Wall clock time and date at job start Tue Mar 31 2020 12:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46877 * 2 1 4 4 C 1.50703 * 109.46826 * 119.99944 * 2 1 3 5 5 H 1.08001 * 119.99626 * 119.99826 * 4 2 1 6 6 C 1.37877 * 120.00199 * 300.00113 * 4 2 1 7 7 N 1.31518 * 119.99699 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00039 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46933 * 90.00002 * 8 6 4 10 10 H 1.48501 * 109.46913 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.47326 * 329.99868 * 8 6 4 12 12 N 1.46499 * 109.46884 * 239.99990 * 2 1 3 13 13 C 1.46502 * 120.00168 * 299.99512 * 12 2 1 14 14 C 1.34777 * 119.99901 * 120.00362 * 12 2 1 15 15 O 1.21276 * 119.99964 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00152 * 179.97438 * 14 12 2 17 17 C 1.52993 * 109.47600 * 179.97438 * 16 14 12 18 18 H 1.09002 * 109.40023 * 55.10163 * 17 16 14 19 19 O 1.42929 * 109.43699 * 295.21617 * 17 16 14 20 20 C 1.36013 * 116.99226 * 285.33003 * 19 17 16 21 21 C 1.38451 * 120.42719 * 148.88178 * 20 19 17 22 22 C 1.38295 * 119.89383 * 178.40594 * 21 20 19 23 23 C 1.38283 * 120.23825 * 0.02562 * 22 21 20 24 24 C 1.38259 * 120.19080 * 0.29641 * 23 22 21 25 25 C 1.38574 * 119.85065 * 359.95845 * 24 23 22 26 26 N 1.40153 * 120.55144 * 179.35286 * 25 24 23 27 27 C 1.34964 * 119.19986 * 190.96487 * 26 25 24 28 28 O 1.21297 * 120.13279 * 185.75171 * 27 26 25 29 29 H 1.08999 * 109.46981 * 300.00261 * 1 2 3 30 30 H 1.09003 * 109.47208 * 60.00304 * 1 2 3 31 31 H 1.09002 * 109.47110 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99690 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47734 * 270.00608 * 13 12 2 34 34 H 1.09000 * 109.46773 * 30.01128 * 13 12 2 35 35 H 1.09001 * 109.46977 * 150.00159 * 13 12 2 36 36 H 1.09009 * 109.46601 * 59.99874 * 16 14 12 37 37 H 1.09003 * 109.47127 * 300.00406 * 16 14 12 38 38 H 1.08002 * 120.05195 * 358.43071 * 21 20 19 39 39 H 1.07997 * 119.88060 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.89891 * 180.29915 * 23 22 21 41 41 H 1.08004 * 120.07491 * 179.97438 * 24 23 22 42 42 H 0.96996 * 120.40251 * 10.98526 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.6304 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1122 11 1 2.4879 -2.5653 3.7123 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0859 1.1256 -1.8916 16 6 3.2960 -0.7462 -3.3135 17 6 4.1454 0.2156 -4.1467 18 1 4.9424 0.6253 -3.5262 19 8 3.3232 1.2806 -4.6290 20 6 2.4743 0.9907 -5.6514 21 6 1.2641 1.6533 -5.7672 22 6 0.4241 1.3734 -6.8295 23 6 0.7881 0.4337 -7.7764 24 6 1.9920 -0.2367 -7.6636 25 6 2.8358 0.0354 -6.5987 26 7 4.0534 -0.6452 -6.4626 27 6 4.7482 -0.5281 -5.3114 28 8 5.8510 -1.0232 -5.2127 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7095 1.1618 3.4844 33 1 2.4158 -2.7378 -0.9716 34 1 0.6905 -2.3002 -0.9847 35 1 1.6238 -2.2853 -2.5002 36 1 2.4483 -1.0891 -3.9069 37 1 3.9017 -1.6024 -3.0165 38 1 0.9768 2.3878 -5.0294 39 1 -0.5197 1.8907 -6.9199 40 1 0.1300 0.2230 -8.6064 41 1 2.2742 -0.9706 -8.4041 42 1 4.3929 -1.1935 -7.1871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264023153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:03 Heat of formation + Delta-G solvation = -91.840048 kcal Electronic energy + Delta-G solvation = -27157.549929 eV Core-core repulsion = 23295.388720 eV Total energy + Delta-G solvation = -3862.161209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.76942 -40.68649 -39.98802 -38.55704 -37.11842 -36.23127 -34.86965 -33.36008 -31.48984 -31.13602 -29.99141 -27.66723 -27.30821 -26.77177 -24.63681 -23.80549 -22.96535 -20.57877 -20.32573 -19.72100 -19.02745 -18.54238 -17.93308 -17.69484 -17.07647 -16.95538 -16.80374 -16.25538 -16.01719 -15.85157 -15.56890 -15.20597 -14.85770 -14.64024 -14.40263 -14.21595 -14.04015 -13.68985 -13.47013 -13.25211 -13.04814 -12.95288 -12.90671 -12.69584 -12.60768 -12.23925 -12.19453 -12.16544 -12.09963 -11.89751 -11.29034 -11.16619 -10.69970 -10.48634 -9.66071 -9.34211 -8.97556 -8.14379 -6.30827 0.02442 0.30311 1.08620 1.41219 1.42878 1.52314 1.58899 1.74815 2.20944 2.27652 2.45789 2.76038 2.85401 3.13681 3.32467 3.58170 3.69332 3.84365 4.09252 4.21485 4.28296 4.37450 4.39266 4.46409 4.58011 4.67694 4.78462 4.82747 4.89386 5.01701 5.05642 5.07076 5.23631 5.46610 5.47492 5.54763 5.61272 5.67180 5.69279 5.75512 6.03497 6.16521 6.30121 6.62794 6.76955 6.78942 7.30296 7.46250 8.89926 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.003567 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.737655 B = 7847.161946 C = 8597.377072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.262 3.738 3 H 0.010 0.990 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.262 1.262 12 N -0.600 5.600 13 C 0.081 3.919 14 C 0.502 3.498 15 O -0.585 6.585 16 C -0.147 4.147 17 C 0.098 3.902 18 H 0.137 0.863 19 O -0.306 6.306 20 C 0.048 3.952 21 C -0.127 4.127 22 C -0.104 4.104 23 C -0.105 4.105 24 C -0.112 4.112 25 C 0.075 3.925 26 N -0.641 5.641 27 C 0.507 3.493 28 O -0.535 6.535 29 H 0.067 0.933 30 H 0.020 0.980 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 -6.651 -23.593 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.160 3.840 3 H 0.028 0.972 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.210 1.210 10 H -0.205 1.205 11 H -0.186 1.186 12 N -0.330 5.330 13 C -0.061 4.061 14 C 0.290 3.710 15 O -0.466 6.466 16 C -0.187 4.187 17 C 0.038 3.962 18 H 0.154 0.846 19 O -0.220 6.220 20 C 0.002 3.998 21 C -0.147 4.147 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.132 4.132 25 C -0.020 4.020 26 N -0.288 5.288 27 C 0.294 3.706 28 O -0.412 6.412 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.174 0.826 40 H 0.186 0.814 41 H 0.184 0.816 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.884 -5.974 -23.031 23.868 hybrid contribution 0.657 -0.245 1.152 1.349 sum -1.227 -6.219 -21.879 22.779 Atomic orbital electron populations 1.21867 0.97027 1.00127 0.99967 1.18542 0.91708 0.92211 0.81523 0.97238 1.21582 1.31897 1.13068 0.91185 0.92180 1.25716 0.95064 0.95648 1.01961 1.70023 1.37285 1.23852 1.24404 0.85479 0.77762 0.79230 0.78682 1.20967 1.20500 1.18575 1.48196 1.49083 1.13365 1.22396 1.21834 1.01853 0.80454 1.02003 1.20650 0.78843 0.86716 0.84774 1.90671 1.59471 1.18881 1.77573 1.22155 1.02130 0.99563 0.94889 1.22493 0.93704 0.87699 0.92309 0.84566 1.86456 1.51032 1.35055 1.49478 1.19081 0.92579 0.99035 0.89098 1.20786 0.90937 1.01967 1.00968 1.21364 0.99832 0.98220 0.92796 1.21413 0.96047 0.95133 0.99752 1.21039 0.93720 1.01813 0.96643 1.18179 0.88379 0.97127 0.98296 1.43456 1.20220 1.48109 1.17038 1.21071 0.85064 0.79574 0.84902 1.90793 1.19462 1.48333 1.82589 0.91417 0.96065 0.93292 0.92648 0.92456 0.90805 0.89118 0.86267 0.85083 0.85888 0.82599 0.81436 0.81631 0.72919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 8.95 71.98 0.64 -5.67 16 2 C 0.26 13.70 2.64 44.25 0.12 13.82 16 3 H 0.01 0.60 6.90 -2.39 -0.02 0.59 16 4 C -0.54 -29.44 8.37 25.60 0.21 -29.22 16 5 H 0.06 3.19 7.65 -2.91 -0.02 3.16 16 6 C 0.02 0.87 5.30 84.65 0.45 1.31 16 7 N -0.92 -53.08 11.32 21.45 0.24 -52.83 16 8 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 12 N -0.60 -25.27 2.75 -826.78 -2.28 -27.54 16 13 C 0.08 2.49 9.48 127.77 1.21 3.70 16 14 C 0.50 20.76 7.55 87.66 0.66 21.43 16 15 O -0.58 -29.85 14.74 10.98 0.16 -29.69 16 16 C -0.15 -4.29 3.77 29.85 0.11 -4.18 16 17 C 0.10 3.01 2.74 29.86 0.08 3.09 16 18 H 0.14 4.61 7.96 -2.39 -0.02 4.59 16 19 O -0.31 -10.15 9.37 -79.71 -0.75 -10.90 16 20 C 0.05 1.26 5.84 22.58 0.13 1.39 16 21 C -0.13 -2.96 9.99 22.33 0.22 -2.74 16 22 C -0.10 -1.55 10.04 22.29 0.22 -1.32 16 23 C -0.11 -1.12 10.04 22.29 0.22 -0.89 16 24 C -0.11 -1.34 9.93 22.36 0.22 -1.12 16 25 C 0.08 1.46 6.57 38.15 0.25 1.71 16 26 N -0.64 -12.34 5.46 -302.91 -1.66 -14.00 16 27 C 0.51 13.47 7.18 87.65 0.63 14.10 16 28 O -0.54 -16.90 17.95 -3.08 -0.06 -16.96 16 29 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 2.11 6.66 -2.39 -0.02 2.10 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.30 6.43 -2.39 -0.02 2.28 16 35 H 0.09 2.03 6.44 -2.39 -0.02 2.01 16 36 H 0.12 2.89 6.99 -2.38 -0.02 2.87 16 37 H 0.13 3.26 8.11 -2.39 -0.02 3.24 16 38 H 0.12 3.17 8.06 -2.91 -0.02 3.14 16 39 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 41 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.43 5.66 8.87 -92.71 -0.82 4.84 16 Total: -1.00 -76.93 349.75 3.34 -73.59 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.24 Total: 17.58 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 5.40 Total: 15.41 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -3.69 Total: -94.37 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -0.64 Total: -57.55 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -76.93 3.34 -73.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264023153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.251 kcal (2) G-P(sol) polarization free energy of solvation -76.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds