Wall clock time and date at job start Tue Mar 31 2020 12:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.88792 * 2 1 4 4 C 1.55157 * 111.04020 * 123.90623 * 2 1 3 5 5 C 1.54331 * 103.02529 * 153.39233 * 4 2 1 6 6 N 1.47023 * 107.26183 * 338.14098 * 5 4 2 7 7 C 1.34782 * 125.64454 * 178.84838 * 6 5 4 8 8 O 1.21356 * 119.99584 * 179.69713 * 7 6 5 9 9 C 1.49355 * 120.00199 * 359.69143 * 7 6 5 10 10 O 1.21384 * 119.99759 * 359.97438 * 9 7 6 11 11 N 1.34769 * 120.00129 * 180.02562 * 9 7 6 12 12 C 1.39727 * 119.99948 * 184.50561 * 11 9 7 13 13 C 1.39025 * 120.04083 * 144.86792 * 12 11 9 14 14 C 1.38137 * 120.05978 * 180.02562 * 13 12 11 15 15 C 1.38177 * 120.14688 * 359.97438 * 14 13 12 16 16 C 1.38922 * 120.08365 * 0.02562 * 15 14 13 17 17 O 1.35748 * 120.03413 * 179.97438 * 16 15 14 18 18 C 1.34834 * 116.99718 * 5.36683 * 17 16 15 19 19 H 1.07995 * 120.00306 * 354.96434 * 18 17 16 20 20 C 1.38658 * 119.99332 * 174.96271 * 18 17 16 21 21 N 1.31561 * 119.99217 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00469 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47215 * 89.99628 * 22 20 18 24 24 H 1.48502 * 109.47055 * 209.99759 * 22 20 18 25 25 H 1.48499 * 109.47308 * 329.99650 * 22 20 18 26 26 C 1.38759 * 119.93670 * 359.97438 * 16 15 14 27 27 C 1.47424 * 108.70507 * 358.58534 * 6 5 4 28 28 H 1.09000 * 109.47429 * 182.42693 * 1 2 3 29 29 H 1.09003 * 109.46878 * 302.43000 * 1 2 3 30 30 H 1.08999 * 109.47361 * 62.42600 * 1 2 3 31 31 H 1.08998 * 110.71792 * 271.95609 * 4 2 1 32 32 H 1.09004 * 110.71606 * 35.22288 * 4 2 1 33 33 H 1.08997 * 109.99397 * 218.66788 * 5 4 2 34 34 H 1.09001 * 109.77398 * 97.49357 * 5 4 2 35 35 H 0.97005 * 120.00093 * 4.50683 * 11 9 7 36 36 H 1.07995 * 119.96844 * 359.97438 * 13 12 11 37 37 H 1.08006 * 119.92636 * 179.71941 * 14 13 12 38 38 H 1.08000 * 119.96430 * 179.97438 * 15 14 13 39 39 H 0.97000 * 119.99376 * 180.02562 * 21 20 18 40 40 H 1.08005 * 120.07474 * 180.02562 * 26 16 15 41 41 H 1.08997 * 110.36338 * 143.19664 * 27 6 5 42 42 H 1.09003 * 110.36523 * 265.40671 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0870 -0.8078 1.2019 5 6 3.4666 -1.2786 0.6951 6 7 3.4274 -1.2421 -0.7742 7 6 4.4478 -1.5600 -1.5953 8 8 4.3003 -1.4985 -2.7983 9 6 5.7601 -1.9879 -1.0247 10 8 5.9077 -2.0488 0.1786 11 7 6.7806 -2.3053 -1.8458 12 6 7.9770 -2.7954 -1.3160 13 6 8.7047 -3.7546 -2.0110 14 6 9.8873 -4.2398 -1.4874 15 6 10.3511 -3.7734 -0.2722 16 6 9.6288 -2.8149 0.4275 17 8 10.0852 -2.3578 1.6215 18 6 11.2985 -2.7909 2.0194 19 1 11.8249 -3.5325 1.4370 20 6 11.8703 -2.2838 3.1763 21 7 13.0544 -2.7059 3.5643 22 14 10.9596 -1.0014 4.1839 23 1 10.1110 -1.6789 5.1969 24 1 11.9406 -0.1216 4.8685 25 1 10.1030 -0.1842 3.2874 26 6 8.4405 -2.3252 -0.0953 27 6 2.0852 -0.8062 -1.2006 28 1 -0.3634 -1.0267 0.0435 29 1 -0.3633 0.5511 0.8674 30 1 -0.3634 0.4757 -0.9109 31 1 2.1930 -0.1699 2.0793 32 1 1.4481 -1.6634 1.4207 33 1 3.6616 -2.2955 1.0355 34 1 4.2430 -0.6072 1.0620 35 1 6.6845 -2.1935 -2.8045 36 1 8.3446 -4.1214 -2.9608 37 1 10.4486 -4.9883 -2.0270 38 1 11.2759 -4.1551 0.1347 39 1 13.4543 -2.3514 4.3738 40 1 7.8773 -1.5797 0.4466 41 1 2.1553 -0.1715 -2.0839 42 1 1.4527 -1.6703 -1.4045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263711763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:37 Heat of formation + Delta-G solvation = -56.951071 kcal Electronic energy + Delta-G solvation = -25993.263229 eV Core-core repulsion = 22132.614920 eV Total energy + Delta-G solvation = -3860.648309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08665 -39.69327 -38.69962 -37.88065 -36.76372 -34.39423 -33.19471 -32.39032 -30.00427 -29.83591 -28.90128 -27.45675 -25.32083 -24.68323 -23.07656 -22.04439 -21.09328 -20.74423 -19.87576 -18.32118 -17.95350 -17.32392 -16.97187 -16.67980 -15.71588 -15.56292 -15.26225 -14.90321 -14.68740 -14.15630 -14.08687 -13.85783 -13.82678 -13.57096 -13.37162 -13.03954 -12.88792 -12.84674 -12.45933 -12.31344 -12.19249 -11.79481 -11.71924 -11.39080 -11.17246 -11.11290 -11.03135 -11.01044 -10.82660 -10.24877 -9.92955 -9.63614 -9.27937 -9.04591 -8.88179 -7.91128 -7.37072 -6.42509 -4.09204 1.18893 1.96825 2.17171 2.22366 3.13996 3.23728 3.26576 3.33305 3.42594 4.00684 4.21566 4.24410 4.29328 4.40436 4.46799 4.86729 4.92100 4.93412 5.02305 5.10392 5.17435 5.27748 5.37817 5.50301 5.52109 5.59722 5.67002 5.68547 5.71606 5.81256 5.93316 5.98497 6.04555 6.19106 6.37129 6.61547 6.84253 6.94074 7.05920 7.26702 7.27536 7.49273 7.62856 7.78280 7.95875 8.03530 8.92683 9.54957 10.64827 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.003245 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.960520 B = 8626.964239 C =10330.829094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.131 4.131 5 C 0.103 3.897 6 N -0.592 5.592 7 C 0.526 3.474 8 O -0.524 6.524 9 C 0.502 3.498 10 O -0.488 6.488 11 N -0.637 5.637 12 C 0.167 3.833 13 C -0.220 4.220 14 C -0.059 4.059 15 C -0.228 4.228 16 C 0.172 3.828 17 O -0.212 6.212 18 C -0.389 4.389 19 H 0.108 0.892 20 C 0.064 3.936 21 N -0.878 5.878 22 Si 0.904 3.096 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.185 4.185 27 C 0.108 3.892 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.418 0.582 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.136 0.864 39 H 0.280 0.720 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.203 3.733 -8.442 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.106 0.894 4 C -0.169 4.169 5 C -0.020 4.020 6 N -0.326 5.326 7 C 0.309 3.691 8 O -0.401 6.401 9 C 0.283 3.717 10 O -0.361 6.361 11 N -0.283 5.283 12 C 0.074 3.926 13 C -0.241 4.241 14 C -0.078 4.078 15 C -0.248 4.248 16 C 0.119 3.881 17 O -0.117 6.117 18 C -0.465 4.465 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.516 5.516 22 Si 0.730 3.270 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.206 4.206 27 C -0.014 4.014 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.255 0.745 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.152 0.848 41 H 0.101 0.899 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.065 3.878 -7.918 23.761 hybrid contribution -0.131 0.392 0.023 0.414 sum -22.195 4.270 -7.895 23.941 Atomic orbital electron populations 1.21691 0.93380 1.02390 1.02345 1.22389 0.96429 0.99568 0.94261 0.89442 1.22833 0.95555 1.00383 0.98172 1.22281 0.98072 1.03409 0.78195 1.48234 1.11700 1.64469 1.08179 1.19770 0.84480 0.78855 0.86039 1.90758 1.82857 1.52478 1.13962 1.20004 0.84966 0.79608 0.87105 1.90825 1.82305 1.49031 1.13981 1.42988 1.11690 1.62445 1.11208 1.17155 0.85266 0.95483 0.94705 1.20386 0.99134 1.02133 1.02480 1.20578 0.94605 0.97816 0.94790 1.21343 1.03572 1.02525 0.97328 1.18832 0.92012 0.91886 0.85341 1.83582 1.34836 1.63528 1.29751 1.20791 0.91533 1.24179 1.09961 0.87476 1.24463 0.95180 0.97780 0.96489 1.69649 1.14677 1.42858 1.24406 0.86187 0.79481 0.81169 0.80167 1.19794 1.20804 1.18282 1.20146 0.97371 1.05634 0.97442 1.22447 0.82010 0.98731 0.98182 0.92183 0.91867 0.92160 0.89549 0.90306 0.89992 0.89881 0.74454 0.86850 0.86494 0.84670 0.91019 0.84817 0.89938 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.30 37.16 0.35 -0.31 16 2 C -0.11 -0.69 3.64 -88.47 -0.32 -1.01 16 3 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -0.90 6.42 -24.89 -0.16 -1.06 16 5 C 0.10 1.05 5.49 -3.06 -0.02 1.04 16 6 N -0.59 -6.75 3.33 -171.06 -0.57 -7.31 16 7 C 0.53 7.25 7.91 -11.63 -0.09 7.16 16 8 O -0.52 -7.87 16.74 5.49 0.09 -7.78 16 9 C 0.50 7.77 7.69 -11.63 -0.09 7.68 16 10 O -0.49 -8.65 11.56 5.47 0.06 -8.59 16 11 N -0.64 -9.58 5.32 -10.31 -0.05 -9.63 16 12 C 0.17 2.98 6.29 -83.77 -0.53 2.46 16 13 C -0.22 -3.64 9.97 -39.33 -0.39 -4.03 16 14 C -0.06 -1.04 10.03 -39.64 -0.40 -1.44 16 15 C -0.23 -4.88 9.17 -39.35 -0.36 -5.24 16 16 C 0.17 4.06 6.64 -39.14 -0.26 3.80 16 17 O -0.21 -5.70 8.58 0.04 0.00 -5.70 16 18 C -0.39 -10.98 9.95 30.89 0.31 -10.68 16 19 H 0.11 3.06 5.43 -52.49 -0.29 2.77 16 20 C 0.06 1.81 5.49 -17.51 -0.10 1.71 16 21 N -0.88 -25.33 13.96 55.48 0.77 -24.56 16 22 Si 0.90 21.90 28.62 -169.99 -4.86 17.04 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.18 -3.92 8.64 -39.19 -0.34 -4.26 16 27 C 0.11 0.92 6.37 -2.53 -0.02 0.90 16 28 H 0.06 0.27 8.11 -51.93 -0.42 -0.16 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.48 8.02 -51.93 -0.42 0.06 16 33 H 0.08 0.92 7.71 -51.93 -0.40 0.52 16 34 H 0.08 0.95 7.57 -51.93 -0.39 0.56 16 35 H 0.42 5.22 8.30 -40.82 -0.34 4.89 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 38 H 0.14 3.00 5.63 -52.49 -0.30 2.71 16 39 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.13 2.93 6.23 -52.48 -0.33 2.60 16 41 H 0.08 0.72 8.04 -51.93 -0.42 0.31 16 42 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -31.81 352.47 -7.04 -38.86 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.38 Total: 5.62 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.42 Total: -3.26 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.15 Total: -41.50 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.16 Total: -22.06 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.81 -7.04 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263711763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.092 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds