Wall clock time and date at job start Tue Mar 31 2020 13:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46932 * 2 1 4 4 C 1.46493 * 120.00189 * 269.99945 * 3 2 1 5 5 C 1.50699 * 109.46929 * 270.00125 * 4 3 2 6 6 H 1.08002 * 120.00336 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00137 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99595 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00406 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46988 * 89.99912 * 9 7 5 11 11 H 1.48496 * 109.47391 * 210.00337 * 9 7 5 12 12 H 1.48509 * 109.47052 * 330.00636 * 9 7 5 13 13 C 1.34783 * 119.99916 * 90.00087 * 3 2 1 14 14 O 1.21278 * 120.00108 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99772 * 359.97438 * 13 3 2 16 16 O 1.42902 * 109.46860 * 180.02562 * 15 13 3 17 17 C 1.35752 * 117.00005 * 180.02562 * 16 15 13 18 18 C 1.39123 * 119.86185 * 0.02562 * 17 16 15 19 19 C 1.37615 * 120.23681 * 179.97438 * 18 17 16 20 20 C 1.39827 * 119.96006 * 0.02562 * 19 18 17 21 21 C 1.43203 * 120.14234 * 179.97438 * 20 19 18 22 22 N 9.74718 * 89.47793 * 91.45741 * 2 1 3 23 23 C 1.40307 * 119.72649 * 359.97438 * 20 19 18 24 24 O 1.35697 * 120.11866 * 180.02562 * 23 20 19 25 25 C 1.42903 * 117.00035 * 180.02562 * 24 23 20 26 26 C 1.38417 * 119.75905 * 0.27626 * 23 20 19 27 27 H 1.08999 * 109.47099 * 299.99660 * 1 2 3 28 28 H 1.09000 * 109.46723 * 60.00455 * 1 2 3 29 29 H 1.09000 * 109.46633 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47667 * 239.99917 * 2 1 3 31 31 H 1.09007 * 109.46962 * 119.99817 * 2 1 3 32 32 H 1.09001 * 109.47197 * 29.99601 * 4 3 2 33 33 H 1.08995 * 109.47328 * 150.00404 * 4 3 2 34 34 H 0.97001 * 119.99867 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46972 * 60.00604 * 15 13 3 36 36 H 1.08996 * 109.47290 * 300.00455 * 15 13 3 37 37 H 1.08002 * 119.88399 * 359.97227 * 18 17 16 38 38 H 1.08008 * 120.01881 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.47382 * 179.97438 * 25 24 23 40 40 H 1.09001 * 109.46938 * 59.99665 * 25 24 23 41 41 H 1.09004 * 109.46926 * 299.99786 * 25 24 23 42 42 H 1.07998 * 119.98078 * 179.69750 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7036 6 1 4.3429 1.2309 -1.0956 7 6 4.1491 2.3897 -2.8778 8 7 3.3491 3.1258 -3.6180 9 14 5.9136 2.0968 -3.4167 10 1 5.9776 0.8754 -4.2590 11 1 6.3922 3.2640 -4.2001 12 1 6.7736 1.9180 -2.2193 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1599 1.1673 15 6 1.9912 1.3063 2.4724 16 8 2.3003 2.1820 3.5585 17 6 2.1274 1.6928 4.8130 18 6 1.6684 0.3917 4.9919 19 6 1.4909 -0.1123 6.2601 20 6 1.7717 0.6850 7.3740 21 6 1.5877 0.1647 8.6954 22 7 1.4412 -0.2479 9.7436 23 6 2.2344 1.9969 7.1916 24 8 2.5099 2.7774 8.2670 25 6 2.9766 4.1024 8.0045 26 6 2.4040 2.4939 5.9109 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 3.6752 3.5163 -4.4438 35 1 2.6212 0.4187 2.5303 36 1 0.9432 1.0125 2.5299 37 1 1.4507 -0.2251 4.1325 38 1 1.1340 -1.1227 6.3950 39 1 3.1579 4.6173 8.9479 40 1 2.2243 4.6460 7.4329 41 1 3.9031 4.0545 7.4323 42 1 2.7553 3.5049 5.7665 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195091577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:10 Heat of formation + Delta-G solvation = -49.284609 kcal Electronic energy + Delta-G solvation = -25612.038858 eV Core-core repulsion = 21751.722991 eV Total energy + Delta-G solvation = -3860.315867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.99102 -39.78531 -38.66408 -37.30735 -36.07978 -35.41828 -32.91379 -31.39341 -30.60655 -30.26081 -28.97417 -27.69380 -26.61052 -23.77506 -23.19195 -23.09324 -22.14895 -19.62240 -18.89877 -18.50305 -17.25434 -16.80972 -16.63370 -16.37522 -16.11038 -15.99241 -15.54399 -14.78900 -14.71121 -14.34086 -14.13428 -13.91397 -13.80041 -13.66301 -13.50986 -13.06401 -12.71767 -12.65890 -12.51253 -12.28171 -12.13787 -11.95791 -11.83680 -11.64420 -11.41170 -11.27189 -11.02465 -10.96242 -10.78086 -10.61802 -10.20590 -9.72797 -9.09566 -9.02084 -8.50278 -8.45650 -7.84325 -6.11445 -4.16597 0.56896 0.95171 2.53722 2.58272 2.72951 2.81047 3.14439 3.25869 3.33323 3.37619 3.56894 3.73400 3.91157 4.33792 4.39089 4.65276 4.67467 4.68178 4.85685 4.86171 4.90725 5.01500 5.02416 5.17948 5.21071 5.21311 5.23735 5.47044 5.52125 5.61437 5.82608 5.86455 5.89856 6.04516 6.09866 6.34553 6.75303 6.87847 7.07419 7.32171 7.40176 7.41355 7.84204 8.13676 8.20588 8.76692 8.91643 9.48742 10.96714 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.002628 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.259332 B =10653.110743 C =11384.459927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.517 6.517 15 C 0.037 3.963 16 O -0.278 6.278 17 C 0.209 3.791 18 C -0.249 4.249 19 C 0.012 3.988 20 C -0.112 4.112 21 C 0.273 3.727 22 N -0.433 5.433 23 C 0.216 3.784 24 O -0.307 6.307 25 C 0.021 3.979 26 C -0.247 4.247 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.556 -5.901 16.832 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.291 3.709 14 O -0.392 6.392 15 C -0.042 4.042 16 O -0.188 6.188 17 C 0.160 3.840 18 C -0.268 4.268 19 C -0.009 4.009 20 C -0.117 4.117 21 C -0.042 4.042 22 N -0.109 5.109 23 C 0.166 3.834 24 O -0.219 6.219 25 C -0.073 4.073 26 C -0.267 4.267 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.505 -5.621 18.384 19.997 hybrid contribution 1.021 -0.045 -1.117 1.514 sum -4.484 -5.666 17.266 18.717 Atomic orbital electron populations 1.22249 0.96494 1.01706 1.02538 1.21508 0.93729 0.83974 1.03011 1.48214 1.63796 1.13374 1.07151 1.19336 0.96514 0.93713 0.77510 1.21409 0.96824 1.32218 1.06363 0.92390 1.24936 0.97938 0.94816 0.96368 1.69927 1.35760 1.33223 1.14321 0.86486 0.84539 0.77719 0.78625 1.20609 1.21049 1.19849 1.19645 0.79851 0.87159 0.84219 1.90732 1.44319 1.17545 1.86638 1.22893 1.02205 0.93429 0.85654 1.86195 1.80542 1.40720 1.11321 1.19021 0.89055 0.91199 0.84735 1.21158 1.11129 0.95972 0.98580 1.20750 0.91992 0.98486 0.89656 1.15168 1.16575 0.92846 0.87103 1.25264 0.93157 0.93347 0.92417 1.81209 1.10212 1.08658 1.10855 1.18506 0.90353 0.88743 0.85751 1.86093 1.79612 1.26017 1.30174 1.23250 0.99756 0.80312 1.04005 1.20310 1.14530 1.02891 0.88940 0.93091 0.91735 0.91866 0.89386 0.91845 0.94609 0.93711 0.92624 0.88900 0.88990 0.83953 0.83888 0.87772 0.91679 0.91646 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.10 1.38 5.93 -4.04 -0.02 1.36 16 3 N -0.59 -11.34 2.46 -175.06 -0.43 -11.77 16 4 C 0.25 6.10 5.16 -5.20 -0.03 6.07 16 5 C -0.53 -14.34 9.39 -34.44 -0.32 -14.67 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 9 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.51 9.74 7.75 -10.98 -0.09 9.66 16 14 O -0.52 -12.65 16.08 -14.35 -0.23 -12.88 16 15 C 0.04 0.47 3.77 36.01 0.14 0.61 16 16 O -0.28 -3.96 9.66 -38.88 -0.38 -4.33 16 17 C 0.21 2.31 6.69 -39.08 -0.26 2.05 16 18 C -0.25 -2.10 9.01 -39.48 -0.36 -2.46 16 19 C 0.01 0.09 9.75 -39.21 -0.38 -0.29 16 20 C -0.11 -1.10 5.76 -106.60 -0.61 -1.71 16 21 C 0.27 3.15 14.87 -22.47 -0.33 2.82 16 22 N -0.43 -5.88 18.54 41.84 0.78 -5.11 16 23 C 0.22 2.17 6.69 -38.74 -0.26 1.91 16 24 O -0.31 -3.02 9.92 -18.80 -0.19 -3.21 16 25 C 0.02 0.14 9.81 101.05 0.99 1.13 16 26 C -0.25 -2.54 8.96 -39.34 -0.35 -2.90 16 27 H 0.05 0.52 7.22 -51.93 -0.37 0.15 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 31 H 0.06 0.65 6.44 -51.92 -0.33 0.31 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.47 16 33 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 35 H 0.09 0.96 6.91 -51.93 -0.36 0.61 16 36 H 0.09 0.90 6.69 -51.93 -0.35 0.55 16 37 H 0.14 0.89 6.27 -52.49 -0.33 0.57 16 38 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 41 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 42 H 0.15 1.41 6.29 -52.49 -0.33 1.08 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -34.85 367.32 -6.13 -40.99 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -5.33 Total: -4.07 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.61 Total: 3.66 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 1.08 Total: -41.88 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.79 Total: -20.42 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.85 -6.13 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195091577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.299 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds