Wall clock time and date at job start Tue Mar 31 2020 12:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47135 * 2 1 4 4 C 1.50703 * 109.46740 * 240.00411 * 2 1 3 5 5 H 1.08005 * 119.99664 * 245.45828 * 4 2 1 6 6 C 1.37874 * 120.00246 * 65.46135 * 4 2 1 7 7 N 1.31509 * 120.00157 * 9.55541 * 6 4 2 8 8 Si 1.86801 * 120.00116 * 189.55692 * 6 4 2 9 9 H 1.48506 * 109.46950 * 84.99206 * 8 6 4 10 10 H 1.48499 * 109.47574 * 204.99480 * 8 6 4 11 11 H 1.48508 * 109.47172 * 324.99728 * 8 6 4 12 12 N 1.46494 * 109.47094 * 120.00302 * 2 1 3 13 13 C 1.34767 * 120.00137 * 274.99915 * 12 2 1 14 14 O 1.21286 * 119.99960 * 0.02562 * 13 12 2 15 15 C 1.50708 * 120.00346 * 180.02562 * 13 12 2 16 16 N 1.46494 * 109.47209 * 179.97438 * 15 13 12 17 17 C 1.40211 * 120.51115 * 90.00029 * 16 15 13 18 18 C 1.38509 * 120.73711 * 15.48304 * 17 16 15 19 19 C 1.38282 * 119.81810 * 180.02562 * 18 17 16 20 20 C 1.38279 * 120.19563 * 359.97438 * 19 18 17 21 21 C 1.38315 * 120.26120 * 359.97438 * 20 19 18 22 22 C 1.38388 * 119.87552 * 359.97438 * 21 20 19 23 23 O 1.35988 * 120.67359 * 180.12596 * 22 21 20 24 24 C 1.43007 * 116.71214 * 147.16776 * 23 22 21 25 25 H 1.08995 * 109.41629 * 286.36719 * 24 23 22 26 26 C 1.53004 * 109.44185 * 166.44944 * 24 23 22 27 27 C 1.35093 * 120.51078 * 269.97633 * 16 15 13 28 28 O 1.21297 * 120.13461 * 1.66789 * 27 16 15 29 29 H 1.09003 * 109.46902 * 63.67678 * 1 2 3 30 30 H 1.08997 * 109.47025 * 183.67211 * 1 2 3 31 31 H 1.08999 * 109.46623 * 303.67778 * 1 2 3 32 32 H 0.96999 * 120.00446 * 179.97438 * 7 6 4 33 33 H 0.97007 * 119.99485 * 94.99675 * 12 2 1 34 34 H 1.09002 * 109.46603 * 59.99606 * 15 13 12 35 35 H 1.09003 * 109.46827 * 299.99936 * 15 13 12 36 36 H 1.08002 * 120.09026 * 0.05239 * 18 17 16 37 37 H 1.07996 * 119.90359 * 179.97438 * 19 18 17 38 38 H 1.08006 * 119.86734 * 180.26839 * 20 19 18 39 39 H 1.08004 * 120.06379 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46986 * 299.83929 * 26 24 23 41 41 H 1.09006 * 109.46448 * 59.83545 * 26 24 23 42 42 H 1.08996 * 109.46790 * 179.83104 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5786 -1.6370 -1.1340 6 6 1.7946 -0.1773 -2.4796 7 7 1.2993 1.0357 -2.5935 8 14 2.1759 -1.1779 -4.0103 9 1 1.0238 -2.0608 -4.3242 10 1 2.4226 -0.2613 -5.1523 11 1 3.3844 -2.0072 -3.7712 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8582 1.1583 2.4117 15 6 2.6500 -0.7287 3.5874 16 7 2.6998 0.2127 4.7087 17 6 1.5895 0.3784 5.5488 18 6 0.5570 -0.5449 5.5480 19 6 -0.5292 -0.3624 6.3840 20 6 -0.5866 0.7377 7.2198 21 6 0.4418 1.6627 7.2260 22 6 1.5327 1.4863 6.3930 23 8 2.5539 2.3842 6.3877 24 6 3.8628 1.8676 6.1327 25 1 4.2159 1.3259 7.0101 26 6 4.8170 3.0247 5.8303 27 6 3.8162 0.9341 4.9495 28 8 4.7784 0.8294 4.2184 29 1 -0.3633 0.4557 -0.9211 30 1 -0.3633 -1.0255 0.0658 31 1 -0.3632 0.5699 0.8552 32 1 1.1323 1.4109 -3.4723 33 1 2.2490 -1.6319 1.1524 34 1 3.6493 -1.1206 3.3977 35 1 1.9778 -1.5511 3.8324 36 1 0.6005 -1.4052 4.8965 37 1 -1.3352 -1.0813 6.3842 38 1 -1.4355 0.8727 7.8738 39 1 0.3939 2.5205 7.8804 40 1 4.4649 3.5661 4.9522 41 1 4.8504 3.7008 6.6848 42 1 5.8155 2.6317 5.6388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194714985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:52 Heat of formation + Delta-G solvation = -94.056494 kcal Electronic energy + Delta-G solvation = -27069.845077 eV Core-core repulsion = 23207.587756 eV Total energy + Delta-G solvation = -3862.257321 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.76689 -40.64208 -39.95801 -38.66310 -37.01952 -36.43585 -34.39993 -33.18238 -31.82188 -31.25530 -30.37826 -28.96716 -27.34375 -25.37946 -24.37638 -23.78740 -22.83822 -21.36561 -20.50314 -20.34075 -19.23492 -18.31368 -18.20898 -17.62825 -17.22345 -16.67526 -16.45628 -16.24287 -16.05492 -15.71924 -15.52599 -15.26802 -15.01472 -14.66196 -14.39399 -14.24768 -13.99327 -13.81182 -13.34390 -13.29056 -13.18437 -12.97123 -12.91185 -12.83737 -12.71069 -12.39893 -12.23371 -12.18359 -12.15152 -11.86439 -11.21903 -11.08405 -10.78170 -10.61098 -9.86574 -9.65922 -8.89505 -8.24027 -6.38651 0.06428 0.30444 1.06291 1.34280 1.42693 1.43964 1.53905 1.64489 2.19058 2.32387 2.53346 2.74733 2.87588 3.08122 3.57015 3.66080 3.78246 3.84125 3.91763 4.02528 4.09592 4.28764 4.37981 4.48651 4.58901 4.66959 4.67621 4.76375 4.82489 4.95637 4.97763 5.06465 5.24374 5.28890 5.35844 5.52744 5.53627 5.57093 5.71793 5.78757 5.83370 5.97565 6.27141 6.52525 6.69290 6.84629 7.27174 7.44994 8.85360 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.003538 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.391499 B = 7912.461743 C = 8772.135726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.269 3.731 3 H -0.007 1.007 4 C -0.550 4.550 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.973 3.027 9 H -0.266 1.266 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.698 5.698 13 C 0.482 3.518 14 O -0.593 6.593 15 C 0.094 3.906 16 N -0.536 5.536 17 C 0.075 3.925 18 C -0.134 4.134 19 C -0.108 4.108 20 C -0.105 4.105 21 C -0.114 4.114 22 C 0.054 3.946 23 O -0.314 6.314 24 C 0.084 3.916 25 H 0.135 0.865 26 C -0.132 4.132 27 C 0.480 3.520 28 O -0.539 6.539 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.013 0.987 32 H 0.266 0.734 33 H 0.409 0.591 34 H 0.129 0.871 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.156 0.844 40 H 0.043 0.957 41 H 0.109 0.891 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 -5.949 23.933 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.166 3.834 3 H 0.011 0.989 4 C -0.588 4.588 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.797 3.203 9 H -0.191 1.191 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.348 5.348 13 C 0.267 3.733 14 O -0.474 6.474 15 C -0.031 4.031 16 N -0.259 5.259 17 C -0.018 4.018 18 C -0.154 4.154 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.132 4.132 22 C 0.008 3.992 23 O -0.229 6.229 24 C 0.025 3.975 25 H 0.153 0.847 26 C -0.189 4.189 27 C 0.269 3.731 28 O -0.416 6.416 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.244 0.756 34 H 0.146 0.854 35 H 0.174 0.826 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.186 0.814 39 H 0.174 0.826 40 H 0.063 0.937 41 H 0.128 0.872 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.966 -4.848 23.407 23.923 hybrid contribution 0.429 -0.426 -1.665 1.772 sum -0.537 -5.274 21.741 22.378 Atomic orbital electron populations 1.21787 0.97891 0.99618 0.98899 1.18357 0.91200 0.91925 0.81938 0.98939 1.21516 1.37357 1.09113 0.90793 0.90540 1.25854 0.94653 0.95468 1.02575 1.70147 1.45059 1.15627 1.25022 0.85352 0.79120 0.78235 0.77607 1.19097 1.21471 1.18717 1.46182 1.65000 1.14345 1.09311 1.21575 0.77967 0.87556 0.86153 1.90670 1.52638 1.18349 1.85773 1.21669 1.06474 0.92128 0.82838 1.45280 1.12424 1.40893 1.27332 1.18455 0.90725 0.98095 0.94554 1.21014 0.93610 0.98841 1.01969 1.21400 0.97397 0.98957 0.94865 1.21437 0.98461 0.93109 0.99374 1.20874 0.92492 1.01915 0.97954 1.19032 0.92011 0.89441 0.98674 1.86192 1.14492 1.33994 1.88271 1.22823 0.83590 0.96050 0.95017 0.84734 1.21749 0.97518 0.96062 1.03549 1.22259 0.82096 0.80614 0.88108 1.90720 1.36287 1.65350 1.49231 0.93353 0.92654 0.96817 0.92543 0.75570 0.85364 0.82620 0.83749 0.81991 0.81431 0.82626 0.93733 0.87242 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.20 9.36 71.98 0.67 -5.52 16 2 C 0.27 14.39 2.42 44.25 0.11 14.49 16 3 H -0.01 -0.48 7.52 -2.39 -0.02 -0.50 16 4 C -0.55 -29.65 8.66 25.60 0.22 -29.43 16 5 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 6 C 0.01 0.81 5.17 84.65 0.44 1.25 16 7 N -0.92 -54.85 12.16 21.45 0.26 -54.59 16 8 Si 0.97 42.56 29.55 68.60 2.03 44.59 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 12 N -0.70 -29.53 5.07 -446.10 -2.26 -31.79 16 13 C 0.48 20.32 7.86 87.66 0.69 21.01 16 14 O -0.59 -31.70 16.09 -3.05 -0.05 -31.75 16 15 C 0.09 2.79 5.68 85.64 0.49 3.28 16 16 N -0.54 -16.97 2.21 -634.31 -1.40 -18.37 16 17 C 0.08 2.10 6.39 38.14 0.24 2.34 16 18 C -0.13 -2.90 9.36 22.34 0.21 -2.69 16 19 C -0.11 -1.73 10.04 22.29 0.22 -1.51 16 20 C -0.11 -1.57 10.04 22.30 0.22 -1.35 16 21 C -0.11 -2.21 10.00 22.32 0.22 -1.99 16 22 C 0.05 1.45 6.44 22.59 0.15 1.59 16 23 O -0.31 -8.82 10.09 -93.42 -0.94 -9.76 16 24 C 0.08 2.14 3.69 29.87 0.11 2.25 16 25 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 26 C -0.13 -2.99 9.14 71.98 0.66 -2.33 16 27 C 0.48 16.05 7.37 87.63 0.65 16.70 16 28 O -0.54 -21.17 15.83 -3.08 -0.05 -21.22 16 29 H 0.05 2.65 6.83 -2.39 -0.02 2.63 16 30 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.41 13.86 8.53 -92.70 -0.79 13.07 16 34 H 0.13 3.55 7.49 -2.39 -0.02 3.54 16 35 H 0.16 3.10 5.96 -2.39 -0.01 3.09 16 36 H 0.14 2.57 6.12 -2.91 -0.02 2.55 16 37 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.10 2.06 7.86 -2.39 -0.02 2.04 16 Total: -1.00 -82.69 355.19 3.15 -79.53 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.27 Total: 25.26 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 5.30 Total: 18.08 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -3.40 Total: -104.75 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: -1.04 Total: -62.72 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -82.69 3.15 -79.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194714985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.523 kcal (2) G-P(sol) polarization free energy of solvation -82.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds