Wall clock time and date at job start Tue Mar 31 2020 13:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47139 * 2 1 4 4 C 1.34939 * 117.00318 * 180.02562 * 3 2 1 5 5 O 1.21657 * 120.00307 * 0.02562 * 4 3 2 6 6 C 1.41710 * 120.00080 * 179.97438 * 4 3 2 7 7 C 1.35153 * 120.00199 * 173.14257 * 6 4 3 8 8 C 1.46875 * 119.99920 * 348.48637 * 7 6 4 9 9 C 1.40057 * 120.09416 * 315.86567 * 8 7 6 10 10 C 1.37084 * 119.90323 * 179.76679 * 9 8 7 11 11 C 1.39257 * 120.09359 * 0.51391 * 10 9 8 12 12 N 1.39091 * 119.90073 * 179.71710 * 11 10 9 13 13 C 1.46498 * 120.00281 * 0.02683 * 12 11 10 14 14 C 1.50705 * 109.47099 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00038 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99533 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99598 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00146 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99777 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00063 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47262 * 90.00229 * 21 19 17 23 23 H 1.48497 * 109.46773 * 210.00188 * 21 19 17 24 24 H 1.48499 * 109.47395 * 329.99907 * 21 19 17 25 25 C 1.39249 * 120.19523 * 359.74325 * 11 10 9 26 26 C 1.37091 * 120.09436 * 359.97438 * 25 11 10 27 27 H 1.09002 * 109.46806 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47209 * 299.99302 * 1 2 3 29 29 H 1.08992 * 109.47595 * 60.00541 * 1 2 3 30 30 H 1.09003 * 109.47531 * 240.00479 * 2 1 3 31 31 H 1.09001 * 109.47459 * 120.00265 * 2 1 3 32 32 H 1.07999 * 119.99706 * 353.14779 * 6 4 3 33 33 H 1.08002 * 120.00071 * 168.47731 * 7 6 4 34 34 H 1.08002 * 120.04698 * 0.02562 * 9 8 7 35 35 H 1.07994 * 119.95244 * 180.23674 * 10 9 8 36 36 H 0.97009 * 119.99944 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.47020 * 299.99641 * 13 12 11 38 38 H 1.09001 * 109.47005 * 59.99661 * 13 12 11 39 39 H 0.96995 * 120.00516 * 359.97438 * 16 14 13 40 40 H 0.96998 * 119.99743 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.95800 * 179.97438 * 25 11 10 42 42 H 1.08007 * 120.04898 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3440 1.5241 -0.0005 5 8 4.0852 0.5594 -0.0015 6 6 3.8856 2.8337 -0.0011 7 6 5.2178 3.0141 0.1381 8 6 6.0730 1.8899 0.5405 9 6 5.6720 1.0387 1.5779 10 6 6.4710 -0.0123 1.9472 11 6 7.6849 -0.2277 1.2995 12 7 8.4952 -1.2918 1.6814 13 6 8.0710 -2.1842 2.7630 14 6 9.1187 -3.2460 2.9781 15 8 10.1208 -3.2565 2.2949 16 7 8.9420 -4.1838 3.9298 17 6 9.8948 -5.1500 4.1252 18 1 10.7871 -5.1594 3.5168 19 6 9.7129 -6.1167 5.1067 20 7 8.6275 -6.1050 5.8473 21 14 11.0115 -7.4327 5.3734 22 1 11.9995 -6.9575 6.3750 23 1 10.3637 -8.6742 5.8676 24 1 11.7035 -7.7128 4.0897 25 6 8.0900 0.6193 0.2712 26 6 7.2944 1.6692 -0.1083 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.2338 3.6875 -0.1127 33 1 5.6535 3.9849 -0.0467 34 1 4.7327 1.2075 2.0835 35 1 6.1608 -0.6714 2.7444 36 1 9.3412 -1.4430 1.2315 37 1 7.9429 -1.6086 3.6798 38 1 7.1257 -2.6560 2.4950 39 1 8.1408 -4.1752 4.4765 40 1 8.5004 -6.7800 6.5322 41 1 9.0324 0.4489 -0.2282 42 1 7.6092 2.3255 -0.9063 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255313905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:42 Heat of formation + Delta-G solvation = -69.355083 kcal Electronic energy + Delta-G solvation = -25175.558928 eV Core-core repulsion = 21314.372741 eV Total energy + Delta-G solvation = -3861.186188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.78748 -39.36425 -38.33694 -37.03004 -35.31674 -34.09038 -33.19359 -31.83346 -31.41012 -30.84119 -29.21061 -26.85876 -24.95718 -24.28105 -22.96934 -22.31107 -21.32382 -19.66467 -19.43234 -18.14795 -17.98979 -17.46037 -16.65773 -16.47455 -15.68614 -15.44950 -14.82692 -14.74756 -14.64611 -14.32908 -14.20383 -13.91999 -13.67158 -13.41448 -13.20157 -13.05111 -12.94106 -12.84086 -12.21675 -12.17238 -12.00174 -11.78796 -11.64943 -11.45200 -11.15646 -10.87132 -10.61841 -10.55595 -10.47754 -10.33533 -10.05505 -9.65980 -9.22179 -8.65263 -8.64599 -8.12954 -6.98422 -6.54217 -3.96051 0.55534 1.72914 2.00924 2.80729 3.01971 3.09945 3.20353 3.25643 3.65006 3.70948 4.09848 4.11473 4.71335 4.72678 4.73611 4.83917 4.85286 5.02774 5.09496 5.10631 5.13926 5.20478 5.44121 5.52909 5.54979 5.65105 5.70113 5.72500 5.86816 5.87488 5.91713 6.03410 6.09500 6.19085 6.44401 6.54338 6.61110 6.77236 7.01388 7.43718 7.54390 7.83228 7.90552 8.06529 8.42909 9.02445 9.36366 9.84671 10.62806 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.002403 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.168462 B =11649.477116 C =13028.954170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.360 6.360 4 C 0.490 3.510 5 O -0.490 6.490 6 C -0.240 4.240 7 C 0.040 3.960 8 C -0.175 4.175 9 C 0.013 3.987 10 C -0.214 4.214 11 C 0.253 3.747 12 N -0.716 5.716 13 C 0.110 3.890 14 C 0.429 3.571 15 O -0.595 6.595 16 N -0.550 5.550 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.896 5.896 21 Si 0.933 3.067 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.269 1.269 25 C -0.218 4.218 26 C -0.035 4.035 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.412 0.588 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.395 0.605 40 H 0.274 0.726 41 H 0.120 0.880 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.870 17.533 -9.196 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.337 3.663 5 O -0.379 6.379 6 C -0.260 4.260 7 C 0.021 3.979 8 C -0.177 4.177 9 C -0.006 4.006 10 C -0.237 4.237 11 C 0.144 3.856 12 N -0.344 5.344 13 C -0.019 4.019 14 C 0.215 3.785 15 O -0.481 6.481 16 N -0.185 5.185 17 C -0.434 4.434 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.536 5.536 21 Si 0.760 3.240 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.241 4.241 26 C -0.054 4.054 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.250 0.750 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.229 0.771 40 H 0.084 0.916 41 H 0.138 0.862 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.112 16.871 -9.302 23.304 hybrid contribution 0.245 -0.968 0.390 1.071 sum -12.867 15.903 -8.913 22.314 Atomic orbital electron populations 1.21799 0.92890 1.02887 1.03241 1.22561 0.95134 0.81081 1.02512 1.86196 1.25034 1.31879 1.84698 1.20157 0.80367 0.91378 0.74381 1.91036 1.58872 1.43157 1.44859 1.21203 0.96046 0.94835 1.13869 1.22548 0.92100 0.97767 0.85468 1.18504 0.96814 0.99962 1.02432 1.20554 0.95506 0.91272 0.93298 1.20373 0.95780 1.02229 1.05331 1.18033 0.89770 0.86384 0.91385 1.44527 1.23379 1.28128 1.38372 1.20996 0.97820 0.92030 0.91013 1.19726 0.88810 0.85201 0.84802 1.90504 1.31126 1.76496 1.49984 1.41797 1.21219 1.24709 1.30810 1.19731 1.01349 1.04866 1.17465 0.87717 1.25320 0.97691 0.98879 0.95819 1.69607 1.26231 1.36056 1.21717 0.85810 0.79910 0.79408 0.78907 1.20235 1.20762 1.19309 1.20266 1.02555 0.99327 1.01938 1.20662 0.91830 0.95938 0.96973 0.90393 0.91609 0.91693 0.91656 0.91509 0.84449 0.84506 0.87550 0.86133 0.74960 0.90460 0.90477 0.77120 0.91589 0.86206 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.60 6.10 37.16 0.23 0.82 16 3 O -0.36 -4.02 10.10 -41.15 -0.42 -4.43 16 4 C 0.49 5.93 6.76 32.06 0.22 6.15 16 5 O -0.49 -7.35 11.85 -19.39 -0.23 -7.58 16 6 C -0.24 -2.24 9.84 -39.35 -0.39 -2.63 16 7 C 0.04 0.36 9.79 -37.19 -0.36 0.00 16 8 C -0.17 -2.16 4.46 -105.04 -0.47 -2.63 16 9 C 0.01 0.18 6.63 -39.32 -0.26 -0.08 16 10 C -0.21 -3.22 9.26 -39.62 -0.37 -3.59 16 11 C 0.25 3.97 6.65 -83.81 -0.56 3.42 16 12 N -0.72 -12.34 5.68 -59.78 -0.34 -12.68 16 13 C 0.11 1.97 5.38 -5.19 -0.03 1.94 16 14 C 0.43 9.93 7.85 -10.98 -0.09 9.85 16 15 O -0.59 -15.67 15.24 5.55 0.08 -15.59 16 16 N -0.55 -13.65 5.29 -10.96 -0.06 -13.71 16 17 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 18 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 20 N -0.90 -23.84 13.05 55.50 0.72 -23.12 16 21 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 C -0.22 -3.06 9.85 -39.62 -0.39 -3.45 16 26 C -0.04 -0.43 9.76 -39.32 -0.38 -0.82 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.11 1.37 7.08 -52.49 -0.37 1.00 16 35 H 0.12 1.73 6.69 -52.49 -0.35 1.38 16 36 H 0.41 7.45 7.44 -40.82 -0.30 7.15 16 37 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 38 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 39 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -31.98 363.25 -7.98 -39.96 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -5.49 Total: 15.65 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.71 Total: 0.42 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.33 Total: -49.51 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.56 Total: -27.60 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.98 -7.98 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255313905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.393 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds