Wall clock time and date at job start Tue Mar 31 2020 13:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47139 * 2 1 4 4 C 1.34939 * 117.00318 * 180.02562 * 3 2 1 5 5 O 1.21657 * 120.00307 * 0.02562 * 4 3 2 6 6 C 1.41710 * 120.00080 * 179.97438 * 4 3 2 7 7 C 1.35153 * 120.00199 * 173.14257 * 6 4 3 8 8 C 1.46875 * 119.99920 * 348.48637 * 7 6 4 9 9 C 1.40057 * 120.09416 * 315.86567 * 8 7 6 10 10 C 1.37084 * 119.90323 * 179.76679 * 9 8 7 11 11 C 1.39257 * 120.09359 * 0.51391 * 10 9 8 12 12 N 1.39091 * 119.90073 * 179.71710 * 11 10 9 13 13 C 1.46498 * 120.00281 * 0.02683 * 12 11 10 14 14 C 1.50705 * 109.47099 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00038 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99533 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99598 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00146 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99777 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00063 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47262 * 90.00229 * 21 19 17 23 23 H 1.48497 * 109.46773 * 210.00188 * 21 19 17 24 24 H 1.48499 * 109.47395 * 329.99907 * 21 19 17 25 25 C 1.39249 * 120.19523 * 359.74325 * 11 10 9 26 26 C 1.37091 * 120.09436 * 359.97438 * 25 11 10 27 27 H 1.09002 * 109.46806 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47209 * 299.99302 * 1 2 3 29 29 H 1.08992 * 109.47595 * 60.00541 * 1 2 3 30 30 H 1.09003 * 109.47531 * 240.00479 * 2 1 3 31 31 H 1.09001 * 109.47459 * 120.00265 * 2 1 3 32 32 H 1.07999 * 119.99706 * 353.14779 * 6 4 3 33 33 H 1.08002 * 120.00071 * 168.47731 * 7 6 4 34 34 H 1.08002 * 120.04698 * 0.02562 * 9 8 7 35 35 H 1.07994 * 119.95244 * 180.23674 * 10 9 8 36 36 H 0.97009 * 119.99944 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.47020 * 299.99641 * 13 12 11 38 38 H 1.09001 * 109.47005 * 59.99661 * 13 12 11 39 39 H 0.96995 * 120.00516 * 359.97438 * 16 14 13 40 40 H 0.96998 * 119.99743 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.95800 * 179.97438 * 25 11 10 42 42 H 1.08007 * 120.04898 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3440 1.5241 -0.0005 5 8 4.0852 0.5594 -0.0015 6 6 3.8856 2.8337 -0.0011 7 6 5.2178 3.0141 0.1381 8 6 6.0730 1.8899 0.5405 9 6 5.6720 1.0387 1.5779 10 6 6.4710 -0.0123 1.9472 11 6 7.6849 -0.2277 1.2995 12 7 8.4952 -1.2918 1.6814 13 6 8.0710 -2.1842 2.7630 14 6 9.1187 -3.2460 2.9781 15 8 10.1208 -3.2565 2.2949 16 7 8.9420 -4.1838 3.9298 17 6 9.8948 -5.1500 4.1252 18 1 10.7871 -5.1594 3.5168 19 6 9.7129 -6.1167 5.1067 20 7 8.6275 -6.1050 5.8473 21 14 11.0115 -7.4327 5.3734 22 1 11.9995 -6.9575 6.3750 23 1 10.3637 -8.6742 5.8676 24 1 11.7035 -7.7128 4.0897 25 6 8.0900 0.6193 0.2712 26 6 7.2944 1.6692 -0.1083 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.2338 3.6875 -0.1127 33 1 5.6535 3.9849 -0.0467 34 1 4.7327 1.2075 2.0835 35 1 6.1608 -0.6714 2.7444 36 1 9.3412 -1.4430 1.2315 37 1 7.9429 -1.6086 3.6798 38 1 7.1257 -2.6560 2.4950 39 1 8.1408 -4.1752 4.4765 40 1 8.5004 -6.7800 6.5322 41 1 9.0324 0.4489 -0.2282 42 1 7.6092 2.3255 -0.9063 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255313905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:41 Heat of formation + Delta-G solvation = -89.343644 kcal Electronic energy + Delta-G solvation = -25176.425697 eV Core-core repulsion = 21314.372741 eV Total energy + Delta-G solvation = -3862.052957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70649 -40.67348 -39.90962 -38.01293 -36.58993 -35.94133 -34.19266 -33.41004 -32.54323 -31.89075 -30.41783 -28.25315 -26.43519 -25.48505 -23.89031 -23.28654 -22.39226 -21.19181 -20.52725 -20.05838 -19.02804 -18.69256 -17.59641 -17.48679 -17.14959 -16.94584 -16.41745 -16.32975 -15.77360 -15.63016 -15.27098 -14.97057 -14.73180 -14.66374 -14.41306 -14.18721 -13.92323 -13.85032 -13.55643 -13.50814 -13.34173 -12.95225 -12.82454 -12.54976 -12.49772 -12.36393 -12.15366 -11.90125 -11.65280 -11.59420 -11.40060 -10.98332 -10.59237 -10.20646 -10.12789 -9.70655 -8.54941 -8.12479 -6.05161 -0.28353 0.67990 0.98825 1.33353 1.39714 1.52361 1.87337 2.02290 2.17074 2.17858 2.41070 3.05008 3.11994 3.12489 3.91344 3.94381 4.02375 4.05922 4.10347 4.15014 4.18722 4.34138 4.37764 4.41069 4.50635 4.57430 4.65840 4.84111 4.88640 4.93435 5.08943 5.15092 5.16417 5.25377 5.33980 5.47762 5.57113 5.62700 5.79062 5.84292 5.98120 6.35411 6.46922 6.74873 6.93515 7.00286 7.40157 7.91898 8.62045 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.002403 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.168462 B =11649.477116 C =13028.954170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 O -0.361 6.361 4 C 0.482 3.518 5 O -0.527 6.527 6 C -0.238 4.238 7 C 0.045 3.955 8 C -0.170 4.170 9 C 0.002 3.998 10 C -0.228 4.228 11 C 0.226 3.774 12 N -0.729 5.729 13 C 0.127 3.873 14 C 0.430 3.570 15 O -0.629 6.629 16 N -0.559 5.559 17 C -0.339 4.339 18 H 0.082 0.918 19 C -0.009 4.009 20 N -0.915 5.915 21 Si 0.996 3.004 22 H -0.269 1.269 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.225 4.225 26 C -0.038 4.038 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.171 0.829 33 H 0.183 0.817 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.405 0.595 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.400 0.600 40 H 0.281 0.719 41 H 0.127 0.873 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.085 19.472 -9.749 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.332 3.668 5 O -0.419 6.419 6 C -0.256 4.256 7 C 0.027 3.973 8 C -0.173 4.173 9 C -0.017 4.017 10 C -0.251 4.251 11 C 0.120 3.880 12 N -0.358 5.358 13 C -0.001 4.001 14 C 0.217 3.783 15 O -0.517 6.517 16 N -0.195 5.195 17 C -0.469 4.469 18 H 0.100 0.900 19 C -0.210 4.210 20 N -0.555 5.555 21 Si 0.819 3.181 22 H -0.194 1.194 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.248 4.248 26 C -0.056 4.056 27 H 0.111 0.889 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.188 0.812 33 H 0.200 0.800 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.242 0.758 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.234 0.766 40 H 0.090 0.910 41 H 0.145 0.855 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.390 18.856 -9.853 25.685 hybrid contribution 0.493 -1.452 0.479 1.607 sum -13.897 17.404 -9.374 24.164 Atomic orbital electron populations 1.21798 0.90507 1.04053 1.03752 1.22720 0.97028 0.80497 1.01660 1.86209 1.24727 1.32536 1.84342 1.20822 0.80419 0.92189 0.73397 1.91031 1.59592 1.44546 1.46770 1.21520 0.96554 0.94324 1.13247 1.22894 0.91499 0.98318 0.84637 1.18939 0.97072 1.00125 1.01142 1.20700 0.95452 0.91417 0.94125 1.20485 0.95991 1.02967 1.05626 1.18215 0.90172 0.86778 0.92791 1.44422 1.23609 1.29019 1.38741 1.20812 0.96022 0.90843 0.92405 1.20575 0.89151 0.85278 0.83289 1.90471 1.32950 1.77390 1.50905 1.41839 1.21119 1.24978 1.31553 1.19708 1.01761 1.06802 1.18593 0.89961 1.26114 0.99638 1.00284 0.94963 1.69665 1.27248 1.36740 1.21832 0.84882 0.77527 0.77057 0.78609 1.19414 1.19380 1.19695 1.20526 1.03250 0.99548 1.01489 1.21050 0.91446 0.95676 0.97458 0.88939 0.91164 0.91038 0.92464 0.92506 0.81164 0.80021 0.87220 0.86370 0.75805 0.88659 0.89305 0.76613 0.90977 0.85520 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 10.28 71.98 0.74 -1.02 16 2 C 0.06 1.05 6.10 71.98 0.44 1.49 16 3 O -0.36 -7.59 10.10 -58.55 -0.59 -8.18 16 4 C 0.48 10.97 6.76 68.68 0.46 11.43 16 5 O -0.53 -15.59 11.85 19.32 0.23 -15.36 16 6 C -0.24 -3.64 9.84 22.42 0.22 -3.42 16 7 C 0.04 0.64 9.79 23.82 0.23 0.87 16 8 C -0.17 -3.85 4.46 -20.14 -0.09 -3.94 16 9 C 0.00 0.05 6.63 22.44 0.15 0.20 16 10 C -0.23 -6.92 9.26 22.24 0.21 -6.71 16 11 C 0.23 7.18 6.65 38.48 0.26 7.44 16 12 N -0.73 -25.80 5.68 -343.04 -1.95 -27.75 16 13 C 0.13 4.67 5.38 85.63 0.46 5.13 16 14 C 0.43 20.56 7.85 87.66 0.69 21.25 16 15 O -0.63 -34.44 15.24 -3.06 -0.05 -34.48 16 16 N -0.56 -28.61 5.29 -306.98 -1.62 -30.23 16 17 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 18 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 19 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 20 N -0.91 -48.77 13.05 21.66 0.28 -48.48 16 21 Si 1.00 42.32 29.55 68.60 2.03 44.34 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 C -0.23 -6.19 9.85 22.24 0.22 -5.97 16 26 C -0.04 -0.84 9.76 22.44 0.22 -0.63 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 1.15 8.13 -2.39 -0.02 1.14 16 31 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 32 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.11 2.78 7.08 -2.91 -0.02 2.76 16 35 H 0.12 3.48 6.69 -2.91 -0.02 3.46 16 36 H 0.40 15.26 7.44 -92.70 -0.69 14.57 16 37 H 0.10 3.13 7.93 -2.38 -0.02 3.11 16 38 H 0.09 3.03 7.93 -2.39 -0.02 3.01 16 39 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 40 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 42 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -71.01 363.25 3.45 -67.56 By element: Atomic # 1 Polarization: 45.14 SS G_CDS: -0.36 Total: 44.78 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 5.49 Total: 7.82 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -3.29 Total: -106.47 kcal Atomic # 8 Polarization: -57.62 SS G_CDS: -0.41 Total: -58.03 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -71.01 3.45 -67.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255313905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.784 kcal (2) G-P(sol) polarization free energy of solvation -71.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds