Wall clock time and date at job start Tue Mar 31 2020 12:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.88792 * 2 1 4 4 C 1.55157 * 111.04020 * 123.90623 * 2 1 3 5 5 C 1.54331 * 103.02529 * 153.39233 * 4 2 1 6 6 N 1.47023 * 107.26183 * 338.14098 * 5 4 2 7 7 C 1.34782 * 125.64454 * 178.84838 * 6 5 4 8 8 O 1.21356 * 119.99584 * 179.69713 * 7 6 5 9 9 C 1.49355 * 120.00199 * 359.69143 * 7 6 5 10 10 O 1.21384 * 119.99759 * 359.97438 * 9 7 6 11 11 N 1.34769 * 120.00129 * 180.02562 * 9 7 6 12 12 C 1.39727 * 119.99948 * 184.50561 * 11 9 7 13 13 C 1.39025 * 120.04083 * 144.86792 * 12 11 9 14 14 C 1.38137 * 120.05978 * 180.02562 * 13 12 11 15 15 C 1.38177 * 120.14688 * 359.97438 * 14 13 12 16 16 C 1.38922 * 120.08365 * 0.02562 * 15 14 13 17 17 O 1.35748 * 120.03413 * 179.97438 * 16 15 14 18 18 C 1.34834 * 116.99718 * 5.36683 * 17 16 15 19 19 H 1.07995 * 120.00306 * 354.96434 * 18 17 16 20 20 C 1.38658 * 119.99332 * 174.96271 * 18 17 16 21 21 N 1.31561 * 119.99217 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00469 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47215 * 89.99628 * 22 20 18 24 24 H 1.48502 * 109.47055 * 209.99759 * 22 20 18 25 25 H 1.48499 * 109.47308 * 329.99650 * 22 20 18 26 26 C 1.38759 * 119.93670 * 359.97438 * 16 15 14 27 27 C 1.47424 * 108.70507 * 358.58534 * 6 5 4 28 28 H 1.09000 * 109.47429 * 182.42693 * 1 2 3 29 29 H 1.09003 * 109.46878 * 302.43000 * 1 2 3 30 30 H 1.08999 * 109.47361 * 62.42600 * 1 2 3 31 31 H 1.08998 * 110.71792 * 271.95609 * 4 2 1 32 32 H 1.09004 * 110.71606 * 35.22288 * 4 2 1 33 33 H 1.08997 * 109.99397 * 218.66788 * 5 4 2 34 34 H 1.09001 * 109.77398 * 97.49357 * 5 4 2 35 35 H 0.97005 * 120.00093 * 4.50683 * 11 9 7 36 36 H 1.07995 * 119.96844 * 359.97438 * 13 12 11 37 37 H 1.08006 * 119.92636 * 179.71941 * 14 13 12 38 38 H 1.08000 * 119.96430 * 179.97438 * 15 14 13 39 39 H 0.97000 * 119.99376 * 180.02562 * 21 20 18 40 40 H 1.08005 * 120.07474 * 180.02562 * 26 16 15 41 41 H 1.08997 * 110.36338 * 143.19664 * 27 6 5 42 42 H 1.09003 * 110.36523 * 265.40671 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0870 -0.8078 1.2019 5 6 3.4666 -1.2786 0.6951 6 7 3.4274 -1.2421 -0.7742 7 6 4.4478 -1.5600 -1.5953 8 8 4.3003 -1.4985 -2.7983 9 6 5.7601 -1.9879 -1.0247 10 8 5.9077 -2.0488 0.1786 11 7 6.7806 -2.3053 -1.8458 12 6 7.9770 -2.7954 -1.3160 13 6 8.7047 -3.7546 -2.0110 14 6 9.8873 -4.2398 -1.4874 15 6 10.3511 -3.7734 -0.2722 16 6 9.6288 -2.8149 0.4275 17 8 10.0852 -2.3578 1.6215 18 6 11.2985 -2.7909 2.0194 19 1 11.8249 -3.5325 1.4370 20 6 11.8703 -2.2838 3.1763 21 7 13.0544 -2.7059 3.5643 22 14 10.9596 -1.0014 4.1839 23 1 10.1110 -1.6789 5.1969 24 1 11.9406 -0.1216 4.8685 25 1 10.1030 -0.1842 3.2874 26 6 8.4405 -2.3252 -0.0953 27 6 2.0852 -0.8062 -1.2006 28 1 -0.3634 -1.0267 0.0435 29 1 -0.3633 0.5511 0.8674 30 1 -0.3634 0.4757 -0.9109 31 1 2.1930 -0.1699 2.0793 32 1 1.4481 -1.6634 1.4207 33 1 3.6616 -2.2955 1.0355 34 1 4.2430 -0.6072 1.0620 35 1 6.6845 -2.1935 -2.8045 36 1 8.3446 -4.1214 -2.9608 37 1 10.4486 -4.9883 -2.0270 38 1 11.2759 -4.1551 0.1347 39 1 13.4543 -2.3514 4.3738 40 1 7.8773 -1.5797 0.4466 41 1 2.1553 -0.1715 -2.0839 42 1 1.4527 -1.6703 -1.4045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263711763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:36 Heat of formation + Delta-G solvation = -78.035096 kcal Electronic energy + Delta-G solvation = -25994.177501 eV Core-core repulsion = 22132.614920 eV Total energy + Delta-G solvation = -3861.562581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27675 -41.03856 -40.13629 -38.85779 -38.36394 -35.77997 -34.45516 -33.97680 -31.44822 -30.70257 -30.44232 -28.26990 -27.26259 -25.76704 -24.13190 -23.43608 -22.60714 -21.38670 -21.05149 -19.97013 -19.51624 -18.75460 -18.13351 -17.64327 -17.05838 -16.95476 -16.75629 -16.30117 -15.97759 -15.69646 -15.68415 -15.16766 -14.80715 -14.55430 -14.37360 -14.29002 -14.22771 -14.18516 -13.66482 -13.46537 -13.34884 -13.12505 -12.77466 -12.72182 -12.69534 -12.50750 -12.04155 -12.02431 -11.66050 -11.59479 -11.52687 -11.33013 -10.89824 -10.69449 -9.97417 -9.49511 -9.02475 -8.51514 -6.23934 -0.08172 0.53907 0.61235 1.05555 1.29133 1.33309 1.49604 1.94082 2.24193 2.26950 2.72890 2.89342 3.09724 3.23039 3.52100 3.57077 3.87649 4.05869 4.22380 4.29566 4.32571 4.33123 4.50935 4.55004 4.56442 4.63545 4.72903 4.78695 4.80871 4.90738 4.94460 5.07543 5.14514 5.23520 5.28501 5.29123 5.33612 5.44806 5.63406 5.73117 5.85146 5.87865 6.05923 6.15391 6.50287 6.76092 6.83072 7.57168 8.59747 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.003245 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.960520 B = 8626.964239 C =10330.829094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 H 0.087 0.913 4 C -0.123 4.123 5 C 0.098 3.902 6 N -0.587 5.587 7 C 0.528 3.472 8 O -0.538 6.538 9 C 0.500 3.500 10 O -0.514 6.514 11 N -0.628 5.628 12 C 0.173 3.827 13 C -0.190 4.190 14 C -0.050 4.050 15 C -0.242 4.242 16 C 0.137 3.863 17 O -0.245 6.245 18 C -0.399 4.399 19 H 0.089 0.911 20 C 0.014 3.986 21 N -0.919 5.919 22 Si 0.964 3.036 23 H -0.266 1.266 24 H -0.264 1.264 25 H -0.269 1.269 26 C -0.196 4.196 27 C 0.102 3.898 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.434 0.566 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.117 0.883 39 H 0.285 0.715 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.167 3.832 -10.285 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.160 4.160 5 C -0.024 4.024 6 N -0.320 5.320 7 C 0.310 3.690 8 O -0.416 6.416 9 C 0.282 3.718 10 O -0.388 6.388 11 N -0.275 5.275 12 C 0.080 3.920 13 C -0.210 4.210 14 C -0.068 4.068 15 C -0.261 4.261 16 C 0.087 3.913 17 O -0.152 6.152 18 C -0.475 4.475 19 H 0.106 0.894 20 C -0.185 4.185 21 N -0.560 5.560 22 Si 0.787 3.213 23 H -0.191 1.191 24 H -0.188 1.188 25 H -0.194 1.194 26 C -0.218 4.218 27 C -0.019 4.019 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.274 0.726 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.082 3.978 -9.804 27.222 hybrid contribution 0.600 0.265 0.309 0.725 sum -24.482 4.243 -9.495 26.600 Atomic orbital electron populations 1.21674 0.91581 1.02994 1.03108 1.22380 0.97701 0.98992 0.92672 0.89459 1.22838 0.93397 1.01147 0.98652 1.22356 0.99951 1.02470 0.77640 1.48400 1.12168 1.62870 1.08581 1.19362 0.84242 0.79427 0.85988 1.90751 1.82971 1.53687 1.14242 1.20453 0.85730 0.78795 0.86786 1.90829 1.82866 1.49896 1.15239 1.42920 1.10579 1.62048 1.11990 1.17270 0.86084 0.95166 0.93516 1.20939 0.97435 0.99379 1.03276 1.21018 0.94975 0.97737 0.93096 1.21415 1.03122 1.02627 0.98983 1.19301 0.93322 0.93331 0.85368 1.83529 1.34430 1.65266 1.31982 1.20768 0.92361 1.24114 1.10238 0.89396 1.25197 0.96010 0.99749 0.97520 1.69717 1.16025 1.44720 1.25489 0.85307 0.78482 0.78920 0.78567 1.19114 1.18830 1.19397 1.20177 0.96728 1.05944 0.98903 1.22733 0.80520 0.99524 0.99125 0.91680 0.90963 0.91573 0.88322 0.88952 0.91200 0.91536 0.72603 0.81987 0.82401 0.86474 0.90508 0.86244 0.90090 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.30 71.98 0.67 -0.17 16 2 C -0.10 -1.01 3.64 -9.40 -0.03 -1.05 16 3 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -1.43 6.42 31.79 0.20 -1.22 16 5 C 0.10 1.94 5.49 86.73 0.48 2.42 16 6 N -0.59 -12.69 3.33 -813.47 -2.71 -15.40 16 7 C 0.53 13.93 7.91 87.24 0.69 14.62 16 8 O -0.54 -15.23 16.74 -3.27 -0.05 -15.29 16 9 C 0.50 15.08 7.69 87.24 0.67 15.76 16 10 O -0.51 -18.38 11.56 -3.35 -0.04 -18.42 16 11 N -0.63 -17.59 5.32 -304.88 -1.62 -19.21 16 12 C 0.17 5.88 6.29 38.20 0.24 6.12 16 13 C -0.19 -5.51 9.97 22.43 0.22 -5.28 16 14 C -0.05 -1.61 10.03 22.23 0.22 -1.39 16 15 C -0.24 -10.47 9.17 22.42 0.21 -10.27 16 16 C 0.14 6.67 6.64 22.56 0.15 6.82 16 17 O -0.24 -13.84 8.58 -22.76 -0.20 -14.03 16 18 C -0.40 -23.77 9.95 67.92 0.68 -23.10 16 19 H 0.09 5.38 5.43 -2.91 -0.02 5.37 16 20 C 0.01 0.83 5.49 84.83 0.47 1.29 16 21 N -0.92 -55.06 13.96 21.62 0.30 -54.76 16 22 Si 0.96 46.68 28.62 68.60 1.96 48.65 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 26 C -0.20 -8.44 8.64 22.52 0.19 -8.24 16 27 C 0.10 1.52 6.37 86.85 0.55 2.07 16 28 H 0.06 0.36 8.11 -2.39 -0.02 0.34 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.86 8.02 -2.39 -0.02 0.84 16 33 H 0.07 1.56 7.71 -2.39 -0.02 1.54 16 34 H 0.07 1.54 7.57 -2.39 -0.02 1.53 16 35 H 0.43 9.53 8.30 -92.70 -0.77 8.76 16 36 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.12 5.47 5.63 -2.91 -0.02 5.46 16 39 H 0.29 15.67 8.31 -92.71 -0.77 14.90 16 40 H 0.12 5.43 6.23 -2.91 -0.02 5.42 16 41 H 0.08 1.27 8.04 -2.39 -0.02 1.25 16 42 H 0.09 1.12 8.04 -2.39 -0.02 1.11 16 Total: -1.00 -72.92 352.47 3.55 -69.37 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.29 Total: 20.70 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.61 Total: -1.62 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -4.02 Total: -89.36 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -0.29 Total: -47.74 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.96 Total: 48.65 kcal Total: -72.92 3.55 -69.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263711763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.666 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds