Wall clock time and date at job start Tue Mar 31 2020 13:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46932 * 2 1 4 4 C 1.46493 * 120.00189 * 269.99945 * 3 2 1 5 5 C 1.50699 * 109.46929 * 270.00125 * 4 3 2 6 6 H 1.08002 * 120.00336 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00137 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99595 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00406 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46988 * 89.99912 * 9 7 5 11 11 H 1.48496 * 109.47391 * 210.00337 * 9 7 5 12 12 H 1.48509 * 109.47052 * 330.00636 * 9 7 5 13 13 C 1.34783 * 119.99916 * 90.00087 * 3 2 1 14 14 O 1.21278 * 120.00108 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99772 * 359.97438 * 13 3 2 16 16 O 1.42902 * 109.46860 * 180.02562 * 15 13 3 17 17 C 1.35752 * 117.00005 * 180.02562 * 16 15 13 18 18 C 1.39123 * 119.86185 * 0.02562 * 17 16 15 19 19 C 1.37615 * 120.23681 * 179.97438 * 18 17 16 20 20 C 1.39827 * 119.96006 * 0.02562 * 19 18 17 21 21 C 1.43203 * 120.14234 * 179.97438 * 20 19 18 22 22 N 9.74718 * 89.47793 * 91.45741 * 2 1 3 23 23 C 1.40307 * 119.72649 * 359.97438 * 20 19 18 24 24 O 1.35697 * 120.11866 * 180.02562 * 23 20 19 25 25 C 1.42903 * 117.00035 * 180.02562 * 24 23 20 26 26 C 1.38417 * 119.75905 * 0.27626 * 23 20 19 27 27 H 1.08999 * 109.47099 * 299.99660 * 1 2 3 28 28 H 1.09000 * 109.46723 * 60.00455 * 1 2 3 29 29 H 1.09000 * 109.46633 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47667 * 239.99917 * 2 1 3 31 31 H 1.09007 * 109.46962 * 119.99817 * 2 1 3 32 32 H 1.09001 * 109.47197 * 29.99601 * 4 3 2 33 33 H 1.08995 * 109.47328 * 150.00404 * 4 3 2 34 34 H 0.97001 * 119.99867 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46972 * 60.00604 * 15 13 3 36 36 H 1.08996 * 109.47290 * 300.00455 * 15 13 3 37 37 H 1.08002 * 119.88399 * 359.97227 * 18 17 16 38 38 H 1.08008 * 120.01881 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.47382 * 179.97438 * 25 24 23 40 40 H 1.09001 * 109.46938 * 59.99665 * 25 24 23 41 41 H 1.09004 * 109.46926 * 299.99786 * 25 24 23 42 42 H 1.07998 * 119.98078 * 179.69750 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7036 6 1 4.3429 1.2309 -1.0956 7 6 4.1491 2.3897 -2.8778 8 7 3.3491 3.1258 -3.6180 9 14 5.9136 2.0968 -3.4167 10 1 5.9776 0.8754 -4.2590 11 1 6.3922 3.2640 -4.2001 12 1 6.7736 1.9180 -2.2193 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1599 1.1673 15 6 1.9912 1.3063 2.4724 16 8 2.3003 2.1820 3.5585 17 6 2.1274 1.6928 4.8130 18 6 1.6684 0.3917 4.9919 19 6 1.4909 -0.1123 6.2601 20 6 1.7717 0.6850 7.3740 21 6 1.5877 0.1647 8.6954 22 7 1.4412 -0.2479 9.7436 23 6 2.2344 1.9969 7.1916 24 8 2.5099 2.7774 8.2670 25 6 2.9766 4.1024 8.0045 26 6 2.4040 2.4939 5.9109 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 3.6752 3.5163 -4.4438 35 1 2.6212 0.4187 2.5303 36 1 0.9432 1.0125 2.5299 37 1 1.4507 -0.2251 4.1325 38 1 1.1340 -1.1227 6.3950 39 1 3.1579 4.6173 8.9479 40 1 2.2243 4.6460 7.4329 41 1 3.9031 4.0545 7.4323 42 1 2.7553 3.5049 5.7665 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195091577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:09 Heat of formation + Delta-G solvation = -71.477259 kcal Electronic energy + Delta-G solvation = -25613.001203 eV Core-core repulsion = 21751.722991 eV Total energy + Delta-G solvation = -3861.278212 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.79505 -40.89553 -39.79390 -38.14217 -37.07506 -36.82850 -34.90866 -32.24805 -31.59465 -31.29256 -30.24007 -28.29828 -28.21992 -25.03329 -24.42915 -24.12550 -23.12961 -20.37996 -20.16076 -19.46016 -18.64566 -18.19825 -17.65390 -17.42992 -17.13934 -16.98536 -16.80706 -16.26292 -15.67335 -15.46847 -15.20895 -14.81254 -14.70356 -14.61570 -14.54280 -14.30546 -14.20030 -13.58811 -13.46428 -13.33657 -13.30024 -13.20851 -13.04430 -12.65837 -12.56947 -12.50969 -12.44388 -12.16558 -12.11265 -11.86918 -11.70880 -11.60695 -10.63144 -10.62523 -9.74035 -9.47547 -9.21168 -8.21384 -6.35621 -0.18947 0.29036 1.38279 1.41358 1.50378 1.57426 1.69525 1.72629 1.92078 2.14329 2.38435 2.65560 2.80716 2.96913 3.09001 3.48804 3.74927 3.90877 4.05511 4.08938 4.11319 4.19493 4.26012 4.37440 4.40986 4.47451 4.54223 4.69498 4.74147 4.85932 4.96533 5.03879 5.10368 5.17353 5.20325 5.24245 5.40214 5.46674 5.58360 5.83586 6.06701 6.07923 6.24711 6.55543 6.69754 6.76418 7.27972 7.43010 8.85790 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.002628 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.259332 B =10653.110743 C =11384.459927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.494 3.506 14 O -0.587 6.587 15 C 0.050 3.950 16 O -0.312 6.312 17 C 0.193 3.807 18 C -0.239 4.239 19 C 0.028 3.972 20 C -0.123 4.123 21 C 0.292 3.708 22 N -0.475 5.475 23 C 0.213 3.787 24 O -0.325 6.325 25 C 0.015 3.985 26 C -0.256 4.256 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.027 0.973 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.175 0.825 38 H 0.177 0.823 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 -8.790 17.751 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.029 4.029 3 N -0.328 5.328 4 C 0.141 3.859 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.282 3.718 14 O -0.467 6.467 15 C -0.027 4.027 16 O -0.223 6.223 17 C 0.145 3.855 18 C -0.257 4.257 19 C 0.008 3.992 20 C -0.128 4.128 21 C -0.022 4.022 22 N -0.152 5.152 23 C 0.163 3.837 24 O -0.237 6.237 25 C -0.079 4.079 26 C -0.276 4.276 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.045 0.955 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.192 0.808 38 H 0.194 0.806 39 H 0.140 0.860 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.633 -8.571 19.324 21.877 hybrid contribution 1.020 0.898 -1.370 1.929 sum -4.613 -7.673 17.955 20.063 Atomic orbital electron populations 1.22203 0.94363 1.03842 1.01896 1.21919 0.95473 0.80728 1.04773 1.48205 1.63664 1.15415 1.05551 1.18737 0.95420 0.91573 0.80178 1.21720 0.97899 1.31975 1.06418 0.92559 1.25851 1.02274 0.94528 0.96566 1.70051 1.37772 1.34218 1.14811 0.85435 0.79146 0.78123 0.78232 1.18752 1.20968 1.19697 1.20805 0.78125 0.86633 0.86228 1.90693 1.47357 1.20766 1.87876 1.22840 1.05340 0.92659 0.81891 1.86141 1.81536 1.42072 1.12572 1.19224 0.90287 0.92584 0.83403 1.21445 1.09631 0.94799 0.99841 1.21098 0.90219 0.99431 0.88502 1.15402 1.17341 0.93074 0.86946 1.25499 0.91963 0.92285 0.92433 1.81226 1.11874 1.10145 1.11984 1.18578 0.90454 0.89022 0.85653 1.86076 1.79749 1.27282 1.30588 1.23474 1.00004 0.79159 1.05290 1.20355 1.14942 1.03131 0.89139 0.91656 0.94556 0.88215 0.90617 0.87093 0.95459 0.98630 0.92460 0.85240 0.84872 0.80775 0.80563 0.85956 0.91163 0.91276 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.24 71.98 0.74 -2.40 16 2 C 0.09 2.26 5.93 86.38 0.51 2.77 16 3 N -0.60 -22.70 2.46 -826.16 -2.03 -24.73 16 4 C 0.26 13.47 5.16 85.63 0.44 13.91 16 5 C -0.54 -30.04 9.39 25.60 0.24 -29.80 16 6 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16 9 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 13 C 0.49 18.84 7.75 87.66 0.68 19.52 16 14 O -0.59 -29.97 16.08 16.01 0.26 -29.72 16 15 C 0.05 1.13 3.77 71.24 0.27 1.39 16 16 O -0.31 -8.34 9.66 -71.74 -0.69 -9.04 16 17 C 0.19 3.79 6.69 22.59 0.15 3.94 16 18 C -0.24 -2.91 9.01 22.33 0.20 -2.71 16 19 C 0.03 0.31 9.75 22.51 0.22 0.53 16 20 C -0.12 -2.11 5.76 -21.14 -0.12 -2.24 16 21 C 0.29 6.29 14.87 88.33 1.31 7.60 16 22 N -0.47 -12.48 18.54 19.00 0.35 -12.13 16 23 C 0.21 4.00 6.69 22.82 0.15 4.16 16 24 O -0.32 -6.18 9.92 -90.17 -0.89 -7.07 16 25 C 0.01 0.18 9.81 113.37 1.11 1.29 16 26 C -0.26 -5.00 8.96 22.42 0.20 -4.80 16 27 H 0.06 1.06 7.22 -2.39 -0.02 1.05 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 2.04 8.07 -2.39 -0.02 2.02 16 31 H 0.11 1.66 6.44 -2.38 -0.02 1.65 16 32 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 33 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 34 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.13 1.97 6.91 -2.39 -0.02 1.96 16 36 H 0.13 1.89 6.69 -2.39 -0.02 1.88 16 37 H 0.17 0.98 6.27 -2.91 -0.02 0.96 16 38 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 41 H 0.07 0.78 7.67 -2.38 -0.02 0.76 16 42 H 0.15 2.80 6.29 -2.91 -0.02 2.78 16 Total: -1.00 -82.64 367.32 6.93 -75.71 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: 1.05 Total: 1.98 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.57 Total: 14.01 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -1.39 Total: -91.68 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.33 Total: -45.83 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -82.64 6.93 -75.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195091577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.235 kcal (2) G-P(sol) polarization free energy of solvation -82.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds