Wall clock time and date at job start Tue Mar 31 2020 12:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46877 * 2 1 4 4 C 1.50703 * 109.46826 * 119.99944 * 2 1 3 5 5 H 1.08001 * 119.99626 * 119.99826 * 4 2 1 6 6 C 1.37877 * 120.00199 * 300.00113 * 4 2 1 7 7 N 1.31518 * 119.99699 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00039 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46933 * 90.00002 * 8 6 4 10 10 H 1.48501 * 109.46913 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.47326 * 329.99868 * 8 6 4 12 12 N 1.46499 * 109.46884 * 239.99990 * 2 1 3 13 13 C 1.46502 * 120.00168 * 299.99512 * 12 2 1 14 14 C 1.34777 * 119.99901 * 120.00362 * 12 2 1 15 15 O 1.21276 * 119.99964 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00152 * 179.97438 * 14 12 2 17 17 C 1.52993 * 109.47600 * 179.97438 * 16 14 12 18 18 H 1.09002 * 109.40023 * 55.10163 * 17 16 14 19 19 O 1.42929 * 109.43699 * 295.21617 * 17 16 14 20 20 C 1.36013 * 116.99226 * 285.33003 * 19 17 16 21 21 C 1.38451 * 120.42719 * 148.88178 * 20 19 17 22 22 C 1.38295 * 119.89383 * 178.40594 * 21 20 19 23 23 C 1.38283 * 120.23825 * 0.02562 * 22 21 20 24 24 C 1.38259 * 120.19080 * 0.29641 * 23 22 21 25 25 C 1.38574 * 119.85065 * 359.95845 * 24 23 22 26 26 N 1.40153 * 120.55144 * 179.35286 * 25 24 23 27 27 C 1.34964 * 119.19986 * 190.96487 * 26 25 24 28 28 O 1.21297 * 120.13279 * 185.75171 * 27 26 25 29 29 H 1.08999 * 109.46981 * 300.00261 * 1 2 3 30 30 H 1.09003 * 109.47208 * 60.00304 * 1 2 3 31 31 H 1.09002 * 109.47110 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99690 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47734 * 270.00608 * 13 12 2 34 34 H 1.09000 * 109.46773 * 30.01128 * 13 12 2 35 35 H 1.09001 * 109.46977 * 150.00159 * 13 12 2 36 36 H 1.09009 * 109.46601 * 59.99874 * 16 14 12 37 37 H 1.09003 * 109.47127 * 300.00406 * 16 14 12 38 38 H 1.08002 * 120.05195 * 358.43071 * 21 20 19 39 39 H 1.07997 * 119.88060 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.89891 * 180.29915 * 23 22 21 41 41 H 1.08004 * 120.07491 * 179.97438 * 24 23 22 42 42 H 0.96996 * 120.40251 * 10.98526 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.6304 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1122 11 1 2.4879 -2.5653 3.7123 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0859 1.1256 -1.8916 16 6 3.2960 -0.7462 -3.3135 17 6 4.1454 0.2156 -4.1467 18 1 4.9424 0.6253 -3.5262 19 8 3.3232 1.2806 -4.6290 20 6 2.4743 0.9907 -5.6514 21 6 1.2641 1.6533 -5.7672 22 6 0.4241 1.3734 -6.8295 23 6 0.7881 0.4337 -7.7764 24 6 1.9920 -0.2367 -7.6636 25 6 2.8358 0.0354 -6.5987 26 7 4.0534 -0.6452 -6.4626 27 6 4.7482 -0.5281 -5.3114 28 8 5.8510 -1.0232 -5.2127 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7095 1.1618 3.4844 33 1 2.4158 -2.7378 -0.9716 34 1 0.6905 -2.3002 -0.9847 35 1 1.6238 -2.2853 -2.5002 36 1 2.4483 -1.0891 -3.9069 37 1 3.9017 -1.6024 -3.0165 38 1 0.9768 2.3878 -5.0294 39 1 -0.5197 1.8907 -6.9199 40 1 0.1300 0.2230 -8.6064 41 1 2.2742 -0.9706 -8.4041 42 1 4.3929 -1.1935 -7.1871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264023153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:04 Heat of formation + Delta-G solvation = -69.785115 kcal Electronic energy + Delta-G solvation = -27156.593555 eV Core-core repulsion = 23295.388720 eV Total energy + Delta-G solvation = -3861.204835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.76908 -39.16833 -38.97544 -37.54182 -35.39874 -35.27509 -33.00380 -32.03605 -30.55634 -29.65032 -28.92796 -26.23580 -25.57441 -25.16192 -23.74648 -23.02427 -21.21656 -19.58938 -19.19692 -18.28232 -18.09860 -16.79118 -16.58620 -16.22695 -16.00867 -15.79230 -15.28768 -15.10345 -14.87750 -14.41912 -14.22307 -14.06715 -14.04349 -13.37623 -12.97262 -12.72505 -12.60255 -12.53584 -12.24212 -11.86503 -11.63314 -11.54660 -11.40830 -11.15576 -11.06568 -11.04019 -10.83706 -10.71473 -10.25010 -10.21773 -10.16297 -9.19493 -8.99988 -8.87793 -8.43044 -8.12211 -7.61819 -6.07813 -4.15809 0.85960 1.06538 2.07309 2.53016 3.16161 3.27168 3.31120 3.34101 3.37017 3.51178 3.66959 4.02614 4.38146 4.41387 4.54013 4.72087 4.88424 4.97618 5.06857 5.17009 5.21301 5.25611 5.42151 5.51514 5.61055 5.71023 5.80747 5.95700 6.02004 6.23286 6.25584 6.31680 6.46123 6.58640 6.74664 6.80306 7.04085 7.22892 7.39768 7.50066 7.54649 7.70538 8.00076 8.18247 8.48998 8.81603 9.00723 9.50799 10.97479 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.003567 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.737655 B = 7847.161946 C = 8597.377072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.592 5.592 13 C 0.085 3.915 14 C 0.510 3.490 15 O -0.536 6.536 16 C -0.167 4.167 17 C 0.102 3.898 18 H 0.158 0.842 19 O -0.276 6.276 20 C 0.083 3.917 21 C -0.105 4.105 22 C -0.109 4.109 23 C -0.117 4.117 24 C -0.127 4.127 25 C 0.087 3.913 26 N -0.659 5.659 27 C 0.498 3.502 28 O -0.506 6.506 29 H 0.094 0.906 30 H 0.011 0.989 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 -3.903 -20.886 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.323 5.323 13 C -0.059 4.059 14 C 0.296 3.704 15 O -0.414 6.414 16 C -0.208 4.208 17 C 0.042 3.958 18 H 0.175 0.825 19 O -0.190 6.190 20 C 0.036 3.964 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.147 4.147 25 C -0.009 4.009 26 N -0.306 5.306 27 C 0.285 3.715 28 O -0.380 6.380 29 H 0.112 0.888 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.823 -3.186 -20.266 20.532 hybrid contribution 0.440 -1.195 0.437 1.347 sum -0.383 -4.381 -19.830 20.312 Atomic orbital electron populations 1.22093 0.98214 0.99309 1.00883 1.18959 0.90861 0.94551 0.79774 0.91738 1.21316 1.31848 1.13015 0.90298 0.92310 1.24887 0.94919 0.94986 0.98953 1.69879 1.36333 1.22588 1.23763 0.86496 0.78679 0.79851 0.82364 1.20585 1.21128 1.19953 1.48205 1.48960 1.11597 1.23547 1.21575 1.01867 0.83325 0.99110 1.19795 0.79800 0.87095 0.83744 1.90698 1.57926 1.16439 1.76310 1.22292 1.01179 0.99797 0.97484 1.22637 0.93984 0.87583 0.91609 0.82509 1.86498 1.50135 1.34267 1.48055 1.18753 0.92078 0.96918 0.88638 1.20688 0.90321 1.01571 0.99773 1.21030 0.99688 0.98249 0.93871 1.20933 0.96049 0.96870 0.99682 1.20587 0.94514 1.02053 0.97568 1.18070 0.87947 0.97152 0.97699 1.43690 1.20545 1.48655 1.17698 1.21499 0.85446 0.80098 0.84453 1.90805 1.18365 1.46916 1.81922 0.88765 0.96949 0.95164 0.92679 0.93147 0.90669 0.93272 0.88645 0.87192 0.84050 0.84923 0.85242 0.85197 0.74758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 2 C 0.26 6.52 2.64 -69.08 -0.18 6.34 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.12 8.37 -34.44 -0.29 -14.41 16 5 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.94 11.32 55.43 0.63 -24.32 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.59 -12.35 2.75 -175.26 -0.48 -12.83 16 13 C 0.09 1.40 9.48 59.85 0.57 1.97 16 14 C 0.51 10.25 7.55 -10.99 -0.08 10.16 16 15 O -0.54 -12.78 14.74 -9.08 -0.13 -12.91 16 16 C -0.17 -2.48 3.77 -27.89 -0.11 -2.58 16 17 C 0.10 1.52 2.74 -27.86 -0.08 1.44 16 18 H 0.16 2.44 7.96 -51.93 -0.41 2.02 16 19 O -0.28 -4.36 9.37 -34.42 -0.32 -4.68 16 20 C 0.08 1.10 5.84 -39.10 -0.23 0.87 16 21 C -0.10 -1.22 9.99 -39.48 -0.39 -1.61 16 22 C -0.11 -0.97 10.04 -39.54 -0.40 -1.36 16 23 C -0.12 -0.90 10.04 -39.56 -0.40 -1.29 16 24 C -0.13 -1.05 9.93 -39.45 -0.39 -1.44 16 25 C 0.09 0.95 6.57 -83.53 -0.55 0.40 16 26 N -0.66 -7.06 5.46 -9.71 -0.05 -7.11 16 27 C 0.50 6.77 7.18 -10.87 -0.08 6.70 16 28 O -0.51 -8.10 17.95 5.54 0.10 -8.00 16 29 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 35 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16 36 H 0.10 1.26 6.99 -51.92 -0.36 0.90 16 37 H 0.11 1.46 8.11 -51.93 -0.42 1.04 16 38 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.41 3.36 8.87 -40.82 -0.36 3.00 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -33.03 349.75 -7.70 -40.73 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.32 Total: 4.17 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.37 Total: 3.72 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.09 Total: -44.27 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.36 Total: -25.60 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.03 -7.70 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264023153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.055 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds