Wall clock time and date at job start Tue Mar 31 2020 12:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 N 1.46507 * 109.46925 * 179.97438 * 16 15 13 18 18 C 1.35082 * 120.50792 * 269.72538 * 17 16 15 19 19 O 1.21292 * 120.13422 * 1.67889 * 18 17 16 20 20 C 1.50740 * 119.74477 * 181.43654 * 18 17 16 21 21 O 1.42993 * 109.74188 * 329.15068 * 20 18 17 22 22 C 1.35987 * 116.71630 * 46.19586 * 21 20 18 23 23 C 1.38394 * 120.66860 * 147.13336 * 22 21 20 24 24 C 1.38313 * 119.87335 * 180.02562 * 23 22 21 25 25 C 1.38276 * 120.25892 * 359.97438 * 24 23 22 26 26 C 1.38294 * 120.20023 * 359.97438 * 25 24 23 27 27 C 1.38505 * 119.81325 * 0.02752 * 26 25 24 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 33 33 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 34 34 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 35 35 H 1.09000 * 109.47282 * 299.99596 * 16 15 13 36 36 H 1.09000 * 109.47246 * 59.99983 * 16 15 13 37 37 H 1.08999 * 109.55516 * 208.96511 * 20 18 17 38 38 H 1.08999 * 109.20200 * 89.11431 * 20 18 17 39 39 H 1.07994 * 120.05950 * 0.10911 * 23 22 21 40 40 H 1.08003 * 119.87204 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.90381 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.09544 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 7 3.1889 -0.4359 5.9552 18 6 2.3239 -1.0359 6.8016 19 8 1.1352 -1.0333 6.5606 20 6 2.8423 -1.7136 8.0443 21 8 4.1547 -2.2273 7.8027 22 6 5.0322 -1.3949 7.1812 23 6 6.3839 -1.4484 7.4734 24 6 7.2618 -0.5936 6.8318 25 6 6.7943 0.3139 5.8991 26 6 5.4451 0.3726 5.6011 27 6 4.5610 -0.4807 6.2403 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.2490 -1.6316 1.1527 33 1 1.9776 -1.5506 3.8326 34 1 3.6492 -1.1202 3.3980 35 1 3.3726 1.0773 4.5141 36 1 1.7011 0.6461 4.9483 37 1 2.1768 -2.5324 8.3179 38 1 2.8802 -0.9896 8.8582 39 1 6.7526 -2.1572 8.1999 40 1 8.3167 -0.6357 7.0595 41 1 7.4849 0.9785 5.4013 42 1 5.0818 1.0824 4.8727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194719022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:32 Heat of formation + Delta-G solvation = -97.874128 kcal Electronic energy + Delta-G solvation = -26243.936143 eV Core-core repulsion = 22381.513277 eV Total energy + Delta-G solvation = -3862.422866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.64331 -40.70035 -39.97569 -38.63181 -37.13857 -36.65783 -34.37878 -33.07051 -31.63135 -30.89897 -30.74739 -28.66982 -27.37400 -25.84531 -24.43194 -23.37486 -22.51387 -21.20496 -20.52050 -20.18936 -19.10157 -18.33775 -18.00541 -17.52839 -17.20509 -16.75937 -16.52146 -16.37069 -16.04754 -15.90629 -15.53205 -15.30429 -15.12876 -14.70510 -14.47959 -14.41148 -14.03149 -13.96468 -13.63614 -13.39844 -13.01179 -12.94568 -12.88280 -12.75842 -12.40453 -12.30082 -12.21251 -12.17016 -12.11747 -11.58858 -11.15318 -11.09209 -10.82514 -10.60383 -9.81737 -9.66202 -8.91900 -8.19586 -6.37715 0.05331 0.29854 1.17942 1.31883 1.44148 1.46244 1.54221 1.70419 2.25443 2.34146 2.59349 2.75926 2.89507 3.10657 3.59187 3.68578 3.75950 3.92406 4.00939 4.03832 4.17591 4.23067 4.37189 4.40212 4.53908 4.57582 4.69558 4.71751 4.77178 4.88079 4.99813 5.05602 5.27143 5.30941 5.38984 5.55463 5.56847 5.63979 5.69184 5.83996 5.85307 6.06085 6.28411 6.55674 6.69328 6.87250 7.28634 7.46823 8.86656 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.002861 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.022740 B = 9784.887025 C =10592.541960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.002 0.998 4 C -0.550 4.550 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.286 1.286 10 H -0.268 1.268 11 H -0.265 1.265 12 N -0.704 5.704 13 C 0.506 3.494 14 O -0.596 6.596 15 C -0.136 4.136 16 C 0.131 3.869 17 N -0.550 5.550 18 C 0.476 3.524 19 O -0.546 6.546 20 C 0.060 3.940 21 O -0.308 6.308 22 C 0.061 3.939 23 C -0.108 4.108 24 C -0.103 4.103 25 C -0.109 4.109 26 C -0.136 4.136 27 C 0.075 3.925 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.010 0.990 31 H 0.266 0.734 32 H 0.405 0.595 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.167 0.833 38 H 0.122 0.878 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.153 0.847 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.138 -6.586 23.023 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.020 0.980 4 C -0.588 4.588 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.211 1.211 10 H -0.193 1.193 11 H -0.190 1.190 12 N -0.353 5.353 13 C 0.292 3.708 14 O -0.478 6.478 15 C -0.177 4.177 16 C 0.009 3.991 17 N -0.274 5.274 18 C 0.266 3.734 19 O -0.424 6.424 20 C -0.018 4.018 21 O -0.222 6.222 22 C 0.015 3.985 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.156 4.156 27 C -0.019 4.019 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.240 0.760 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.184 0.816 38 H 0.140 0.860 39 H 0.177 0.823 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.140 -5.836 22.830 26.980 hybrid contribution -0.500 -0.122 -1.317 1.414 sum 12.640 -5.958 21.513 25.653 Atomic orbital electron populations 1.21923 0.98541 0.99378 0.99594 1.18359 0.90961 0.92086 0.81869 0.97985 1.21518 1.32817 1.13687 0.90796 0.90822 1.25827 0.94798 0.95570 1.02387 1.70048 1.36848 1.23929 1.24755 0.85367 0.78755 0.78613 0.77429 1.21119 1.19330 1.18989 1.46303 1.64921 1.14267 1.09780 1.20896 0.77558 0.87004 0.85329 1.90644 1.53171 1.18119 1.85909 1.21817 1.04482 0.99717 0.91715 1.21208 1.01619 0.94268 0.82016 1.45801 1.05339 1.52800 1.23489 1.22373 0.86260 0.78231 0.86546 1.90787 1.16893 1.59351 1.75324 1.23359 0.82865 1.02645 0.92904 1.86215 1.21172 1.39045 1.75811 1.18898 0.91523 0.92916 0.95164 1.20879 0.88932 1.01167 1.01684 1.21416 1.01186 0.94197 0.95311 1.21357 0.93979 0.99427 0.97982 1.20973 0.94046 0.98948 1.01629 1.18365 0.82901 1.00346 1.00244 0.91283 0.94277 0.97074 0.92471 0.76014 0.88393 0.86626 0.88103 0.90546 0.81599 0.85994 0.82272 0.81712 0.82945 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.10 9.26 71.98 0.67 -6.44 16 2 C 0.27 14.29 2.56 44.24 0.11 14.40 16 3 H 0.00 0.14 7.58 -2.38 -0.02 0.12 16 4 C -0.55 -29.39 8.73 25.60 0.22 -29.17 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.78 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 8 Si 0.97 42.04 29.54 68.60 2.03 44.06 16 9 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 11 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 12 N -0.70 -29.91 5.07 -446.09 -2.26 -32.17 16 13 C 0.51 20.48 7.79 87.66 0.68 21.16 16 14 O -0.60 -29.14 15.65 -3.04 -0.05 -29.19 16 15 C -0.14 -4.05 6.02 29.85 0.18 -3.87 16 16 C 0.13 3.80 4.49 86.38 0.39 4.19 16 17 N -0.55 -13.70 2.72 -630.32 -1.71 -15.41 16 18 C 0.48 11.92 7.67 87.62 0.67 12.60 16 19 O -0.55 -17.81 16.76 -3.07 -0.05 -17.86 16 20 C 0.06 0.93 7.16 71.25 0.51 1.44 16 21 O -0.31 -5.46 10.45 -93.41 -0.98 -6.43 16 22 C 0.06 1.10 6.44 22.59 0.15 1.25 16 23 C -0.11 -1.37 10.00 22.32 0.22 -1.14 16 24 C -0.10 -1.06 10.04 22.30 0.22 -0.83 16 25 C -0.11 -1.43 10.04 22.29 0.22 -1.21 16 26 C -0.14 -2.52 9.36 22.35 0.21 -2.31 16 27 C 0.07 1.57 6.39 38.14 0.24 1.81 16 28 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.40 14.56 8.54 -92.71 -0.79 13.77 16 33 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.12 2.89 8.14 -2.39 -0.02 2.88 16 35 H 0.10 2.79 5.92 -2.39 -0.01 2.77 16 36 H 0.08 2.61 7.44 -2.39 -0.02 2.59 16 37 H 0.17 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 41 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 42 H 0.13 2.53 6.12 -2.91 -0.02 2.51 16 Total: -1.00 -74.06 354.83 2.64 -71.42 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.27 Total: 25.27 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 5.16 Total: 13.12 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -3.73 Total: -100.39 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -1.08 Total: -53.48 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -74.06 2.64 -71.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194719022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.454 kcal (2) G-P(sol) polarization free energy of solvation -74.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds