Wall clock time and date at job start Tue Mar 31 2020 12:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47135 * 2 1 4 4 C 1.50703 * 109.46740 * 240.00411 * 2 1 3 5 5 H 1.08005 * 119.99664 * 245.45828 * 4 2 1 6 6 C 1.37874 * 120.00246 * 65.46135 * 4 2 1 7 7 N 1.31509 * 120.00157 * 9.55541 * 6 4 2 8 8 Si 1.86801 * 120.00116 * 189.55692 * 6 4 2 9 9 H 1.48506 * 109.46950 * 84.99206 * 8 6 4 10 10 H 1.48499 * 109.47574 * 204.99480 * 8 6 4 11 11 H 1.48508 * 109.47172 * 324.99728 * 8 6 4 12 12 N 1.46494 * 109.47094 * 120.00302 * 2 1 3 13 13 C 1.34767 * 120.00137 * 274.99915 * 12 2 1 14 14 O 1.21286 * 119.99960 * 0.02562 * 13 12 2 15 15 C 1.50708 * 120.00346 * 180.02562 * 13 12 2 16 16 N 1.46494 * 109.47209 * 179.97438 * 15 13 12 17 17 C 1.40211 * 120.51115 * 90.00029 * 16 15 13 18 18 C 1.38509 * 120.73711 * 15.48304 * 17 16 15 19 19 C 1.38282 * 119.81810 * 180.02562 * 18 17 16 20 20 C 1.38279 * 120.19563 * 359.97438 * 19 18 17 21 21 C 1.38315 * 120.26120 * 359.97438 * 20 19 18 22 22 C 1.38388 * 119.87552 * 359.97438 * 21 20 19 23 23 O 1.35988 * 120.67359 * 180.12596 * 22 21 20 24 24 C 1.43007 * 116.71214 * 147.16776 * 23 22 21 25 25 H 1.08995 * 109.41629 * 286.36719 * 24 23 22 26 26 C 1.53004 * 109.44185 * 166.44944 * 24 23 22 27 27 C 1.35093 * 120.51078 * 269.97633 * 16 15 13 28 28 O 1.21297 * 120.13461 * 1.66789 * 27 16 15 29 29 H 1.09003 * 109.46902 * 63.67678 * 1 2 3 30 30 H 1.08997 * 109.47025 * 183.67211 * 1 2 3 31 31 H 1.08999 * 109.46623 * 303.67778 * 1 2 3 32 32 H 0.96999 * 120.00446 * 179.97438 * 7 6 4 33 33 H 0.97007 * 119.99485 * 94.99675 * 12 2 1 34 34 H 1.09002 * 109.46603 * 59.99606 * 15 13 12 35 35 H 1.09003 * 109.46827 * 299.99936 * 15 13 12 36 36 H 1.08002 * 120.09026 * 0.05239 * 18 17 16 37 37 H 1.07996 * 119.90359 * 179.97438 * 19 18 17 38 38 H 1.08006 * 119.86734 * 180.26839 * 20 19 18 39 39 H 1.08004 * 120.06379 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46986 * 299.83929 * 26 24 23 41 41 H 1.09006 * 109.46448 * 59.83545 * 26 24 23 42 42 H 1.08996 * 109.46790 * 179.83104 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5786 -1.6370 -1.1340 6 6 1.7946 -0.1773 -2.4796 7 7 1.2993 1.0357 -2.5935 8 14 2.1759 -1.1779 -4.0103 9 1 1.0238 -2.0608 -4.3242 10 1 2.4226 -0.2613 -5.1523 11 1 3.3844 -2.0072 -3.7712 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8582 1.1583 2.4117 15 6 2.6500 -0.7287 3.5874 16 7 2.6998 0.2127 4.7087 17 6 1.5895 0.3784 5.5488 18 6 0.5570 -0.5449 5.5480 19 6 -0.5292 -0.3624 6.3840 20 6 -0.5866 0.7377 7.2198 21 6 0.4418 1.6627 7.2260 22 6 1.5327 1.4863 6.3930 23 8 2.5539 2.3842 6.3877 24 6 3.8628 1.8676 6.1327 25 1 4.2159 1.3259 7.0101 26 6 4.8170 3.0247 5.8303 27 6 3.8162 0.9341 4.9495 28 8 4.7784 0.8294 4.2184 29 1 -0.3633 0.4557 -0.9211 30 1 -0.3633 -1.0255 0.0658 31 1 -0.3632 0.5699 0.8552 32 1 1.1323 1.4109 -3.4723 33 1 2.2490 -1.6319 1.1524 34 1 3.6493 -1.1206 3.3977 35 1 1.9778 -1.5511 3.8324 36 1 0.6005 -1.4052 4.8965 37 1 -1.3352 -1.0813 6.3842 38 1 -1.4355 0.8727 7.8738 39 1 0.3939 2.5205 7.8804 40 1 4.4649 3.5661 4.9522 41 1 4.8504 3.7008 6.6848 42 1 5.8155 2.6317 5.6388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194714985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:53 Heat of formation + Delta-G solvation = -69.042258 kcal Electronic energy + Delta-G solvation = -27068.760379 eV Core-core repulsion = 23207.587756 eV Total energy + Delta-G solvation = -3861.172623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70700 -39.17144 -38.72388 -37.62291 -35.68773 -34.67411 -32.41494 -32.23828 -30.41189 -30.23680 -29.05161 -27.69553 -25.23749 -24.24259 -23.44128 -22.70886 -21.18175 -19.65412 -19.40047 -19.30732 -17.69554 -17.16793 -16.94028 -16.14168 -15.56928 -15.47212 -15.08325 -14.84903 -14.80603 -14.50907 -14.39281 -13.93358 -13.74771 -13.29807 -13.12391 -12.85194 -12.43660 -12.41072 -12.30757 -12.10794 -12.00394 -11.69087 -11.31493 -11.28041 -11.05953 -11.01456 -10.78688 -10.72553 -10.38420 -10.29100 -9.94430 -9.17069 -9.11876 -8.76982 -8.51676 -7.98112 -7.87464 -6.14935 -4.20900 0.98950 1.14248 2.23175 2.37838 3.13616 3.24492 3.26600 3.31592 3.33261 3.55800 3.88346 4.06298 4.37503 4.49294 4.59635 4.68612 4.81087 4.92321 5.07266 5.16144 5.18875 5.23449 5.34585 5.37562 5.50745 5.53282 5.60730 5.84806 5.96789 6.02637 6.23367 6.32307 6.51820 6.72736 6.80868 6.85588 7.05309 7.25144 7.38490 7.50496 7.64763 7.70599 7.83222 8.04666 8.60478 8.77387 9.05873 9.44902 10.93592 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.003538 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.391499 B = 7912.461743 C = 8772.135726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.264 3.736 3 H 0.054 0.946 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.705 5.705 13 C 0.487 3.513 14 O -0.539 6.539 15 C 0.084 3.916 16 N -0.531 5.531 17 C 0.112 3.888 18 C -0.126 4.126 19 C -0.109 4.109 20 C -0.117 4.117 21 C -0.110 4.110 22 C 0.081 3.919 23 O -0.300 6.300 24 C 0.084 3.916 25 H 0.101 0.899 26 C -0.136 4.136 27 C 0.494 3.506 28 O -0.498 6.498 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.018 0.982 32 H 0.265 0.735 33 H 0.389 0.611 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -3.546 22.208 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.162 3.838 3 H 0.072 0.928 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.517 5.517 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.354 5.354 13 C 0.269 3.731 14 O -0.416 6.416 15 C -0.041 4.041 16 N -0.255 5.255 17 C 0.017 3.983 18 C -0.147 4.147 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.129 4.129 22 C 0.035 3.965 23 O -0.215 6.215 24 C 0.024 3.976 25 H 0.119 0.881 26 C -0.193 4.193 27 C 0.282 3.718 28 O -0.371 6.371 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.101 -2.393 21.633 21.765 hybrid contribution 0.200 -1.221 -1.222 1.739 sum 0.301 -3.614 20.411 20.731 Atomic orbital electron populations 1.22000 0.98768 0.98538 1.00525 1.18764 0.90555 0.94578 0.79902 0.92773 1.21155 1.37320 1.08708 0.90385 0.92022 1.24893 0.94936 0.94620 0.99067 1.69985 1.43741 1.13725 1.24269 0.86509 0.78721 0.79930 0.82224 1.20397 1.21138 1.19870 1.46454 1.65127 1.13520 1.10289 1.20593 0.79423 0.88082 0.84998 1.90698 1.50437 1.15708 1.84787 1.21648 1.05187 0.91872 0.85412 1.45173 1.11908 1.41007 1.27368 1.18095 0.90154 0.96486 0.93542 1.20694 0.93704 0.98877 1.01393 1.20953 0.97535 0.98327 0.96001 1.20945 0.98338 0.94321 0.99944 1.20489 0.93132 1.00932 0.98318 1.18590 0.91206 0.89224 0.97487 1.86230 1.13939 1.33221 1.88137 1.22616 0.83577 0.96081 0.95291 0.88134 1.21724 0.97771 0.96147 1.03644 1.21479 0.82392 0.80517 0.87437 1.90761 1.34896 1.63878 1.47614 0.90848 0.95224 0.96256 0.92519 0.77907 0.86460 0.87152 0.85024 0.85141 0.85044 0.84521 0.90689 0.90293 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.36 37.16 0.35 -3.10 16 2 C 0.26 6.84 2.42 -69.08 -0.17 6.67 16 3 H 0.05 1.67 7.52 -51.93 -0.39 1.27 16 4 C -0.54 -14.43 8.66 -34.44 -0.30 -14.73 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.88 5.17 -17.82 -0.09 1.79 16 7 N -0.88 -25.47 12.16 55.43 0.67 -24.79 16 8 Si 0.90 20.84 29.55 -169.99 -5.02 15.81 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 12 N -0.71 -14.82 5.07 -54.93 -0.28 -15.10 16 13 C 0.49 10.06 7.86 -10.99 -0.09 9.98 16 14 O -0.54 -13.71 16.09 5.55 0.09 -13.62 16 15 C 0.08 1.28 5.68 -5.19 -0.03 1.25 16 16 N -0.53 -8.39 2.21 -114.48 -0.25 -8.64 16 17 C 0.11 1.60 6.39 -83.49 -0.53 1.07 16 18 C -0.13 -1.50 9.36 -39.47 -0.37 -1.87 16 19 C -0.11 -1.07 10.04 -39.55 -0.40 -1.47 16 20 C -0.12 -1.08 10.04 -39.54 -0.40 -1.48 16 21 C -0.11 -1.19 10.00 -39.50 -0.39 -1.58 16 22 C 0.08 1.11 6.44 -39.09 -0.25 0.86 16 23 O -0.30 -4.21 10.09 -19.70 -0.20 -4.41 16 24 C 0.08 1.06 3.69 -27.84 -0.10 0.96 16 25 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 26 C -0.14 -1.51 9.14 37.16 0.34 -1.17 16 27 C 0.49 8.04 7.37 -10.81 -0.08 7.96 16 28 O -0.50 -9.37 15.83 5.54 0.09 -9.29 16 29 H 0.07 1.96 6.83 -51.93 -0.35 1.60 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.39 6.82 8.53 -40.82 -0.35 6.47 16 34 H 0.12 1.66 7.49 -51.93 -0.39 1.27 16 35 H 0.11 1.24 5.96 -51.93 -0.31 0.93 16 36 H 0.13 1.36 6.12 -52.49 -0.32 1.04 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.95 7.86 -51.93 -0.41 0.54 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -35.53 355.19 -7.51 -43.03 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.44 Total: 6.52 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -2.51 Total: 5.14 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.14 Total: -48.54 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.02 Total: -27.32 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.53 -7.51 -43.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194714985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.008 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds