 11 11 C 1.44202 * 107.59689 * 342.50621 * 10 9 8 12 12 H 1.08997 * 110.97205 * 143.56069 * 11 10 9 13 13 C 1.50698 * 110.97423 * 267.28752 * 11 10 9 14 14 O 1.21285 * 120.00172 * 3.55229 * 13 11 10 15 15 N 1.34773 * 120.00176 * 183.54285 * 13 11 10 16 16 C 1.46507 * 120.00337 * 180.02562 * 15 13 11 17 17 H 1.09001 * 109.46896 * 325.00217 * 16 15 13 18 18 C 1.52999 * 109.47144 * 85.00358 * 16 15 13 19 19 C 1.50697 * 109.47006 * 205.00517 * 16 15 13 20 20 H 1.07991 * 120.00449 * 359.72165 * 19 16 15 21 21 C 1.37885 * 119.99686 * 179.97438 * 19 16 15 22 22 N 1.31516 * 119.99913 * 359.72095 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.72528 * 21 19 16 24 24 H 1.48498 * 109.47416 * 59.99812 * 23 21 19 25 25 H 1.48508 * 109.46609 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46903 * 299.99397 * 23 21 19 27 27 C 1.51687 * 125.86462 * 359.70429 * 8 7 6 28 28 C 1.38453 * 119.97888 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47040 * 299.99875 * 1 2 3 30 30 H 1.09001 * 109.47300 * 59.99889 * 1 2 3 31 31 H 1.08996 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.87586 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.89884 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.01673 * 180.26199 * 6 5 4 35 35 H 0.96999 * 120.00410 * 0.02562 * 15 13 11 36 36 H 1.09007 * 109.46899 * 300.00475 * 18 16 15 37 37 H 1.08993 * 109.47037 * 60.00126 * 18 16 15 38 38 H 1.08997 * 109.47084 * 180.02562 * 18 16 15 39 39 H 0.97000 * 119.99651 * 180.02562 * 22 21 19 40 40 H 1.08998 * 110.79524 * 77.12757 * 27 8 7 41 41 H 1.08998 * 110.79486 * 313.65590 * 27 8 7 42 42 H 1.08001 * 120.10358 * 359.95403 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3753 -0.0005 5 6 1.9112 3.6100 0.0000 6 6 3.2888 3.6936 0.0060 7 6 4.0580 2.5286 0.0007 8 6 5.5320 2.6139 0.0014 9 7 6.3475 1.6133 0.0024 10 8 7.7045 2.0103 0.0101 11 6 7.7568 3.3921 -0.3988 12 1 8.5321 3.9310 0.1457 13 6 7.9677 3.5067 -1.8866 14 8 8.0038 2.5073 -2.5728 15 7 8.1162 4.7198 -2.4547 16 6 8.3207 4.8313 -3.9011 17 1 8.9152 3.9870 -4.2501 18 6 6.9647 4.8279 -4.6097 19 6 9.0449 6.1167 -4.2084 20 1 9.3208 6.7860 -3.4070 21 6 9.3506 6.4407 -5.5133 22 7 9.0150 5.6255 -6.4892 23 14 10.2414 8.0377 -5.8949 24 1 11.5564 8.0480 -5.2051 25 1 10.4498 8.1500 -7.3609 26 1 9.4254 9.1848 -5.4221 27 6 6.3482 3.8924 0.0011 28 6 3.4286 1.2830 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2110 2.3162 -0.0005 33 1 1.3172 4.5119 0.0000 34 1 3.7714 4.6598 0.0106 35 1 8.0877 5.5192 -1.9059 36 1 6.4409 3.8982 -4.3873 37 1 6.3703 5.6722 -4.2606 38 1 7.1169 4.9104 -5.6858 39 1 9.2304 5.8533 -7.4071 40 1 6.3646 4.3413 0.9942 41 1 5.9639 4.5967 -0.7367 42 1 4.0182 0.3781 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194202870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:45 Heat of formation + Delta-G solvation = -50.610146 kcal Electronic energy + Delta-G solvation = -25970.977258 eV Core-core repulsion = 22110.603912 eV Total energy + Delta-G solvation = -3860.373346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90008 -41.03206 -39.81185 -38.40868 -36.74924 -34.64212 -34.42943 -32.52468 -31.74375 -30.93280 -30.38019 -28.14377 -27.35995 -25.92432 -24.41774 -23.46447 -22.81846 -21.35235 -21.04298 -19.45329 -18.81657 -18.02795 -17.47778 -17.32709 -16.94489 -16.91850 -16.68274 -16.44892 -16.21140 -15.76974 -15.41623 -14.84524 -14.63220 -14.54388 -14.44009 -14.29719 -13.81840 -13.63642 -13.47624 -13.08891 -12.99319 -12.98057 -12.82020 -12.75298 -12.69427 -12.28594 -12.21737 -12.15092 -11.94664 -11.78712 -11.49321 -11.14946 -10.63391 -10.47405 -9.85678 -9.76609 -9.24630 -8.17867 -6.36327 -0.39888 0.39652 1.15507 1.46040 1.48687 1.52393 1.56668 1.95595 2.23265 2.28583 2.48508 2.75775 2.97857 3.12777 3.29030 3.36656 3.79278 3.81685 3.99558 4.11064 4.17593 4.26991 4.40486 4.41556 4.46052 4.49698 4.61915 4.67273 4.71937 4.74784 4.87187 4.91088 5.05617 5.21617 5.34376 5.38870 5.40872 5.56084 5.63808 5.66939 5.86441 6.06249 6.22471 6.39360 6.70746 6.85234 7.29847 7.46674 8.88551 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.002815 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.698430 B = 9944.707757 C =10564.979451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.342 6.342 3 C 0.111 3.889 4 C -0.183 4.183 5 C -0.075 4.075 6 C -0.117 4.117 7 C -0.021 4.021 8 C 0.126 3.874 9 N -0.319 5.319 10 O -0.197 6.197 11 C 0.026 3.974 12 H 0.181 0.819 13 C 0.479 3.521 14 O -0.592 6.592 15 N -0.691 5.691 16 C 0.271 3.729 17 H -0.010 1.010 18 C -0.131 4.131 19 C -0.545 4.545 20 H 0.081 0.919 21 C 0.012 3.988 22 N -0.921 5.921 23 Si 0.976 3.024 24 H -0.271 1.271 25 H -0.290 1.290 26 H -0.259 1.259 27 C -0.125 4.125 28 C -0.143 4.143 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.162 0.838 35 H 0.411 0.589 36 H 0.003 0.997 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.265 0.735 40 H 0.166 0.834 41 H 0.126 0.874 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.426 1.795 18.294 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.066 3.934 4 C -0.202 4.202 5 C -0.093 4.093 6 C -0.137 4.137 7 C -0.022 4.022 8 C -0.063 4.063 9 N -0.061 5.061 10 O -0.213 6.213 11 C -0.036 4.036 12 H 0.198 0.802 13 C 0.265 3.735 14 O -0.473 6.473 15 N -0.342 5.342 16 C 0.168 3.832 17 H 0.008 0.992 18 C -0.190 4.190 19 C -0.583 4.583 20 H 0.099 0.901 21 C -0.188 4.188 22 N -0.559 5.559 23 Si 0.800 3.200 24 H -0.196 1.196 25 H -0.216 1.216 26 H -0.183 1.183 27 C -0.163 4.163 28 C -0.163 4.163 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.180 0.820 33 H 0.190 0.810 34 H 0.179 0.821 35 H 0.248 0.752 36 H 0.022 0.978 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.184 0.816 41 H 0.144 0.856 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.933 -0.344 17.662 25.895 hybrid contribution 0.758 1.099 -0.766 1.539 sum -18.176 0.756 16.896 24.827 Atomic orbital electron populations 1.23401 0.75931 1.05677 1.02713 1.86079 1.23956 1.26888 1.88753 1.18948 0.91465 0.85639 0.97328 1.21803 1.01760 0.91560 1.05079 1.21349 0.93832 0.98393 0.95724 1.21535 0.94445 0.97428 1.00264 1.17640 0.86528 0.94274 1.03761 1.24738 0.94629 0.93692 0.93241 1.78432 0.89302 1.23663 1.14736 1.91270 1.17661 1.26844 1.85563 1.23955 1.02677 0.85380 0.91613 0.80211 1.21575 0.76898 0.83812 0.91252 1.90695 1.52465 1.38447 1.65679 1.46155 1.70456 1.07377 1.10193 1.18358 0.93108 0.95835 0.75939 0.99187 1.21877 0.97193 0.96962 1.02987 1.21503 1.38193 1.04978 0.93623 0.90144 1.25865 0.96277 1.00762 0.95906 1.70071 1.47083 1.38374 1.00347 0.85345 0.78943 0.78991 0.76738 1.19611 1.21560 1.18324 1.23115 0.88012 0.96758 1.08463 1.20549 0.92816 0.97795 1.05189 0.90794 0.91399 0.86729 0.82006 0.81035 0.82067 0.75235 0.97768 0.93117 0.91620 0.92582 0.81603 0.85596 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -7.27 10.49 -92.46 -0.97 -8.24 16 3 C 0.11 2.43 6.68 22.47 0.15 2.58 16 4 C -0.18 -2.67 9.03 22.42 0.20 -2.46 16 5 C -0.08 -0.94 10.03 22.22 0.22 -0.72 16 6 C -0.12 -1.89 9.61 22.55 0.22 -1.68 16 7 C -0.02 -0.51 5.87 -20.14 -0.12 -0.63 16 8 C 0.13 3.56 7.16 45.77 0.33 3.89 16 9 N -0.32 -11.70 12.11 -42.23 -0.51 -12.21 16 10 O -0.20 -7.44 11.82 -20.31 -0.24 -7.68 16 11 C 0.03 0.75 4.23 30.44 0.13 0.88 16 12 H 0.18 3.62 8.14 -2.39 -0.02 3.60 16 13 C 0.48 19.83 7.10 87.66 0.62 20.45 16 14 O -0.59 -32.27 16.25 14.96 0.24 -32.02 16 15 N -0.69 -27.52 5.07 -446.09 -2.26 -29.78 16 16 C 0.27 13.99 2.56 44.24 0.11 14.11 16 17 H -0.01 -0.62 7.58 -2.39 -0.02 -0.64 16 18 C -0.13 -6.63 9.26 71.98 0.67 -5.97 16 19 C -0.54 -28.05 8.73 25.60 0.22 -27.82 16 20 H 0.08 3.75 7.74 -2.92 -0.02 3.72 16 21 C 0.01 0.63 5.30 84.66 0.45 1.08 16 22 N -0.92 -52.95 11.33 21.45 0.24 -52.70 16 23 Si 0.98 41.05 29.54 68.60 2.03 43.08 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 27 C -0.12 -2.56 5.80 30.76 0.18 -2.38 16 28 C -0.14 -3.86 9.62 22.64 0.22 -3.64 16 29 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 30 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.16 1.28 6.28 -2.91 -0.02 1.27 16 33 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.16 1.64 7.37 -2.91 -0.02 1.62 16 35 H 0.41 12.52 8.54 -92.71 -0.79 11.73 16 36 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 37 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.07 3.66 6.08 -2.39 -0.01 3.64 16 39 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.17 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.13 2.26 7.73 -2.39 -0.02 2.24 16 42 H 0.11 3.54 7.84 -2.91 -0.02 3.52 16 Total: -1.00 -84.33 360.27 3.51 -80.82 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.27 Total: 19.76 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 4.71 Total: -1.02 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -2.53 Total: -94.69 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -0.97 Total: -47.95 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -84.33 3.51 -80.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194202870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.214 kcal (2) G-P(sol) polarization free energy of solvation -84.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds