Wall clock time and date at job start Tue Mar 31 2020 12:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 N 1.46507 * 109.46925 * 179.97438 * 16 15 13 18 18 C 1.35082 * 120.50792 * 269.72538 * 17 16 15 19 19 O 1.21292 * 120.13422 * 1.67889 * 18 17 16 20 20 C 1.50740 * 119.74477 * 181.43654 * 18 17 16 21 21 O 1.42993 * 109.74188 * 329.15068 * 20 18 17 22 22 C 1.35987 * 116.71630 * 46.19586 * 21 20 18 23 23 C 1.38394 * 120.66860 * 147.13336 * 22 21 20 24 24 C 1.38313 * 119.87335 * 180.02562 * 23 22 21 25 25 C 1.38276 * 120.25892 * 359.97438 * 24 23 22 26 26 C 1.38294 * 120.20023 * 359.97438 * 25 24 23 27 27 C 1.38505 * 119.81325 * 0.02752 * 26 25 24 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 33 33 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 34 34 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 35 35 H 1.09000 * 109.47282 * 299.99596 * 16 15 13 36 36 H 1.09000 * 109.47246 * 59.99983 * 16 15 13 37 37 H 1.08999 * 109.55516 * 208.96511 * 20 18 17 38 38 H 1.08999 * 109.20200 * 89.11431 * 20 18 17 39 39 H 1.07994 * 120.05950 * 0.10911 * 23 22 21 40 40 H 1.08003 * 119.87204 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.90381 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.09544 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 7 3.1889 -0.4359 5.9552 18 6 2.3239 -1.0359 6.8016 19 8 1.1352 -1.0333 6.5606 20 6 2.8423 -1.7136 8.0443 21 8 4.1547 -2.2273 7.8027 22 6 5.0322 -1.3949 7.1812 23 6 6.3839 -1.4484 7.4734 24 6 7.2618 -0.5936 6.8318 25 6 6.7943 0.3139 5.8991 26 6 5.4451 0.3726 5.6011 27 6 4.5610 -0.4807 6.2403 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.2490 -1.6316 1.1527 33 1 1.9776 -1.5506 3.8326 34 1 3.6492 -1.1202 3.3980 35 1 3.3726 1.0773 4.5141 36 1 1.7011 0.6461 4.9483 37 1 2.1768 -2.5324 8.3179 38 1 2.8802 -0.9896 8.8582 39 1 6.7526 -2.1572 8.1999 40 1 8.3167 -0.6357 7.0595 41 1 7.4849 0.9785 5.4013 42 1 5.0818 1.0824 4.8727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194719022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:33 Heat of formation + Delta-G solvation = -75.641590 kcal Electronic energy + Delta-G solvation = -26242.972068 eV Core-core repulsion = 22381.513277 eV Total energy + Delta-G solvation = -3861.458791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.81781 -39.25601 -38.88553 -37.87906 -36.08371 -34.82137 -32.45439 -31.79164 -30.95579 -30.07975 -29.04907 -27.69600 -25.28092 -24.75721 -23.62316 -22.33130 -20.90031 -19.72230 -19.43271 -19.38737 -17.68753 -17.22625 -17.07463 -16.13697 -15.70195 -15.57864 -15.26599 -15.19183 -15.00139 -14.70393 -14.46585 -14.27529 -14.14456 -13.51149 -13.29453 -12.90757 -12.76100 -12.48675 -12.36343 -12.18436 -11.68721 -11.62494 -11.49670 -11.12475 -11.08201 -10.94728 -10.73635 -10.65952 -10.33951 -10.24054 -10.17880 -9.12609 -9.06476 -8.97138 -8.56312 -8.12539 -7.94159 -6.13319 -4.22929 0.77264 0.94996 2.04990 2.23676 2.95438 3.24791 3.29933 3.30864 3.34016 3.39262 3.67195 4.09126 4.33529 4.37910 4.56196 4.64056 4.75680 4.87152 4.94100 4.96529 5.02097 5.17015 5.18803 5.30127 5.44301 5.60343 5.68947 5.75680 5.88911 5.94447 6.13653 6.17260 6.31237 6.63137 6.82203 6.96895 7.04686 7.14497 7.43447 7.48730 7.53877 7.67830 7.89949 8.13943 8.63136 8.75441 9.07937 9.44515 10.92609 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.002861 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.022740 B = 9784.887025 C =10592.541960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.707 5.707 13 C 0.507 3.493 14 O -0.558 6.558 15 C -0.157 4.157 16 C 0.125 3.875 17 N -0.550 5.550 18 C 0.484 3.516 19 O -0.502 6.502 20 C 0.053 3.947 21 O -0.303 6.303 22 C 0.073 3.927 23 C -0.109 4.109 24 C -0.115 4.115 25 C -0.107 4.107 26 C -0.123 4.123 27 C 0.101 3.899 28 H 0.090 0.910 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.145 0.855 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.447 -4.565 21.948 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.354 5.354 13 C 0.291 3.709 14 O -0.437 6.437 15 C -0.199 4.199 16 C 0.004 3.996 17 N -0.274 5.274 18 C 0.272 3.728 19 O -0.376 6.376 20 C -0.025 4.025 21 O -0.218 6.218 22 C 0.026 3.974 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.126 4.126 26 C -0.144 4.144 27 C 0.006 3.994 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.163 0.837 38 H 0.115 0.885 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.397 -3.780 21.716 24.372 hybrid contribution 0.247 -0.814 -1.051 1.352 sum 10.643 -4.594 20.666 23.695 Atomic orbital electron populations 1.22083 0.98444 0.99159 1.00942 1.18751 0.91063 0.93962 0.79947 0.93324 1.21187 1.32581 1.13273 0.90362 0.92130 1.24894 0.94782 0.94954 0.99064 1.69895 1.35740 1.22431 1.24015 0.86496 0.79157 0.79606 0.81767 1.21100 1.20154 1.20150 1.46533 1.64750 1.13589 1.10532 1.20124 0.78772 0.87415 0.84551 1.90663 1.51746 1.16086 1.85247 1.21972 1.03494 1.00172 0.94215 1.21467 1.02706 0.94111 0.81290 1.45853 1.04304 1.53088 1.24204 1.21559 0.86780 0.78791 0.85700 1.90813 1.15136 1.57464 1.74155 1.23197 0.83132 1.01569 0.94649 1.86225 1.20961 1.38743 1.75851 1.18625 0.90639 0.92953 0.95152 1.20515 0.89824 1.00898 1.01543 1.21003 0.99719 0.95741 0.96896 1.21049 0.94638 0.99029 0.97882 1.20864 0.93056 0.98968 1.01499 1.18168 0.83832 0.98755 0.98622 0.89104 0.95473 0.96616 0.92490 0.77855 0.88999 0.89086 0.88526 0.87964 0.83731 0.88482 0.84486 0.84945 0.84948 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 2 C 0.26 6.80 2.56 -69.09 -0.18 6.62 16 3 H 0.05 1.43 7.58 -51.92 -0.39 1.04 16 4 C -0.54 -14.29 8.73 -34.44 -0.30 -14.59 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.71 -14.88 5.07 -54.93 -0.28 -15.16 16 13 C 0.51 10.06 7.79 -10.98 -0.09 9.98 16 14 O -0.56 -13.04 15.65 5.56 0.09 -12.96 16 15 C -0.16 -2.34 6.02 -27.88 -0.17 -2.51 16 16 C 0.13 1.76 4.49 -4.04 -0.02 1.75 16 17 N -0.55 -6.86 2.72 -113.22 -0.31 -7.17 16 18 C 0.48 6.09 7.67 -10.83 -0.08 6.00 16 19 O -0.50 -7.96 16.76 5.55 0.09 -7.87 16 20 C 0.05 0.45 7.16 36.03 0.26 0.71 16 21 O -0.30 -3.02 10.45 -19.70 -0.21 -3.22 16 22 C 0.07 0.73 6.44 -39.09 -0.25 0.48 16 23 C -0.11 -0.87 10.00 -39.50 -0.39 -1.27 16 24 C -0.11 -0.81 10.04 -39.54 -0.40 -1.20 16 25 C -0.11 -0.85 10.04 -39.55 -0.40 -1.24 16 26 C -0.12 -1.21 9.36 -39.46 -0.37 -1.58 16 27 C 0.10 1.11 6.39 -83.49 -0.53 0.58 16 28 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.39 7.15 8.54 -40.82 -0.35 6.80 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.10 1.28 5.92 -51.93 -0.31 0.97 16 36 H 0.10 1.64 7.44 -51.93 -0.39 1.25 16 37 H 0.15 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.14 1.34 6.12 -52.49 -0.32 1.02 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -33.08 354.83 -7.74 -40.83 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.42 Total: 6.92 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.67 Total: 2.01 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.04 Total: -46.73 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.03 Total: -24.05 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.08 -7.74 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194719022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.812 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds