Wall clock time and date at job start Tue Mar 31 2020 12:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47150 * 2 1 4 4 C 1.50699 * 109.47217 * 239.99724 * 2 1 3 5 5 H 1.08004 * 120.00095 * 239.99947 * 4 2 1 6 6 C 1.37875 * 119.99834 * 60.00298 * 4 2 1 7 7 N 1.31511 * 119.99940 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99988 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47033 * 89.99601 * 8 6 4 10 10 H 1.48501 * 109.47038 * 210.00029 * 8 6 4 11 11 H 1.48503 * 109.46962 * 329.99916 * 8 6 4 12 12 N 1.46502 * 109.47282 * 119.99602 * 2 1 3 13 13 C 1.46505 * 119.99609 * 59.99708 * 12 2 1 14 14 C 1.34773 * 120.00376 * 240.00589 * 12 2 1 15 15 O 1.21285 * 119.99752 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00225 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47120 * 179.97438 * 16 14 12 18 18 H 1.09003 * 109.43778 * 304.91921 * 17 16 14 19 19 O 1.42938 * 109.40230 * 64.81390 * 17 16 14 20 20 C 1.36013 * 116.95997 * 74.59249 * 19 17 16 21 21 C 1.38439 * 120.44977 * 211.73263 * 20 19 17 22 22 C 1.38304 * 119.89095 * 181.47037 * 21 20 19 23 23 C 1.38280 * 120.23835 * 0.04109 * 22 21 20 24 24 C 1.38268 * 120.19180 * 359.95449 * 23 22 21 25 25 C 1.38567 * 119.84035 * 359.44697 * 24 23 22 26 26 N 1.40160 * 120.56073 * 181.75429 * 25 24 23 27 27 C 1.34945 * 119.23723 * 168.95316 * 26 25 24 28 28 O 1.21289 * 120.11221 * 174.06693 * 27 26 25 29 29 H 1.08999 * 109.47060 * 59.99860 * 1 2 3 30 30 H 1.08997 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47245 * 300.00537 * 1 2 3 32 32 H 0.97002 * 119.99996 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47124 * 270.00189 * 13 12 2 34 34 H 1.08995 * 109.47199 * 30.00581 * 13 12 2 35 35 H 1.09005 * 109.46563 * 150.00367 * 13 12 2 36 36 H 1.09000 * 109.47237 * 59.99639 * 16 14 12 37 37 H 1.08992 * 109.47087 * 299.99588 * 16 14 12 38 38 H 1.08003 * 120.05608 * 1.49611 * 21 20 19 39 39 H 1.08006 * 119.87976 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.89945 * 179.67366 * 23 22 21 41 41 H 1.08002 * 120.07346 * 179.69191 * 24 23 22 42 42 H 0.96998 * 120.37935 * 348.97661 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6033 8 14 2.3214 -1.1205 -4.0079 9 1 1.3428 -2.1618 -4.4117 10 1 2.4867 -0.1415 -5.1122 11 1 3.6293 -1.7585 -3.7121 12 7 2.0184 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0864 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2158 4.1466 18 1 4.9430 0.6247 3.5262 19 8 3.3236 1.2815 4.6282 20 6 2.4737 0.9915 5.6497 21 6 1.2581 1.6451 5.7581 22 6 0.4160 1.3632 6.8183 23 6 0.7842 0.4312 7.7712 24 6 1.9966 -0.2257 7.6694 25 6 2.8391 0.0434 6.6028 26 7 4.0550 -0.6401 6.4650 27 6 4.7475 -0.5274 5.3122 28 8 5.8502 -1.0227 5.2139 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7082 1.1608 -3.4844 33 1 0.7375 -2.1442 1.9994 34 1 1.5295 -2.5968 0.4710 35 1 2.4629 -2.5818 1.9865 36 1 3.9004 -1.6024 3.0180 37 1 2.4471 -1.0878 3.9074 38 1 0.9677 2.3738 5.0156 39 1 -0.5324 1.8729 6.9025 40 1 0.1247 0.2191 8.5998 41 1 2.2844 -0.9496 8.4175 42 1 4.3946 -1.1881 7.1897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264023159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:17 Heat of formation + Delta-G solvation = -70.515637 kcal Electronic energy + Delta-G solvation = -27157.908480 eV Core-core repulsion = 23296.671967 eV Total energy + Delta-G solvation = -3861.236513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.76660 -39.16483 -38.97492 -37.53819 -35.39303 -35.27039 -33.00540 -32.03393 -30.55407 -29.64941 -28.92951 -26.21509 -25.54981 -25.18162 -23.74364 -23.02211 -21.22407 -19.58788 -19.19411 -18.29466 -18.09676 -16.77799 -16.59249 -16.22159 -16.01107 -15.77862 -15.29593 -15.11373 -14.87295 -14.40783 -14.21734 -14.09417 -14.03767 -13.34728 -12.96379 -12.67681 -12.63799 -12.44806 -12.22536 -11.87729 -11.66024 -11.53364 -11.40208 -11.18773 -11.07965 -11.04533 -10.82576 -10.70449 -10.27831 -10.21974 -10.16208 -9.20244 -8.98954 -8.87545 -8.43805 -8.12194 -7.62054 -6.08331 -4.16473 0.86165 1.06616 2.07556 2.53103 3.16664 3.25684 3.31328 3.33829 3.37243 3.51970 3.66845 4.02883 4.37943 4.41462 4.54077 4.72436 4.88733 4.97842 5.08515 5.17503 5.21849 5.25074 5.39092 5.53067 5.62159 5.72934 5.81031 5.95915 5.98614 6.23496 6.31679 6.32615 6.46322 6.58881 6.74060 6.81821 7.05092 7.23140 7.38827 7.51571 7.54698 7.70166 7.99981 8.18316 8.48732 8.80924 9.00751 9.50070 10.96943 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.003569 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.235356 B = 7844.364055 C = 8595.839211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.591 5.591 13 C 0.082 3.918 14 C 0.510 3.490 15 O -0.536 6.536 16 C -0.167 4.167 17 C 0.102 3.898 18 H 0.158 0.842 19 O -0.276 6.276 20 C 0.083 3.917 21 C -0.104 4.104 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.127 4.127 25 C 0.088 3.912 26 N -0.659 5.659 27 C 0.498 3.502 28 O -0.507 6.507 29 H 0.093 0.907 30 H 0.028 0.972 31 H 0.011 0.989 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 -3.961 20.756 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.323 5.323 13 C -0.062 4.062 14 C 0.296 3.704 15 O -0.414 6.414 16 C -0.208 4.208 17 C 0.042 3.958 18 H 0.175 0.825 19 O -0.190 6.190 20 C 0.036 3.964 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.135 4.135 24 C -0.147 4.147 25 C -0.008 4.008 26 N -0.306 5.306 27 C 0.285 3.715 28 O -0.380 6.380 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.685 -3.238 20.135 20.406 hybrid contribution 0.406 -1.189 -0.408 1.322 sum -0.279 -4.427 19.727 20.220 Atomic orbital electron populations 1.22075 0.98164 0.99343 1.00802 1.18956 0.90879 0.94562 0.79738 0.91759 1.21316 1.31916 1.13050 0.90314 0.92254 1.24885 0.94928 0.94949 0.98950 1.69876 1.36280 1.22543 1.23780 0.86499 0.79195 0.79305 0.82421 1.20636 1.21075 1.19916 1.48207 1.48991 1.11565 1.23503 1.21620 0.98681 0.83391 1.02511 1.19805 0.79841 0.87113 0.83676 1.90699 1.57961 1.16464 1.76254 1.22287 1.01257 0.99765 0.97443 1.22645 0.94001 0.87564 0.91602 0.82507 1.86503 1.50097 1.34207 1.48164 1.18742 0.92009 0.97102 0.88568 1.20694 0.90243 1.01585 0.99794 1.21033 0.99705 0.98244 0.93885 1.20935 0.95931 0.96980 0.99655 1.20586 0.94403 1.02173 0.97585 1.18076 0.87915 0.97210 0.97600 1.43687 1.20815 1.48526 1.17552 1.21497 0.85427 0.80088 0.84479 1.90802 1.18324 1.46893 1.82013 0.88826 0.95238 0.97020 0.92663 0.93872 0.89873 0.93028 0.87176 0.88674 0.84053 0.84922 0.85239 0.85196 0.74772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 2 C 0.26 6.52 2.64 -69.08 -0.18 6.34 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.09 7.99 -34.44 -0.28 -14.36 16 5 H 0.06 1.56 7.33 -52.48 -0.38 1.17 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.59 -12.35 2.75 -175.25 -0.48 -12.83 16 13 C 0.08 1.34 9.24 59.85 0.55 1.90 16 14 C 0.51 10.26 7.55 -10.99 -0.08 10.17 16 15 O -0.54 -12.79 14.74 -9.10 -0.13 -12.93 16 16 C -0.17 -2.48 3.77 -27.88 -0.11 -2.58 16 17 C 0.10 1.52 2.75 -27.85 -0.08 1.44 16 18 H 0.16 2.44 7.96 -51.93 -0.41 2.02 16 19 O -0.28 -4.37 9.37 -34.44 -0.32 -4.70 16 20 C 0.08 1.09 5.83 -39.11 -0.23 0.87 16 21 C -0.10 -1.22 10.00 -39.48 -0.39 -1.62 16 22 C -0.11 -0.98 10.04 -39.54 -0.40 -1.37 16 23 C -0.12 -0.90 10.04 -39.56 -0.40 -1.30 16 24 C -0.13 -1.05 9.94 -39.45 -0.39 -1.44 16 25 C 0.09 0.96 6.58 -83.53 -0.55 0.41 16 26 N -0.66 -7.08 5.46 -9.71 -0.05 -7.14 16 27 C 0.50 6.78 7.19 -10.87 -0.08 6.70 16 28 O -0.51 -8.10 17.95 5.55 0.10 -8.00 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 30 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 35 H 0.05 0.69 6.44 -51.93 -0.33 0.35 16 36 H 0.11 1.46 7.40 -51.93 -0.38 1.07 16 37 H 0.09 1.27 7.69 -51.93 -0.40 0.87 16 38 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.41 3.37 8.86 -40.82 -0.36 3.01 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -32.95 350.42 -7.76 -40.71 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.39 Total: 4.26 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.37 Total: 3.72 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.09 Total: -44.22 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.36 Total: -25.63 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.95 -7.76 -40.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264023159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.810 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds